Ggra1368.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1368.t1
Unique Name	Ggra1368.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	527

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:390179..391759 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1368	Ggra1368	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 390179..391759 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1.stop1	Ggra1368.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 390179..390181 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1.CDS1	Ggra1368.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 390179..391759 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1.exon1	Ggra1368.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 390179..391759 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1.start1	Ggra1368.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 391757..391759 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1	Ggra1368.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 390179..391759 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:390179..391759-
coding sequence from alignment at tig00000092_pilon:390179..391759-

mRNA sequence

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=527bp
MTTPASSAWHRRRAVLSTSNNAPPHARVSAVRHAQPLRADGGGAAPLRRS
SPRGGADGVLRAASARSLAARALSAVAASPSAWRALPLCLLALLLGRSLS
CGTRLAARVLAALAVPPYVLLCMAGGACATQRAQRRRRARAALLLSALRC
ASFLVVQSVLHAFITYGPSLSRACSTRLLPSGAQLLPHALLPLLSAPLYA
ALGAEARSSLLLLRPFGGWLHAARALAPRVLLLAVLPPLVAAAPALLLCV
AVLWSPLRVLRALLCAVQSTACCLLLWNVLQSWCVLPRRVPLHEARLVTA
QLANMRALGHAPDARFIDALHAVSQHHAQLPSFVAFVDASGEAWRSSLAV
LLAPLTRVSDSLSAQNASGKAALLVGGGGGGGGGGGGGGVAERLDDEAVR
QAVCACDTLRRLFVNSYNVDVYGVVQRTLPATLVVLLKLKQHMWLWLKQR
RGAPNGALRALRVADWVGVASQRRLVEVVDDELVRCVYAIVARFQPFLHS
LLAGGEFDWDASVNDVLRAFLRYDVP*

spliced messenger RNA

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000092_pilon:390179..391759- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGCCGGCGAGCAGCGCGTGGCACCGGCGTCGCGCCGTACTCTC
GACCTCCAACAACGCGCCGCCGCACGCGCGCGTGAGCGCGGTGCGCCACG
CACAGCCGCTGCGCGCCGACGGCGGCGGCGCCGCACCGCTGCGGCGCTCG
TCGCCGCGCGGCGGCGCCGACGGCGTGCTGCGCGCCGCGAGCGCGCGCTC
GCTGGCGGCGCGCGCGCTGTCGGCCGTGGCGGCGTCGCCTTCGGCGTGGC
GCGCGCTTCCGCTGTGCCTGCTGGCGCTGCTGCTGGGGCGCAGCCTATCG
TGCGGCACGCGGCTGGCGGCGCGCGTGCTAGCCGCGTTGGCCGTGCCGCC
GTACGTGCTGCTCTGCATGGCGGGCGGCGCATGCGCGACGCAGCGCGCTC
AGCGACGGCGGCGAGCACGCGCCGCGCTGCTGCTGTCGGCGCTACGCTGC
GCGTCGTTCCTGGTGGTACAGAGCGTGTTACACGCCTTCATCACGTACGG
CCCGTCGCTGAGCCGCGCGTGCTCGACGCGGCTGTTGCCGAGCGGCGCGC
AGCTGCTGCCGCACGCGCTGTTACCGCTGCTGAGCGCGCCGCTTTACGCG
GCGTTGGGCGCGGAGGCGCGCAGCTCGCTGCTGTTACTGCGGCCGTTTGG
CGGGTGGCTGCACGCGGCGCGCGCGTTGGCGCCGCGCGTGTTGTTACTGG
CCGTGCTACCGCCGCTGGTGGCGGCCGCGCCCGCGCTGCTGCTGTGCGTG
GCGGTGCTATGGTCGCCGCTGCGCGTGCTGCGCGCGCTGCTGTGCGCCGT
GCAGAGCACCGCCTGTTGTCTGTTGCTGTGGAACGTGTTGCAGAGCTGGT
GCGTGTTGCCGCGCCGCGTGCCGCTGCATGAGGCGCGATTGGTGACGGCG
CAGCTTGCAAACATGCGTGCGCTTGGCCATGCGCCGGACGCGCGCTTCAT
CGATGCGTTGCACGCCGTCTCGCAGCACCACGCGCAGCTGCCGTCGTTCG
TGGCGTTTGTGGACGCCAGCGGCGAGGCGTGGCGAAGCTCGCTCGCTGTG
TTGCTGGCGCCGCTCACGCGCGTCAGCGACTCGCTCAGCGCGCAGAACGC
CAGCGGCAAGGCGGCGCTGCTGGTCGGCGGCGGCGGCGGCGGCGGAGGGG
GAGGAGGAGGCGGCGGTGTGGCGGAGCGGCTGGACGACGAGGCGGTGCGA
CAGGCCGTGTGCGCGTGCGACACGCTGCGCAGGCTGTTTGTGAACAGCTA
TAACGTGGATGTGTACGGCGTGGTGCAGCGCACGCTGCCGGCCACGCTGG
TGGTGCTGCTCAAGCTCAAGCAGCACATGTGGCTGTGGCTCAAGCAGCGG
CGTGGCGCGCCGAACGGCGCGCTGCGCGCTCTGCGCGTGGCCGACTGGGT
GGGCGTGGCGTCGCAGCGCCGGCTGGTGGAGGTGGTGGACGACGAGTTGG
TGCGCTGCGTGTACGCCATCGTGGCGCGCTTCCAACCGTTCCTTCACAGC
CTGCTCGCCGGCGGCGAGTTCGACTGGGACGCCTCCGTCAACGACGTGCT
GCGCGCGTTTTTGCGCTACGACGTGCCGTGA

