Ggra1336.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1336.t1
Unique NameGgra1336.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:223529..224227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX33868
PFAMsPentapeptide
Max annot lvl2759|Eukaryota
Evalue1.51e-22
EggNOG OGs28M7V@1|root,2QTR1@2759|Eukaryota
DescriptionPentapeptide repeats (9 copies)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1336Ggra1336Gracilaria gracilis GNS1m malegenetig00000092_pilon 223529..224227 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1.start1Ggra1336.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 223529..223531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1.CDS1Ggra1336.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 223529..224227 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1.exon1Ggra1336.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 223529..224227 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1.stop1Ggra1336.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 224225..224227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1Ggra1336.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 223529..224227 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MSAFAPPLPRAPPRRRTAPRCSAHTRAAAAAAAAAAAVGVASAAPRALAA
LALSASLLTAQPVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARD
SLLDLRECDLRNADLSAFDLSGAIAADADLSGARLVDAQLSKSYAPRARL
RGADFTNAVADRVTFDGADLTDALFVNAVLSDSTFDDATLENVDFTDVYI
GDFAQRSLCKNATLRGVNPTTGASTRESLGCR*
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spliced messenger RNA

>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:223529..224227+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atgagcgccttcgccccgccgctgccgcgcgcgccgccgcgccgccgcac
cgcgccgcgctgcagcgcgcATACCCGcgccgccgccgccgccgccgccg
ccgccgccgcAGTCggcgtggcgtccgccgcgccgcgcgcgctggcggcg
ctggcgctgtcggcgtcgctTCTGACGGCGCAGCCGGTGCTGACGCACGC
GGCGGGCTCGCCGCCGCGCCTGCCGCCCATCGACCGCGCCAACGCGCAGC
GCTGCCAGCCGACGTCGTCGGCCATCGGCCAGGCCAACGCGGCGCGCGAC
TCGCTACTGGACCTGCGCGAGTGCGACCTGCGCAACGCCGACCTGTCGGC
GTTCGACCTGTCGGGCGCCATCGCCGCCGACGCCGACCTCAGCGGCGCGC
GCCTCGTGGACGCGCAGCTGTCCAAGAGCTACGCGCCGCGCGCGCGGCTG
CGTGGCGCCGATTTCACCAACGCCGTCGCGGACCGCGTCACCTTTGACGG
CGCTGACCTTACTGACGCGCTGTTTGTCAACGCCGTGCTTAGCGACTCCA
CGTTCGATGACGCCACGCTGGAGAACGTGGACTTTACCGACGTGTACATT
GGCGACTTTGCGCAGCGCAGCTTGTGCAAGAACGCCACGCTGCGCGGCGT
CAACCCCACCACAGGCGCGTCCACGCGCGAGAGCCTTGGCTGTCGATAA
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protein sequence of Ggra1336.t1

>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSAFAPPLPRAPPRRRTAPRCSAHTRAAAAAAAAAAAVGVASAAPRALAA
LALSASLLTAQPVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARD
SLLDLRECDLRNADLSAFDLSGAIAADADLSGARLVDAQLSKSYAPRARL
RGADFTNAVADRVTFDGADLTDALFVNAVLSDSTFDDATLENVDFTDVYI
GDFAQRSLCKNATLRGVNPTTGASTRESLGCR*
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mRNA from alignment at tig00000092_pilon:223529..224227+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:223529..224227+ (Gracilaria gracilis GNS1m male)
atgagcgccttcgccccgccgctgccgcgcgcgccgccgcgccgccgcac
cgcgccgcgctgcagcgcgcATACCCGcgccgccgccgccgccgccgccg
ccgccgccgcAGTCggcgtggcgtccgccgcgccgcgcgcgctggcggcg
ctggcgctgtcggcgtcgctTCTGACGGCGCAGCCGGTGCTGACGCACGC
GGCGGGCTCGCCGCCGCGCCTGCCGCCCATCGACCGCGCCAACGCGCAGC
GCTGCCAGCCGACGTCGTCGGCCATCGGCCAGGCCAACGCGGCGCGCGAC
TCGCTACTGGACCTGCGCGAGTGCGACCTGCGCAACGCCGACCTGTCGGC
GTTCGACCTGTCGGGCGCCATCGCCGCCGACGCCGACCTCAGCGGCGCGC
GCCTCGTGGACGCGCAGCTGTCCAAGAGCTACGCGCCGCGCGCGCGGCTG
CGTGGCGCCGATTTCACCAACGCCGTCGCGGACCGCGTCACCTTTGACGG
CGCTGACCTTACTGACGCGCTGTTTGTCAACGCCGTGCTTAGCGACTCCA
CGTTCGATGACGCCACGCTGGAGAACGTGGACTTTACCGACGTGTACATT
GGCGACTTTGCGCAGCGCAGCTTGTGCAAGAACGCCACGCTGCGCGGCGT
CAACCCCACCACAGGCGCGTCCACGCGCGAGAGCCTTGGCTGTCGATAA
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Coding sequence (CDS) from alignment at tig00000092_pilon:223529..224227+

>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000092_pilon:223529..224227+ (Gracilaria gracilis GNS1m male)
atgagcgccttcgccccgccgctgccgcgcgcgccgccgcgccgccgcac
cgcgccgcgctgcagcgcgcATACCCGcgccgccgccgccgccgccgccg
ccgccgccgcAGTCggcgtggcgtccgccgcgccgcgcgcgctggcggcg
ctggcgctgtcggcgtcgctTCTGACGGCGCAGCCGGTGCTGACGCACGC
GGCGGGCTCGCCGCCGCGCCTGCCGCCCATCGACCGCGCCAACGCGCAGC
GCTGCCAGCCGACGTCGTCGGCCATCGGCCAGGCCAACGCGGCGCGCGAC
TCGCTACTGGACCTGCGCGAGTGCGACCTGCGCAACGCCGACCTGTCGGC
GTTCGACCTGTCGGGCGCCATCGCCGCCGACGCCGACCTCAGCGGCGCGC
GCCTCGTGGACGCGCAGCTGTCCAAGAGCTACGCGCCGCGCGCGCGGCTG
CGTGGCGCCGATTTCACCAACGCCGTCGCGGACCGCGTCACCTTTGACGG
CGCTGACCTTACTGACGCGCTGTTTGTCAACGCCGTGCTTAGCGACTCCA
CGTTCGATGACGCCACGCTGGAGAACGTGGACTTTACCGACGTGTACATT
GGCGACTTTGCGCAGCGCAGCTTGTGCAAGAACGCCACGCTGCGCGGCGT
CAACCCCACCACAGGCGCGTCCACGCGCGAGAGCCTTGGCTGTCGATAA
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