Ggra1366.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1366.t1
Unique NameGgra1366.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:384468..385220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog29760.VIT_01s0010g01670.t01
PFAMsSwi3,zf-CCHC
Max annot lvl35493|Streptophyta
KEGG koko:K10904
GOsGO:0000075,GO:0000076,GO:0000077,GO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0019219,GO:0019222,GO:0022402,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033262,GO:0033554,GO:0034641,GO:0034645,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:1901360,GO:1901363,GO:1901576,GO:1903047,GO:2000104,GO:2000112,GO:2000113
Evalue0.000963
EggNOG OGsKOG3004@1|root,KOG3004@2759|Eukaryota,37KH8@33090|Viridiplantae,3GDF9@35493|Streptophyta
DescriptionTIMELESS-interacting protein
COG categoryD
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1366Ggra1366Gracilaria gracilis GNS1m malegenetig00000092_pilon 384468..385220 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1366.t1.start1Ggra1366.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 384468..384470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1366.t1.CDS1Ggra1366.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 384468..385220 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1366.t1.exon1Ggra1366.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 384468..385220 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1366.t1.stop1Ggra1366.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 385218..385220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1366.t1Ggra1366.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 384468..385220 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1366.t1 ID=Ggra1366.t1|Name=Ggra1366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=251bp
MSMVYKGNAQNHITLPKLRQSHLLLSTPSMIPVQATTLQAGVPRSAPALS
QPEPQKKKPRAAHLMPKLTVEDFSEASFQEAIRIGRKAKARGKPKEGREA
KALGDLLRNMSKWAKQIAPQYSFSEFIFASQALGTNRSLRPMLANLRLAE
FREVNAEFEATPAVDSGAQPNEGGGEVMAEAPPDEFLGCDDPPGDQWEEE
DVMMDRMEMENIQSRTKVPPPSNTEEVAGEAHESRAEQLGTCNEKTTGQL
*
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spliced messenger RNA

>Ggra1366.t1 ID=Ggra1366.t1|Name=Ggra1366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000092_pilon:384468..385220+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGATGGTCTACAAGGGTAATGCTCAGAATCATATCACCCTGCCTAA
GCTTCGTCAAAGTCACCTCCTTCTCTCAACTCCCAGCATGATTCCTGTCC
AGGCTACCACACTGCAAGCGGGCGTTCCTCGCTCCGCCCCAGCCCTGTCT
CAGCCAGAGCCGCAGAAGAAGAAACCACGGGCTGCACACTTGATGCCGAA
ACTCACCGTTGAAGATTTCTCAGAGGCTTCGTTCCAAGAAGCCATCAGAA
TCGGAAGAAAAGCAAAGGCGCGCGGAAAACCAAAAGAGGGACGAGAGGCG
AAAGCATTGGGTGATTTGTTGCGGAACATGTCCAAATGGGCAAAGCAGAT
TGCCCCACAGTATTCGTTTTCGGAATTCATATTTGCATCACAGGCACTGG
GCACGAACAGATCGCTTAGACCGATGCTAGCTAATCTTCGACTGGCAGAA
TTTCGTGAAGTTAATGCCGAGTTCGAAGCGACTCCTGCTGTTGACAGCGG
TGCCCAACCAAATGAAGGTGGTGGGGAAGTCATGGCAGAGGCTCCGCCTG
ATGAGTTTTTGGGATGTGATGATCCGCCTGGTGACCAATGGGAGGAGGAA
GATGTAATGATGGATAGAATGGAAATGGAAAATATTCAAAGTAGAACGAA
AGTGCCACCTCCATCTAACACGGAGGAAGTTGCAGGTGAAGCCCATGAAT
CAAGAGCAGAACAACTGGGAACATGTAACGAGAAAACAACTGGCCAACTC
TAA
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protein sequence of Ggra1366.t1