protein sequence of Ggra1368.t1

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=527bp
MTTPASSAWHRRRAVLSTSNNAPPHARVSAVRHAQPLRADGGGAAPLRRS
SPRGGADGVLRAASARSLAARALSAVAASPSAWRALPLCLLALLLGRSLS
CGTRLAARVLAALAVPPYVLLCMAGGACATQRAQRRRRARAALLLSALRC
ASFLVVQSVLHAFITYGPSLSRACSTRLLPSGAQLLPHALLPLLSAPLYA
ALGAEARSSLLLLRPFGGWLHAARALAPRVLLLAVLPPLVAAAPALLLCV
AVLWSPLRVLRALLCAVQSTACCLLLWNVLQSWCVLPRRVPLHEARLVTA
QLANMRALGHAPDARFIDALHAVSQHHAQLPSFVAFVDASGEAWRSSLAV
LLAPLTRVSDSLSAQNASGKAALLVGGGGGGGGGGGGGGVAERLDDEAVR
QAVCACDTLRRLFVNSYNVDVYGVVQRTLPATLVVLLKLKQHMWLWLKQR
RGAPNGALRALRVADWVGVASQRRLVEVVDDELVRCVYAIVARFQPFLHS
LLAGGEFDWDASVNDVLRAFLRYDVP*

mRNA from alignment at tig00000092_pilon:390179..391759-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1581bp|location=Sequence derived from alignment at tig00000092_pilon:390179..391759- (Gracilaria gracilis GNS1m male)
ATGACGACGCCGGCGAGCAGCGCGTGGCACCGGCGTCGCGCCGTACTCTC
GACCTCCAACAACGCGCCGCCGCACGCGCGCGTGAGCGCGGTGCGCCACG
CACAGCCGCTGCGCGCCGACGGCGGCGGCGCCGCACCGCTGCGGCGCTCG
TCGCCGCGCGGCGGCGCCGACGGCGTGCTGCGCGCCGCGAGCGCGCGCTC
GCTGGCGGCGCGCGCGCTGTCGGCCGTGGCGGCGTCGCCTTCGGCGTGGC
GCGCGCTTCCGCTGTGCCTGCTGGCGCTGCTGCTGGGGCGCAGCCTATCG
TGCGGCACGCGGCTGGCGGCGCGCGTGCTAGCCGCGTTGGCCGTGCCGCC
GTACGTGCTGCTCTGCATGGCGGGCGGCGCATGCGCGACGCAGCGCGCTC
AGCGACGGCGGCGAGCACGCGCCGCGCTGCTGCTGTCGGCGCTACGCTGC
GCGTCGTTCCTGGTGGTACAGAGCGTGTTACACGCCTTCATCACGTACGG
CCCGTCGCTGAGCCGCGCGTGCTCGACGCGGCTGTTGCCGAGCGGCGCGC
AGCTGCTGCCGCACGCGCTGTTACCGCTGCTGAGCGCGCCGCTTTACGCG
GCGTTGGGCGCGGAGGCGCGCAGCTCGCTGCTGTTACTGCGGCCGTTTGG
CGGGTGGCTGCACGCGGCGCGCGCGTTGGCGCCGCGCGTGTTGTTACTGG
CCGTGCTACCGCCGCTGGTGGCGGCCGCGCCCGCGCTGCTGCTGTGCGTG
GCGGTGCTATGGTCGCCGCTGCGCGTGCTGCGCGCGCTGCTGTGCGCCGT
GCAGAGCACCGCCTGTTGTCTGTTGCTGTGGAACGTGTTGCAGAGCTGGT
GCGTGTTGCCGCGCCGCGTGCCGCTGCATGAGGCGCGATTGGTGACGGCG
CAGCTTGCAAACATGCGTGCGCTTGGCCATGCGCCGGACGCGCGCTTCAT
CGATGCGTTGCACGCCGTCTCGCAGCACCACGCGCAGCTGCCGTCGTTCG
TGGCGTTTGTGGACGCCAGCGGCGAGGCGTGGCGAAGCTCGCTCGCTGTG
TTGCTGGCGCCGCTCACGCGCGTCAGCGACTCGCTCAGCGCGCAGAACGC
CAGCGGCAAGGCGGCGCTGCTGGTCGGCGGCGGCGGCGGCGGCGGAGGGG
GAGGAGGAGGCGGCGGTGTGGCGGAGCGGCTGGACGACGAGGCGGTGCGA
CAGGCCGTGTGCGCGTGCGACACGCTGCGCAGGCTGTTTGTGAACAGCTA
TAACGTGGATGTGTACGGCGTGGTGCAGCGCACGCTGCCGGCCACGCTGG
TGGTGCTGCTCAAGCTCAAGCAGCACATGTGGCTGTGGCTCAAGCAGCGG
CGTGGCGCGCCGAACGGCGCGCTGCGCGCTCTGCGCGTGGCCGACTGGGT
GGGCGTGGCGTCGCAGCGCCGGCTGGTGGAGGTGGTGGACGACGAGTTGG
TGCGCTGCGTGTACGCCATCGTGGCGCGCTTCCAACCGTTCCTTCACAGC
CTGCTCGCCGGCGGCGAGTTCGACTGGGACGCCTCCGTCAACGACGTGCT
GCGCGCGTTTTTGCGCTACGACGTGCCGTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:390179..391759-

