Ggra1365.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1365.t1
Unique NameGgra1365.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length434
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:381249..384173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1365Ggra1365Gracilaria gracilis GNS1m malegenetig00000092_pilon 381249..384173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1Ggra1365.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 381249..384173 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1.stop1Ggra1365.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 381249..381251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1.CDS1Ggra1365.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 381249..381489 -
Ggra1365.t1.CDS2Ggra1365.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 382440..383066 -
Ggra1365.t1.CDS3Ggra1365.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000092_pilon 383740..384173 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1.exon1Ggra1365.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 381249..381489 -
Ggra1365.t1.exon2Ggra1365.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 382440..383066 -
Ggra1365.t1.exon3Ggra1365.t1.exon3Gracilaria gracilis GNS1m maleexontig00000092_pilon 383740..384173 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1.intron1Ggra1365.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 381490..382439 -
Ggra1365.t1.intron2Ggra1365.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000092_pilon 383067..383739 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1365.t1.start1Ggra1365.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 384171..384173 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1365.t1 ID=Ggra1365.t1|Name=Ggra1365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=434bp
MQTSFIHPFSNPRLRTSRKRPRATCCTASNASRSDEVPKFSSRFGPPPVP
ESIKRLDMLEFQRRQGSTPNPSLPPEVLQSLLDKYPRIKKFHEAMQEEMR
RDDYDPNDYRVYSWAYNYLRPRGMGRPLQALIAFLVSYATVKLVQEYINQ
IIIQTKSKALSLHPNPDVSFRASPPMMLRPDEDQLATNVGVMAYKDMPVF
AYLDREQEIMKQTGVTEWLKHRAKQIPAHTEEEKEERDEKALLSWARPLE
PEEEKLSIEDYFATVEDDEYFYDPTTGNWLFVDGAKGREDGEGGAKDNAQ
NGWDLNADDDETLDIPAEWEPMIQRMLDSNNRVRDGKVESQDDEESGSPP
TVYVSPESEMRRNKGKMRKICGDDDNRMMCDRSAKKVHNTELAKVAKISD
PDERDAAVGNENARHSQYEAGQRSSSPMKTVDE*
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spliced messenger RNA

