Ggra1336.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1336.t1
Unique NameGgra1336.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Homology
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A5J4YXE5 (Thylakoid lumenal 17.4 kDa protein, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YXE5_PORPP)

HSP 1 Score: 132 bits (333), Expect = 6.830e-35
Identity = 110/176 (62.50%), Postives = 123/176 (69.89%), Query Frame = 0
Query:   56 SLLTAQPVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGC 231
            S L AQ V  HA   PP++PPI+ A+ +RC PTSSA+G ANAARD+LLDLRECDL  ADL  FD+SGA     XXXXXX      SK+YA RA  RG             XXXXXXXX XXXXXXXXXXXXXXXX   DF+D YIG F QR+LCKN TL+G NP+TG STRESLGC
Sbjct:   39 STLNAQDV--HAL-PPPKMPPINYADKKRCNPTSSAMGAANAARDTLLDLRECDLTKADLHGFDISGAFXXXXXXXXXXLEDVVMSKTYANRASFRGANFSNGVVDRVMFXXXXXXXXXXXXXXXXXXXXXXXXXENTDFSDAYIGLFGQRALCKNPTLKGENPSTGESTRESLGC 211          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S1TN31 (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TN31_9RHOD)

HSP 1 Score: 131 bits (330), Expect = 3.910e-34
Identity = 91/178 (51.12%), Postives = 108/178 (60.67%), Query Frame = 0
Query:   56 SLLTAQPVLTHAAGSP-PRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGCR 232
            SL+T   +   A+  P PRLPPI+  +  RC P+SSA+GQANAARD LLDLR+CDL   +   +D+SGAI   A            SK+YA  A  R                      +  XXXXXXXXXXXXXX   DFTDVYIGDFAQ+S+C+N TL+G NPTTGA TRESLGCR
Sbjct:   65 SLVTLVTLPDAASALPAPRLPPINLRDPNRCTPSSSAMGQANAARDKLLDLRQCDLSGKNFQGYDISGAIMQKAKVDGADMTDIVMSKAYASDASFRDVIFRNGVVDRVQFDRTDLTGSIFEXXXXXXXXXXXXXXTNVDFTDVYIGDFAQKSMCRNPTLKGENPTTGAPTRESLGCR 242          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S4IZ25 (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4IZ25_9EUKA)

HSP 1 Score: 122 bits (306), Expect = 6.890e-31
Identity = 98/159 (61.64%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   73 RLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGC 231
            R PPID+    RC+  SSA+GQANAARDSL DLREC +  AD +AFD+SGA+ A+             SK YAP A   G        XXXXXXXXXXXXX XXXXXXXXXXXXXXXX   DFTD YIGDF QR LCKN +L G NP+TGA TRES GC
Sbjct:   52 RFPPIDKGKKDRCKFLSSAMGQANAARDSLYDLRECKMSGADAAAFDISGALMAEGDFSKVNFKETQLSKVYAPGANFDGADFTNGIVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDADFTDAYIGDFDQRKLCKNKSLNGENPSTGAPTRESAGC 210          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A2V3J1W0 (Thylakoid lumenal 17.4 kDa protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1W0_9FLOR)

HSP 1 Score: 122 bits (307), Expect = 7.200e-31
Identity = 105/160 (65.62%), Postives = 111/160 (69.38%), Query Frame = 0
Query:   73 RLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGCR 232
            +LPPIDRAN  RCQPTSSAIGQANAARD+LLDLREC+L +                XXXXXX      SKSYA  A  R            XXXXXXXXX +  XXXXXXXXXXXXXXXXX FTDVYIGDFAQRSLCKN TL+G NP TGA TRESLGCR
Sbjct:   68 KLPPIDRANPTRCQPTSSAIGQANAARDTLLDLRECNLSSRXXXXXXXXXXXXXXXXXXXXXLTDVQLSKSYAFSASFRATDFTNAIADRVXXXXXXXXXVIFVXXXXXXXXXXXXXXXXXXFTDVYIGDFAQRSLCKNPTLKGTNPLTGAPTRESLGCR 227          
BLAST of Ggra1336.t1 vs. uniprot
Match: R7QT19 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QT19_CHOCR)

HSP 1 Score: 111 bits (278), Expect = 1.490e-26
Identity = 109/184 (59.24%), Postives = 121/184 (65.76%), Query Frame = 0
Query:   53 LSASLLTAQPVL----THAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGCR 232
            L A+ LT  P+       AAG+  +LPPIDRAN  RC P SS+IGQANAARD +LDLRECD                   XXXXXXXXXX  SKSYAP A+ R              XXXXXXXX XXXXXXXXXXXXXXXXXXX   DVYIGDFAQ+S+C+N T++G NP TGA TRESLGCR
Sbjct:   48 LIAAALTVGPLSLPSPAEAAGTM-KLPPIDRANPSRCMPASSSIGQANAARDKVLDLRECDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSKSYAPNAKFRDVDFTNAIADRVTFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVYIGDFAQKSICRNPTVKGQNPVTGAPTRESLGCR 230          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S2H4B8 (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2H4B8_9EUKA)

HSP 1 Score: 110 bits (274), Expect = 5.050e-26
Identity = 96/159 (60.38%), Postives = 108/159 (67.92%), Query Frame = 0
Query:   73 RLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGC 231
            + PPIDR N  RC+ +SSA+GQANAARDSL DLREC +   + + FD+SGA+ A+             SK YAP A+  GXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXX        DFT+ YIG F  R LCKN TL G NP TGA TR S GC
Sbjct:   64 KFPPIDRKNKDRCKFSSSAMGQANAARDSLYDLRECAMSETNAAGFDISGALMANGDFSKVDFKEAQLSKVYAPGAKFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDEADLKDADFTEAYIGMFDLRKLCKNPTLDGENPITGAPTRASAGC 222          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A1X6PH54 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PH54_PORUM)

