Ggra1368.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra1368.t1
Unique Name	Ggra1368.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	527

Homology

[Close]

BLAST of Ggra1368.t1 vs. uniprot
Match: A0A2V3J1R5 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R5_9FLOR)

HSP 1 Score: 276 bits (706), Expect = 2.930e-83
Identity = 192/440 (43.64%), Postives = 249/440 (56.59%), Query Frame = 0

Query:   92 ALLLGRSLSCGTRLAARVLAALAVPPYVLLCMAGGACATQRAQ----RRRRARAALLLSALRCASFLVVQSVLHAFITYGPSLSRACST-RLLPSGAQLLPHALLPLLSAPLYAALGAEARSSLLLLRPFGGWLHAARALAPRVLLLAVLPPLVAAAPALLLCVAVLWSPLRVLRALLCAVQSTACCLLLWNVLQSWCVLPRRVPLHEARLVTAQLANMRALGHAPDARFIDALHAVSQHHAQLPSFVAFVDASGEAWRSSLAVLLAPLTRVSDSLSAQNASGKAALLXXXXXXXXXXXXXXXVAERLDDEAVRQAVCACDTLRRLFVNSYNVDVYGVVQRTLPATLVVLLKLKQHMWLWLKQRRGAPNGALRALRVADWVGVASQRRLVEVVDDELVRCVYAIVARFQPFLHSLLAGGEFDWDASVNDVLRAFLRYDVP 526
            +L L RS SC   +  R+L  LA   YV + + G   A  RA+    RRR A       A+  A+ LVVQSVLH+FIT G SLS  C+   +LPS   +LP  +L LL AP Y  L  E  SS + LRPF       RALAPR+L+L+  PPL A  P L+    V+ S    + ++  A Q+    LL+WN++Q    +PR + L EAR    QL+     G  P  + + AL  +S H AQL SFV F DASGEAWR++L VLL PL R+++ L A N+S K  LL                A  +D+    +AV AC TL  LFV SY VDVYGVVQRTLPATL  +LKLK+    ++K         +    + + +GV+ QRRLVEVVDDE+VRC YAIVARF  F+ + LAG E +WD S +  L A L++ VP
Sbjct:   69 SLTLSRSASCPVSVLVRMLQILAFALYVAV-IVGAEAALSRARPLIDRRRTA-----FHAVATAALLVVQSVLHSFITQGTSLSAVCAEGSVLPSAKHMLPSVMLALLCAPAYTLLVRELHSSFIALRPFPSLFWRVRALAPRMLVLSAAPPLAALLPVLVFSAGVMRSVSTAVYSVWSAFQAATMSLLVWNLMQGVTNIPRGLSLAEAREEAGQLSKP---GVVPGGKVLLALRTISLHEAQLSSFVGFTDASGEAWRAALGVLLEPLNRMTNILRAHNSSAKVPLLVQAGLGGGGGGVVSG-ATVVDESVAVEAVAACKTLAILFVKSYKVDVYGVVQRTLPATLACVLKLKEESDKFVKGGAQGEGQHVLWQSLKNVMGVSCQRRLVEVVDDEVVRCAYAIVARFSKFVSTFLAGKELEWDRSADGALSALLQFGVP 498

The following BLAST results are available for this feature:

BLAST of Ggra1368.t1 vs. uniprot

BLAST of Ggra1368.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J1R5	2.930e-83	43.64	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..51
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..80
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 205..229
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 130..140
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 105..129
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 281..526
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 166..184
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 185..204
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 141..165
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 255..259
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 100..104
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 230..254
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 81..99
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 260..280
None	No IPR available	TMHMM	TMhelix		coord: 107..129
None	No IPR available	TMHMM	TMhelix		coord: 142..164
None	No IPR available	TMHMM	TMhelix		coord: 189..211
None	No IPR available	TMHMM	TMhelix		coord: 232..254

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:390179..391759 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1368.t1	Ggra1368.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000092_pilon 390179..391759 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra1368.t1 ID=Ggra1368.t1|Name=Ggra1368.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=527bp
MTTPASSAWHRRRAVLSTSNNAPPHARVSAVRHAQPLRADGGGAAPLRRS
SPRGGADGVLRAASARSLAARALSAVAASPSAWRALPLCLLALLLGRSLS
CGTRLAARVLAALAVPPYVLLCMAGGACATQRAQRRRRARAALLLSALRC
ASFLVVQSVLHAFITYGPSLSRACSTRLLPSGAQLLPHALLPLLSAPLYA
ALGAEARSSLLLLRPFGGWLHAARALAPRVLLLAVLPPLVAAAPALLLCV
AVLWSPLRVLRALLCAVQSTACCLLLWNVLQSWCVLPRRVPLHEARLVTA
QLANMRALGHAPDARFIDALHAVSQHHAQLPSFVAFVDASGEAWRSSLAV
LLAPLTRVSDSLSAQNASGKAALLVGGGGGGGGGGGGGGVAERLDDEAVR
QAVCACDTLRRLFVNSYNVDVYGVVQRTLPATLVVLLKLKQHMWLWLKQR
RGAPNGALRALRVADWVGVASQRRLVEVVDDELVRCVYAIVARFQPFLHS
LLAGGEFDWDASVNDVLRAFLRYDVP*