>Ggra1365.t1 ID=Ggra1365.t1|Name=Ggra1365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1302bp|location=Sequence derived from alignment at tig00000092_pilon:381249..384173- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACCAGTTTTATACATCCATTCTCAAATCCCAGGCTGCGTACTTC
TCGAAAGCGTCCTCGTGCAACATGCTGCACAGCTTCGAATGCATCTCGGT
CAGACGAAGTACCCAAATTCTCGTCGAGATTCGGCCCACCTCCCGTACCA
GAGTCAATCAAGCGCTTGGATATGCTCGAGTTTCAACGTAGACAAGGATC
AACGCCAAATCCTTCTCTACCACCTGAAGTACTGCAATCTCTTTTGGATA
AGTACCCGCGCATAAAGAAGTTCCATGAAGCCATGCAAGAAGAAATGCGC
CGAGATGATTATGACCCCAATGATTATCGGGTCTATTCTTGGGCTTATAA
CTATCTCCGGCCTCGGGGTATGGGACGTCCTTTACAAGCTCTTATTGCGT
TTTTAGTGTCCTATGCGACCGTCAAGCTGGTTCAGGAATATATCAACCAA
ATCATCATCCAGACGAAATCAAAAGCTCTCTCGCTGCACCCGAACCCAGA
TGTATCATTTCGTGCTTCACCCCCGATGATGCTGCGCCCAGATGAGGATC
AGTTAGCCACTAACGTAGGTGTGATGGCTTACAAAGACATGCCGGTTTTC
GCGTACTTGGATAGGGAACAGGAGATTATGAAGCAGACGGGGGTCACAGA
ATGGCTCAAGCATCGCGCCAAGCAAATCCCAGCACATACAGAAGAGGAGA
AGGAAGAACGGGACGAGAAAGCTCTTCTTTCATGGGCAAGACCTCTGGAA
CCTGAAGAAGAGAAGCTTTCGATTGAGGACTATTTCGCCACGGTAGAGGA
TGATGAGTACTTTTACGACCCAACGACTGGAAACTGGCTGTTTGTGGACG
GTGCCAAAGGACGCGAAGATGGTGAGGGTGGCGCCAAGGACAATGCACAG
AATGGATGGGACTTGAATGCGGACGATGATGAAACTTTAGACATTCCGGC
CGAATGGGAGCCTATGATTCAGAGGATGCTGGACAGCAACAACCGAGTGC
GCGACGGCAAGGTAGAATCGCAGGATGATGAGGAATCTGGATCTCCGCCT
ACTGTGTATGTATCACCAGAGTCCGAGATGAGAAGGAATAAGGGAAAGAT
GCGCAAAATATGTGGAGATGATGATAATCGGATGATGTGTGACCGATCCG
CCAAGAAGGTACACAATACAGAATTAGCGAAAGTAGCAAAGATTTCAGAC
CCGGACGAACGCGATGCTGCTGTGGGAAATGAAAATGCGAGGCACAGTCA
GTATGAGGCCGGTCAGCGTTCCAGTTCTCCAATGAAGACTGTGGACGAGT
GA
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protein sequence of Ggra1365.t1

>Ggra1365.t1 ID=Ggra1365.t1|Name=Ggra1365.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=434bp
MQTSFIHPFSNPRLRTSRKRPRATCCTASNASRSDEVPKFSSRFGPPPVP
ESIKRLDMLEFQRRQGSTPNPSLPPEVLQSLLDKYPRIKKFHEAMQEEMR
RDDYDPNDYRVYSWAYNYLRPRGMGRPLQALIAFLVSYATVKLVQEYINQ
IIIQTKSKALSLHPNPDVSFRASPPMMLRPDEDQLATNVGVMAYKDMPVF
AYLDREQEIMKQTGVTEWLKHRAKQIPAHTEEEKEERDEKALLSWARPLE
PEEEKLSIEDYFATVEDDEYFYDPTTGNWLFVDGAKGREDGEGGAKDNAQ
NGWDLNADDDETLDIPAEWEPMIQRMLDSNNRVRDGKVESQDDEESGSPP
TVYVSPESEMRRNKGKMRKICGDDDNRMMCDRSAKKVHNTELAKVAKISD
PDERDAAVGNENARHSQYEAGQRSSSPMKTVDE*
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mRNA from alignment at tig00000092_pilon:381249..384173-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1365.t1 ID=Ggra1365.t1|Name=Ggra1365.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2925bp|location=Sequence derived from alignment at tig00000092_pilon:381249..384173- (Gracilaria gracilis GNS1m male)