HSP 1 Score: 112 bits (279), Expect = 5.460e-26
Identity = 117/180 (65.00%), Postives = 130/180 (72.22%), Query Frame = 0
Query:   53 LSASLLTAQPVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGCR 232
            L+ +L    P   HA    P+LPPID+ +  RC  TSSA+GQANAARDSLLDLREC L  ADLS FD         XXXXXXXXXXXX  SY  +  X  XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX    D+TDVY+G+FA R++CKN +L G NP TG  TRESLGCR
Sbjct:  128 LALALSVGVPTAAHAVLPAPKLPPIDKNDKTRCNVTSSAMGQANAARDSLLDLRECPLSAADLSGFDXXXXXXXXXXXXXXXXXXXXXXXSYVFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKNTDWTDVYMGEFATRAVCKNTSLAGTNPVTGEDTRESLGCR 307          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S3B0S2 (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B0S2_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 4.350e-25
Identity = 106/171 (61.99%), Postives = 116/171 (67.84%), Query Frame = 0
Query:   62 PVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGCR 232
            P L     S  + PPID  N  RCQ +SSA+GQANAARDSL DLR+C +       FD+SGA+ A              SK YA    X  XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXDFT+ YIGD+ QR LCKN  L+G NP TGA TRES GCR
Sbjct:   59 PALADGDTSKFKFPPIDNTNKNRCQFSSSAMGQANAARDSLYDLRQCSMAGTMAMGFDISGALLAGGDFSGVNFKEAQLSKVYAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDFTEAYIGDYDQRKLCKNPKLKGENPKTGAPTRESAGCR 229          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S0LGG3 (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGG3_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 4.950e-25
Identity = 101/159 (63.52%), Postives = 113/159 (71.07%), Query Frame = 0
Query:   73 RLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGC 231
            + PPIDR+   RC  + SA+GQANAARD L DLREC +  A  ++ D+SGA+ A              SK YAP A   GXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX FT+ Y+G F QR LCKN TL+G NP TGA TRES GC
Sbjct:   60 KFPPIDRSKKDRCTFSGSAMGQANAARDKLYDLRECKMSGASAASLDISGALMAQGDFSKADFKEAQLSKVYAPGAVFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTEAYVGQFDQRKLCKNPTLKGENPVTGAGTRESAGC 218          
BLAST of Ggra1336.t1 vs. uniprot
Match: A0A7S2WC40 (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WC40_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.220e-24
Identity = 103/167 (61.68%), Postives = 115/167 (68.86%), Query Frame = 0
Query:   65 THAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARDSLLDLRECDLRNADLSAFDLSGAIAADAXXXXXXXXXXXXSKSYAPRARXRGXXXXXXXXXXXXXXXXXXXXXLXXXXXXXXXXXXXXXXXXXDFTDVYIGDFAQRSLCKNATLRGVNPTTGASTRESLGC 231
            T A G   +LPP+D A   RC  T+SAIGQANAARDSLLDLR CD+       FDLSG IA++A            SKS+   +    XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX DF++ Y+GDF  R LCKN TL+G NP TG  TR S GC
Sbjct:   34 TSATGITYKLPPVDSAKKDRCMFTTSAIGQANAARDSLLDLRFCDMNGKSAEGFDLSGLIASEAQFENVNFKDAQLSKSFLRDSSFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDFSESYLGDFDLRKLCKNPTLKGENPKTGNPTRTSAGC 200          
The following BLAST results are available for this feature:
BLAST of Ggra1336.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YXE56.830e-3562.50Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
A0A7S1TN313.910e-3451.12Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
A0A7S4IZ256.890e-3161.64Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A2V3J1W07.200e-3165.63Thylakoid lumenal 17.4 kDa protein, chloroplastic ... [more]
R7QT191.490e-2659.24Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2H4B85.050e-2660.38Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1X6PH545.460e-2665.00Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S3B0S24.350e-2561.99Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S0LGG34.950e-2563.52Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2WC401.220e-2461.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.160.20.80coord: 101..232
e-value: 3.5E-27
score: 96.2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..43
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 39..43
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 44..232
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..38
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availableSUPERFAMILY141571Pentapeptide repeat-likecoord: 104..202
IPR001646Pentapeptide repeatPFAMPF00805Pentapeptidecoord: 133..172
e-value: 6.2E-8
score: 32.1
IPR044195Pentapeptide repeat containing protein TL17-likePANTHERPTHR47485THYLAKOID LUMENAL 17.4 KDA PROTEIN, CHLOROPLASTICcoord: 15..215

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:223529..224227 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1336.t1Ggra1336.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 223529..224227 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1336.t1 ID=Ggra1336.t1|Name=Ggra1336.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSAFAPPLPRAPPRRRTAPRCSAHTRAAAAAAAAAAAVGVASAAPRALAA
LALSASLLTAQPVLTHAAGSPPRLPPIDRANAQRCQPTSSAIGQANAARD
SLLDLRECDLRNADLSAFDLSGAIAADADLSGARLVDAQLSKSYAPRARL
RGADFTNAVADRVTFDGADLTDALFVNAVLSDSTFDDATLENVDFTDVYI
GDFAQRSLCKNATLRGVNPTTGASTRESLGCR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
IPR044195TL17-like