Ggra1357.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1357.t1
Unique NameGgra1357.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length396
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:356349..357536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1357Ggra1357Gracilaria gracilis GNS1m malegenetig00000092_pilon 356349..357536 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1357.t1.start1Ggra1357.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 356349..356351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1357.t1.CDS1Ggra1357.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 356349..357536 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1357.t1.exon1Ggra1357.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 356349..357536 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1357.t1.stop1Ggra1357.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 357534..357536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1357.t1Ggra1357.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 356349..357536 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1357.t1 ID=Ggra1357.t1|Name=Ggra1357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=396bp
MVLSPLKACYPSLQSPCLSVSAVLVFVAICAFHVHRLAASDPISLQTGLH
KLVLPGSLHASDPPLASPVDATTVVHHARAYGAFPFSSHSHDSLLYPILQ
ASQQHSLPPTLFHDRSPRALMRTSDRLYPVESHSTQTSFPFETTRANYVS
DDQTRAPHSLHAISDSLHSAMSPSQHIETLQPVEQEAPRRHPVIEAFHSI
IGSSPQSKTLDTGNRLHTSQSAVALTDRSEKPASVRATDLVASDHDTRAV
LVPKRETVAEMESDKTINFSEDEQMQQDASSSTLETHTDEAVPIVREADA
VGSSGIETEAKLEVPSISSEGKRDGQVHDAPNRKGLLNLFWGSSRSKEDV
GNVGEGQGITMDSAVKKDEVKVSIEDTNILAAEKNMEKDNEVETS*
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spliced messenger RNA

>Ggra1357.t1 ID=Ggra1357.t1|Name=Ggra1357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000092_pilon:356349..357536+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTCTTTCGCCTTTGAAGGCGTGCTATCCTTCGCTGCAGAGCCCCTG
TTTGTCTGTTTCGGCTGTGTTGGTGTTCGTTGCCATCTGTGCGTTTCATG
TTCATCGCCTGGCTGCTTCCGACCCCATTTCGTTGCAAACAGGCCTTCAC
AAGTTGGTTCTACCAGGCAGTCTGCACGCTTCTGATCCGCCACTCGCTTC
TCCGGTTGATGCCACCACCGTAGTGCATCATGCGCGCGCATATGGGGCTT
TTCCTTTCTCTTCCCATTCGCATGACTCTCTTTTGTATCCTATCTTGCAA
GCGTCACAACAGCATTCACTTCCTCCTACCTTGTTTCACGATCGTTCTCC
ACGCGCCCTTATGCGCACGTCTGATCGGTTGTATCCAGTGGAATCACATT
CTACTCAAACCAGTTTTCCCTTCGAGACCACGCGTGCCAACTACGTCAGT
GACGACCAAACTCGCGCCCCTCATAGCCTTCACGCAATTAGCGATTCACT
GCACAGCGCGATGTCGCCTTCTCAACACATTGAAACGCTTCAGCCAGTGG
AACAAGAAGCTCCACGACGTCATCCAGTAATCGAAGCTTTCCACTCCATC
ATAGGCTCATCTCCACAATCCAAAACTCTCGATACTGGAAACCGTCTCCA
TACATCACAATCTGCTGTTGCACTAACTGACCGCTCTGAAAAGCCTGCTA
GTGTGCGTGCAACCGACTTGGTCGCTTCAGACCATGATACCCGCGCTGTG
CTAGTGCCCAAGAGAGAAACTGTTGCCGAAATGGAGTCCGACAAGACAAT
CAATTTCTCTGAGGATGAGCAGATGCAGCAAGATGCGTCTAGTTCCACTT
TGGAGACGCACACGGATGAAGCTGTACCTATAGTCAGGGAGGCCGATGCA
GTCGGTTCGTCAGGAATAGAAACCGAGGCGAAACTGGAAGTCCCTTCTAT
TTCCTCGGAGGGGAAACGCGACGGACAAGTGCACGATGCTCCTAACAGAA
AAGGCCTTTTGAATTTATTTTGGGGTTCTTCTCGATCAAAGGAAGATGTT
GGCAATGTCGGAGAGGGGCAAGGGATCACCATGGATTCTGCCGTCAAGAA
AGATGAGGTCAAAGTATCTATAGAAGACACCAACATTCTTGCTGCTGAGA
AGAACATGGAGAAAGACAACGAAGTTGAAACGTCCTAA
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protein sequence of Ggra1357.t1