ATGCAAACCAGTTTTATACATCCATTCTCAAATCCCAGGCTGCGTACTTC
TCGAAAGCGTCCTCGTGCAACATGCTGCACAGCTTCGAATGCATCTCGGT
CAGACGAAGTACCCAAATTCTCGTCGAGATTCGGCCCACCTCCCGTACCA
GAGTCAATCAAGCGCTTGGATATGCTCGAGTTTCAACGTAGACAAGGATC
AACGCCAAATCCTTCTCTACCACCTGAAGTACTGCAATCTCTTTTGGATA
AGTACCCGCGCATAAAGAAGTTCCATGAAGCCATGCAAGAAGAAATGCGC
CGAGATGATTATGACCCCAATGATTATCGGGTCTATTCTTGGGCTTATAA
CTATCTCCGGCCTCGGGGTATGGGACGTCCTTTACAAGCTCTTATTGCGT
TTTTAGTGTCCTATGCGACCGTCAAGCTGGTTCAGTATGTCAGAAGTCGG
GTGTCACAGGTTACAGTGATGAACGCTCTCGTATCTGTGGACACTTTCTC
TACAGCTGTGTTTGCTGGAATTGTGCCGGTATTACTATGTTTGTGGGCTT
TGTACAGAGCCCATCACGATGGTGTCCATACCGATGGTGTACGGCGTTCG
CTTGTGATGTTCTGCCTCACTTCAATAGCGCTTCCGGCAGTTTGGGCGAT
GGCAGCTACATCGAATGTTGGTCCGGCACTTGTTTGTTCCACATGGGTGC
GATGCATGCTCTTCTTTCCAATACTGGGTTGGATAGACATACGAAGAGAA
GCCAGCATCGGGAGCGCTCAATTAGCAAAGGTGTACAGAATGTGGAGACT
GCTGGCGACTGCTACTGTCCTTTGTTTCGGTAGCTTGCTGCGAGTGTTGA
GTTTATTGGTGCCGCACGAGCTTCCAAGCACAGTTTTTGGACGGCGAGCG
AATGCTTTGAGGGTTGCGCTAGGGAAAAGGTTTCCGGTGGCATGTTCGCT
GTGTAATGATCCACGAGGGTTATTCCTGTTGGGGGGCTTGGTTGTAACGG
GGTTGGTCGCGTACTCGATATACCTACTCATTTTTGTTACAGACTGCGGG
CGAATCAACTGTCATCGAGAGTGTGAGTCTGTGCTAACGTCCTTCTGCGT
AAAGAAGGGAATATATCAACCAAATCATCATCCAGACGAAATCAAAAGCT
CTCTCGCTGCACCCGAACCCAGATGTATCATTTCGTGCTTCACCCCCGAT
GATGCTGCGCCCAGATGAGGATCAGTTAGCCACTAACGTAGGTGTGATGG
CTTACAAAGACATGCCGGTTTTCGCGTACTTGGATAGGGAACAGGAGATT
ATGAAGCAGACGGGGGTCACAGAATGGCTCAAGCATCGCGCCAAGCAAAT
CCCAGCACATACAGAAGAGGAGAAGGAAGAACGGGACGAGAAAGCTCTTC
TTTCATGGGCAAGACCTCTGGAACCTGAAGAAGAGAAGCTTTCGATTGAG
GACTATTTCGCCACGGTAGAGGATGATGAGTACTTTTACGACCCAACGAC
TGGAAACTGGCTGTTTGTGGACGGTGCCAAAGGACGCGAAGATGGTGAGG
GTGGCGCCAAGGACAATGCACAGAATGGATGGGACTTGAATGCGGACGAT
GATGAAACTTTAGACATTCCGGCCGAATGGGAGCCTATGATTCAGAGGAT
GCTGGACAGCAACAACCGAGTGCGCGACGGCAAGGTAGAATCGCAGGATG
ATGAGGAATCTGGATCTCCGCCTACTGTGTATGTGTAAGTGGTGCGGGTT
GAGTGGGCTCGTCACGAAAAACAATTTCGCGGAGACTTGTGTTTGTGGGC
GCCAGATGCAGAGTGTTTTACTATGTAGGGGCGAGGCGCTGAGCTTTCAT
CAACAGTATCTACGCGTGTGGGGTTTGCTGGTGGCGATCGGCTAAAAAAC
ACGATGCTACAATAAAGCAATGCAGAGTGGTTCTGTTTTCGAAATGTCGC
TCTTCGTGGCGATGCGGGTCGCCTCAAGCTGTCTGACATGCAGATGATGC
CATGGGCCACGGAGATGACGTTCCGTAGAACATGGTCATGTTTACTTGAT
CTTAGGGAGAGAGCAGGTGCAATGACATGCAAAGAGATGGTATGCGATCC
GGACCACAAGGCAGCCTGTATCACACAAGACAAGCAAGAAAAGAAGAGTG
AGCGGGTAAGATTGGGGGAACAGGGCAGCTGCGCGAACGCAAGCTGGCCC