>Ggra1366.t1 ID=Ggra1366.t1|Name=Ggra1366.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=251bp
MSMVYKGNAQNHITLPKLRQSHLLLSTPSMIPVQATTLQAGVPRSAPALS
QPEPQKKKPRAAHLMPKLTVEDFSEASFQEAIRIGRKAKARGKPKEGREA
KALGDLLRNMSKWAKQIAPQYSFSEFIFASQALGTNRSLRPMLANLRLAE
FREVNAEFEATPAVDSGAQPNEGGGEVMAEAPPDEFLGCDDPPGDQWEEE
DVMMDRMEMENIQSRTKVPPPSNTEEVAGEAHESRAEQLGTCNEKTTGQL
*
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mRNA from alignment at tig00000092_pilon:384468..385220+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1366.t1 ID=Ggra1366.t1|Name=Ggra1366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=753bp|location=Sequence derived from alignment at tig00000092_pilon:384468..385220+ (Gracilaria gracilis GNS1m male)
ATGTCGATGGTCTACAAGGGTAATGCTCAGAATCATATCACCCTGCCTAA
GCTTCGTCAAAGTCACCTCCTTCTCTCAACTCCCAGCATGATTCCTGTCC
AGGCTACCACACTGCAAGCGGGCGTTCCTCGCTCCGCCCCAGCCCTGTCT
CAGCCAGAGCCGCAGAAGAAGAAACCACGGGCTGCACACTTGATGCCGAA
ACTCACCGTTGAAGATTTCTCAGAGGCTTCGTTCCAAGAAGCCATCAGAA
TCGGAAGAAAAGCAAAGGCGCGCGGAAAACCAAAAGAGGGACGAGAGGCG
AAAGCATTGGGTGATTTGTTGCGGAACATGTCCAAATGGGCAAAGCAGAT
TGCCCCACAGTATTCGTTTTCGGAATTCATATTTGCATCACAGGCACTGG
GCACGAACAGATCGCTTAGACCGATGCTAGCTAATCTTCGACTGGCAGAA
TTTCGTGAAGTTAATGCCGAGTTCGAAGCGACTCCTGCTGTTGACAGCGG
TGCCCAACCAAATGAAGGTGGTGGGGAAGTCATGGCAGAGGCTCCGCCTG
ATGAGTTTTTGGGATGTGATGATCCGCCTGGTGACCAATGGGAGGAGGAA
GATGTAATGATGGATAGAATGGAAATGGAAAATATTCAAAGTAGAACGAA
AGTGCCACCTCCATCTAACACGGAGGAAGTTGCAGGTGAAGCCCATGAAT
CAAGAGCAGAACAACTGGGAACATGTAACGAGAAAACAACTGGCCAACTC
TAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:384468..385220+

>Ggra1366.t1 ID=Ggra1366.t1|Name=Ggra1366.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=753bp|location=Sequence derived from alignment at tig00000092_pilon:384468..385220+ (Gracilaria gracilis GNS1m male)
ATGTCGATGGTCTACAAGGGTAATGCTCAGAATCATATCACCCTGCCTAA
GCTTCGTCAAAGTCACCTCCTTCTCTCAACTCCCAGCATGATTCCTGTCC
AGGCTACCACACTGCAAGCGGGCGTTCCTCGCTCCGCCCCAGCCCTGTCT
CAGCCAGAGCCGCAGAAGAAGAAACCACGGGCTGCACACTTGATGCCGAA
ACTCACCGTTGAAGATTTCTCAGAGGCTTCGTTCCAAGAAGCCATCAGAA
TCGGAAGAAAAGCAAAGGCGCGCGGAAAACCAAAAGAGGGACGAGAGGCG
AAAGCATTGGGTGATTTGTTGCGGAACATGTCCAAATGGGCAAAGCAGAT
TGCCCCACAGTATTCGTTTTCGGAATTCATATTTGCATCACAGGCACTGG
GCACGAACAGATCGCTTAGACCGATGCTAGCTAATCTTCGACTGGCAGAA
TTTCGTGAAGTTAATGCCGAGTTCGAAGCGACTCCTGCTGTTGACAGCGG
TGCCCAACCAAATGAAGGTGGTGGGGAAGTCATGGCAGAGGCTCCGCCTG
ATGAGTTTTTGGGATGTGATGATCCGCCTGGTGACCAATGGGAGGAGGAA
GATGTAATGATGGATAGAATGGAAATGGAAAATATTCAAAGTAGAACGAA
AGTGCCACCTCCATCTAACACGGAGGAAGTTGCAGGTGAAGCCCATGAAT
CAAGAGCAGAACAACTGGGAACATGTAACGAGAAAACAACTGGCCAACTC
TAA
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