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1581bp|location=Sequence derived from alignment at tig00000092_pilon:390179..391759- (Gracilaria gracilis GNS1m male)
ATGACGACGCCGGCGAGCAGCGCGTGGCACCGGCGTCGCGCCGTACTCTC
GACCTCCAACAACGCGCCGCCGCACGCGCGCGTGAGCGCGGTGCGCCACG
CACAGCCGCTGCGCGCCGACGGCGGCGGCGCCGCACCGCTGCGGCGCTCG
TCGCCGCGCGGCGGCGCCGACGGCGTGCTGCGCGCCGCGAGCGCGCGCTC
GCTGGCGGCGCGCGCGCTGTCGGCCGTGGCGGCGTCGCCTTCGGCGTGGC
GCGCGCTTCCGCTGTGCCTGCTGGCGCTGCTGCTGGGGCGCAGCCTATCG
TGCGGCACGCGGCTGGCGGCGCGCGTGCTAGCCGCGTTGGCCGTGCCGCC
GTACGTGCTGCTCTGCATGGCGGGCGGCGCATGCGCGACGCAGCGCGCTC
AGCGACGGCGGCGAGCACGCGCCGCGCTGCTGCTGTCGGCGCTACGCTGC
GCGTCGTTCCTGGTGGTACAGAGCGTGTTACACGCCTTCATCACGTACGG
CCCGTCGCTGAGCCGCGCGTGCTCGACGCGGCTGTTGCCGAGCGGCGCGC
AGCTGCTGCCGCACGCGCTGTTACCGCTGCTGAGCGCGCCGCTTTACGCG
GCGTTGGGCGCGGAGGCGCGCAGCTCGCTGCTGTTACTGCGGCCGTTTGG
CGGGTGGCTGCACGCGGCGCGCGCGTTGGCGCCGCGCGTGTTGTTACTGG
CCGTGCTACCGCCGCTGGTGGCGGCCGCGCCCGCGCTGCTGCTGTGCGTG
GCGGTGCTATGGTCGCCGCTGCGCGTGCTGCGCGCGCTGCTGTGCGCCGT
GCAGAGCACCGCCTGTTGTCTGTTGCTGTGGAACGTGTTGCAGAGCTGGT
GCGTGTTGCCGCGCCGCGTGCCGCTGCATGAGGCGCGATTGGTGACGGCG
CAGCTTGCAAACATGCGTGCGCTTGGCCATGCGCCGGACGCGCGCTTCAT
CGATGCGTTGCACGCCGTCTCGCAGCACCACGCGCAGCTGCCGTCGTTCG
TGGCGTTTGTGGACGCCAGCGGCGAGGCGTGGCGAAGCTCGCTCGCTGTG
TTGCTGGCGCCGCTCACGCGCGTCAGCGACTCGCTCAGCGCGCAGAACGC
CAGCGGCAAGGCGGCGCTGCTGGTCGGCGGCGGCGGCGGCGGCGGAGGGG
GAGGAGGAGGCGGCGGTGTGGCGGAGCGGCTGGACGACGAGGCGGTGCGA
CAGGCCGTGTGCGCGTGCGACACGCTGCGCAGGCTGTTTGTGAACAGCTA
TAACGTGGATGTGTACGGCGTGGTGCAGCGCACGCTGCCGGCCACGCTGG
TGGTGCTGCTCAAGCTCAAGCAGCACATGTGGCTGTGGCTCAAGCAGCGG
CGTGGCGCGCCGAACGGCGCGCTGCGCGCTCTGCGCGTGGCCGACTGGGT
GGGCGTGGCGTCGCAGCGCCGGCTGGTGGAGGTGGTGGACGACGAGTTGG
TGCGCTGCGTGTACGCCATCGTGGCGCGCTTCCAACCGTTCCTTCACAGC
CTGCTCGCCGGCGGCGAGTTCGACTGGGACGCCTCCGTCAACGACGTGCT
GCGCGCGTTTTTGCGCTACGACGTGCCGTGA