AGGGTCATAAATTAAGCGCCCAAAGCCACCGTTGCGGTAACCTTGTGAAC
GTCAAGCTCCCTGCCAAAAGCAAGTCCGCGAGGGACCGTGGCGTGCAATG
GGTGCTCTCGATCCAGCCCACGCCTCCATCTTGAATCGGCAGTGAGCGGC
GCCAGGTAAGTATGACCAGACTCTCGCGGGATGCCACTTCCGACCAAGGC
CGCCCCCTTTTATAGGCTTTGCGGAGTCTCACACGGCGGTCAACTTTCGT
CAAAACTTCGTGTAATTTGAAAAGAAGTTGAAATAGTTCGCCAGAAATAG
TTCCAGTTCGAACGACCGGTCGCCACTTGTACAGTAGCAAAAATCCAGTC
AAAAGTTTGAATCGGTACAGAATCCATGAATCCATTCAGCAAACAACAAC
TCTGCAATTTGAATTCGCAGCGAGTATTGATCGTCGACACGAAGAAGCTT
GTCGTCAACAAAACATGATTCCTCTAAGAGAAAGATCACCAGAGTCCGAG
ATGAGAAGGAATAAGGGAAAGATGCGCAAAATATGTGGAGATGATGATAA
TCGGATGATGTGTGACCGATCCGCCAAGAAGGTACACAATACAGAATTAG
CGAAAGTAGCAAAGATTTCAGACCCGGACGAACGCGATGCTGCTGTGGGA
AATGAAAATGCGAGGCACAGTCAGTATGAGGCCGGTCAGCGTTCCAGTTC
TCCAATGAAGACTGTGGACGAGTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:381249..384173-

>Ggra1365.t1 ID=Ggra1365.t1|Name=Ggra1365.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1302bp|location=Sequence derived from alignment at tig00000092_pilon:381249..384173- (Gracilaria gracilis GNS1m male)
ATGCAAACCAGTTTTATACATCCATTCTCAAATCCCAGGCTGCGTACTTC
TCGAAAGCGTCCTCGTGCAACATGCTGCACAGCTTCGAATGCATCTCGGT
CAGACGAAGTACCCAAATTCTCGTCGAGATTCGGCCCACCTCCCGTACCA
GAGTCAATCAAGCGCTTGGATATGCTCGAGTTTCAACGTAGACAAGGATC
AACGCCAAATCCTTCTCTACCACCTGAAGTACTGCAATCTCTTTTGGATA
AGTACCCGCGCATAAAGAAGTTCCATGAAGCCATGCAAGAAGAAATGCGC
CGAGATGATTATGACCCCAATGATTATCGGGTCTATTCTTGGGCTTATAA
CTATCTCCGGCCTCGGGGTATGGGACGTCCTTTACAAGCTCTTATTGCGT
TTTTAGTGTCCTATGCGACCGTCAAGCTGGTTCAGGAATATATCAACCAA
ATCATCATCCAGACGAAATCAAAAGCTCTCTCGCTGCACCCGAACCCAGA
TGTATCATTTCGTGCTTCACCCCCGATGATGCTGCGCCCAGATGAGGATC
AGTTAGCCACTAACGTAGGTGTGATGGCTTACAAAGACATGCCGGTTTTC
GCGTACTTGGATAGGGAACAGGAGATTATGAAGCAGACGGGGGTCACAGA
ATGGCTCAAGCATCGCGCCAAGCAAATCCCAGCACATACAGAAGAGGAGA
AGGAAGAACGGGACGAGAAAGCTCTTCTTTCATGGGCAAGACCTCTGGAA
CCTGAAGAAGAGAAGCTTTCGATTGAGGACTATTTCGCCACGGTAGAGGA
TGATGAGTACTTTTACGACCCAACGACTGGAAACTGGCTGTTTGTGGACG
GTGCCAAAGGACGCGAAGATGGTGAGGGTGGCGCCAAGGACAATGCACAG
AATGGATGGGACTTGAATGCGGACGATGATGAAACTTTAGACATTCCGGC
CGAATGGGAGCCTATGATTCAGAGGATGCTGGACAGCAACAACCGAGTGC
GCGACGGCAAGGTAGAATCGCAGGATGATGAGGAATCTGGATCTCCGCCT
ACTGTGTATGTATCACCAGAGTCCGAGATGAGAAGGAATAAGGGAAAGAT
GCGCAAAATATGTGGAGATGATGATAATCGGATGATGTGTGACCGATCCG
CCAAGAAGGTACACAATACAGAATTAGCGAAAGTAGCAAAGATTTCAGAC
CCGGACGAACGCGATGCTGCTGTGGGAAATGAAAATGCGAGGCACAGTCA
GTATGAGGCCGGTCAGCGTTCCAGTTCTCCAATGAAGACTGTGGACGAGT
GA
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