>Ggra1357.t1 ID=Ggra1357.t1|Name=Ggra1357.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=396bp
MVLSPLKACYPSLQSPCLSVSAVLVFVAICAFHVHRLAASDPISLQTGLH
KLVLPGSLHASDPPLASPVDATTVVHHARAYGAFPFSSHSHDSLLYPILQ
ASQQHSLPPTLFHDRSPRALMRTSDRLYPVESHSTQTSFPFETTRANYVS
DDQTRAPHSLHAISDSLHSAMSPSQHIETLQPVEQEAPRRHPVIEAFHSI
IGSSPQSKTLDTGNRLHTSQSAVALTDRSEKPASVRATDLVASDHDTRAV
LVPKRETVAEMESDKTINFSEDEQMQQDASSSTLETHTDEAVPIVREADA
VGSSGIETEAKLEVPSISSEGKRDGQVHDAPNRKGLLNLFWGSSRSKEDV
GNVGEGQGITMDSAVKKDEVKVSIEDTNILAAEKNMEKDNEVETS*
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mRNA from alignment at tig00000092_pilon:356349..357536+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1357.t1 ID=Ggra1357.t1|Name=Ggra1357.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00000092_pilon:356349..357536+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTCGCCTTTGAAGGCGTGCTATCCTTCGCTGCAGAGCCCCTG
TTTGTCTGTTTCGGCTGTGTTGGTGTTCGTTGCCATCTGTGCGTTTCATG
TTCATCGCCTGGCTGCTTCCGACCCCATTTCGTTGCAAACAGGCCTTCAC
AAGTTGGTTCTACCAGGCAGTCTGCACGCTTCTGATCCGCCACTCGCTTC
TCCGGTTGATGCCACCACCGTAGTGCATCATGCGCGCGCATATGGGGCTT
TTCCTTTCTCTTCCCATTCGCATGACTCTCTTTTGTATCCTATCTTGCAA
GCGTCACAACAGCATTCACTTCCTCCTACCTTGTTTCACGATCGTTCTCC
ACGCGCCCTTATGCGCACGTCTGATCGGTTGTATCCAGTGGAATCACATT
CTACTCAAACCAGTTTTCCCTTCGAGACCACGCGTGCCAACTACGTCAGT
GACGACCAAACTCGCGCCCCTCATAGCCTTCACGCAATTAGCGATTCACT
GCACAGCGCGATGTCGCCTTCTCAACACATTGAAACGCTTCAGCCAGTGG
AACAAGAAGCTCCACGACGTCATCCAGTAATCGAAGCTTTCCACTCCATC
ATAGGCTCATCTCCACAATCCAAAACTCTCGATACTGGAAACCGTCTCCA
TACATCACAATCTGCTGTTGCACTAACTGACCGCTCTGAAAAGCCTGCTA
GTGTGCGTGCAACCGACTTGGTCGCTTCAGACCATGATACCCGCGCTGTG
CTAGTGCCCAAGAGAGAAACTGTTGCCGAAATGGAGTCCGACAAGACAAT
CAATTTCTCTGAGGATGAGCAGATGCAGCAAGATGCGTCTAGTTCCACTT
TGGAGACGCACACGGATGAAGCTGTACCTATAGTCAGGGAGGCCGATGCA
GTCGGTTCGTCAGGAATAGAAACCGAGGCGAAACTGGAAGTCCCTTCTAT
TTCCTCGGAGGGGAAACGCGACGGACAAGTGCACGATGCTCCTAACAGAA
AAGGCCTTTTGAATTTATTTTGGGGTTCTTCTCGATCAAAGGAAGATGTT
GGCAATGTCGGAGAGGGGCAAGGGATCACCATGGATTCTGCCGTCAAGAA
AGATGAGGTCAAAGTATCTATAGAAGACACCAACATTCTTGCTGCTGAGA
AGAACATGGAGAAAGACAACGAAGTTGAAACGTCCTAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:356349..357536+

>Ggra1357.t1 ID=Ggra1357.t1|Name=Ggra1357.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1188bp|location=Sequence derived from alignment at tig00000092_pilon:356349..357536+ (Gracilaria gracilis GNS1m male)
ATGGTTCTTTCGCCTTTGAAGGCGTGCTATCCTTCGCTGCAGAGCCCCTG
TTTGTCTGTTTCGGCTGTGTTGGTGTTCGTTGCCATCTGTGCGTTTCATG
TTCATCGCCTGGCTGCTTCCGACCCCATTTCGTTGCAAACAGGCCTTCAC
AAGTTGGTTCTACCAGGCAGTCTGCACGCTTCTGATCCGCCACTCGCTTC
TCCGGTTGATGCCACCACCGTAGTGCATCATGCGCGCGCATATGGGGCTT
TTCCTTTCTCTTCCCATTCGCATGACTCTCTTTTGTATCCTATCTTGCAA
GCGTCACAACAGCATTCACTTCCTCCTACCTTGTTTCACGATCGTTCTCC
ACGCGCCCTTATGCGCACGTCTGATCGGTTGTATCCAGTGGAATCACATT
CTACTCAAACCAGTTTTCCCTTCGAGACCACGCGTGCCAACTACGTCAGT
GACGACCAAACTCGCGCCCCTCATAGCCTTCACGCAATTAGCGATTCACT
GCACAGCGCGATGTCGCCTTCTCAACACATTGAAACGCTTCAGCCAGTGG
AACAAGAAGCTCCACGACGTCATCCAGTAATCGAAGCTTTCCACTCCATC
ATAGGCTCATCTCCACAATCCAAAACTCTCGATACTGGAAACCGTCTCCA
TACATCACAATCTGCTGTTGCACTAACTGACCGCTCTGAAAAGCCTGCTA
GTGTGCGTGCAACCGACTTGGTCGCTTCAGACCATGATACCCGCGCTGTG
CTAGTGCCCAAGAGAGAAACTGTTGCCGAAATGGAGTCCGACAAGACAAT
CAATTTCTCTGAGGATGAGCAGATGCAGCAAGATGCGTCTAGTTCCACTT
TGGAGACGCACACGGATGAAGCTGTACCTATAGTCAGGGAGGCCGATGCA
GTCGGTTCGTCAGGAATAGAAACCGAGGCGAAACTGGAAGTCCCTTCTAT
TTCCTCGGAGGGGAAACGCGACGGACAAGTGCACGATGCTCCTAACAGAA
AAGGCCTTTTGAATTTATTTTGGGGTTCTTCTCGATCAAAGGAAGATGTT
GGCAATGTCGGAGAGGGGCAAGGGATCACCATGGATTCTGCCGTCAAGAA
AGATGAGGTCAAAGTATCTATAGAAGACACCAACATTCTTGCTGCTGAGA
AGAACATGGAGAAAGACAACGAAGTTGAAACGTCCTAA
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