Ggra1370.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1370.t1
Unique NameGgra1370.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Homology
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BLAST of Ggra1370.t1 vs. uniprot
Match: A0A2V3J1U2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1U2_9FLOR)

HSP 1 Score: 108 bits (269), Expect = 3.000e-26
Identity = 66/138 (47.83%), Postives = 91/138 (65.94%), Query Frame = 0 
Query:   96 IVTSDCIVRKGWVLEFIPLFFISLSVILVLYGIYKRFDGYHDVPPTDASRH--VLNDAVPA--YQSMSHAYRTSAMRHARSPSSDAVSAAGRLPEV---EQLAADESIALPAKTSSTT--LDPIPEFAPLGAEAVQSE 224
            +VTSDCIVRKGW+LE +P  FI +SV L+LYG+YKRFDGY+++  T AS H  VL  + P   Y ++  AYR +A RH+RS S +    A  LP++   E +   +S+  P +T S+   LDPIPEFAPLG ++  S+
Sbjct:    1 MVTSDCIVRKGWILEVVPSLFIVISVALLLYGLYKRFDGYNNIATTTASEHARVLPSSGPMINYNTLQGAYRPAASRHSRSLSGELARPATVLPKIPDDEPMLHPDSMPPPLQTKSSNCALDPIPEFAPLGHDSSDSK 138
The following BLAST results are available for this feature:
BLAST of Ggra1370.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1U23.000e-2647.83Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 195..232
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..106
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 130..232
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 107..129
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 23..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..40
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availableTMHMMTMhelixcoord: 12..34
NoneNo IPR availableTMHMMTMhelixcoord: 107..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:393999..394697 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1370.t1Ggra1370.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 393999..394697 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1370.t1 ID=Ggra1370.t1|Name=Ggra1370.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MRACRRGAVGPLSVALLLLLLLLSLCSPGASLPMASATSALENKCQCDCC
YAVGANGRTDCVPPTATSFDVQTCAKCDVDACSSVFPLTCAQASSIVTSD
CIVRKGWVLEFIPLFFISLSVILVLYGIYKRFDGYHDVPPTDASRHVLND
AVPAYQSMSHAYRTSAMRHARSPSSDAVSAAGRLPEVEQLAADESIALPA
KTSSTTLDPIPEFAPLGAEAVQSEPQSSQTRP*
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