Ggra1328.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1328.t1
Unique Name	Ggra1328.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	418

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:116773..118026 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	935839.JAGJ01000029_gene11
PFAMs	Alpha-amylase,Alpha-amylase_C,CBM_20,CBM_25
Max annot lvl	201174\|Actinobacteria
KEGG ko	ko:K01176
KEGG Reaction	R02108,R02112,R11262
KEGG Pathway	ko00500,ko01100,ko04973,map00500,map01100,map04973
Evalue	3.17e-05
EggNOG OGs	COG0366@1\|root,COG0366@2\|Bacteria,2GKK1@201174\|Actinobacteria,4F58W@85017\|Promicromonosporaceae
EC	3.2.1.1
Description	Aamy_C
COG category	G
CAZy	GH13
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1328	Ggra1328	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 116773..118026 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1328.t1.start1	Ggra1328.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 116773..116775 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1328.t1.CDS1	Ggra1328.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 116773..118026 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1328.t1.exon1	Ggra1328.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 116773..118026 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1328.t1.stop1	Ggra1328.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 118024..118026 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1328.t1	Ggra1328.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 116773..118026 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:116773..118026+
coding sequence from alignment at tig00000092_pilon:116773..118026+

mRNA sequence

>Ggra1328.t1 ID=Ggra1328.t1|Name=Ggra1328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=418bp
MPSLLLSAILHLGAGVLGKRLPPPSICADQLPARETDQTSSLPGSATRKA
SSESTSQGCAALPAAQVSNSSARAVPTSLDHQHCVHDATQHCSPHESRDS
AVHSAAQNDAFPTSGPANFTGSPLISRTIEQNNRKRYGRHEWDEDKLKIE
RMGSELFGSFCYSQTVVIGNIPTPVPRGKVFVVSPRANVPPRCFHVCCEP
HPEEWPVALALTGFDWRQSTVWLLRVQDASESDMLQQLKAIEMMSAPCSV
VILLSSSERVRDIVDGAGFCVDETYDERPLFLLRKKELQPRCFENHAPSI
TPQYSPPPEPDEEGLVVRFELCVNSLPEQVRHGMATGCTRIVGNCPELGV
WDVDSGVRLVIAEDVLLAEVLVGKGETEYKYVFVDATGNVLWEDGGNRRL
SYVDQTLLRLEEHWRGY*

spliced messenger RNA

>Ggra1328.t1 ID=Ggra1328.t1|Name=Ggra1328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000092_pilon:116773..118026+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAGCTTGTTATTGAGTGCCATTCTCCATCTCGGTGCCGGGGTACT
TGGCAAGCGGTTGCCCCCTCCTTCCATATGCGCCGACCAGCTCCCAGCTC
GCGAGACGGACCAGACCTCCTCTTTACCGGGCTCCGCGACGCGCAAGGCT
TCCTCAGAATCTACATCACAAGGATGTGCCGCTCTACCGGCCGCTCAAGT
TTCTAACTCAAGTGCAAGAGCGGTCCCGACTTCATTGGACCACCAACATT
GCGTGCATGATGCAACCCAACATTGCTCCCCGCACGAATCTCGCGATTCA
GCGGTCCACTCCGCCGCTCAGAACGATGCTTTCCCTACCTCTGGGCCTGC
GAACTTCACTGGATCCCCCTTGATATCTCGAACTATTGAGCAGAACAACC
GCAAACGCTACGGACGCCACGAGTGGGATGAGGATAAACTTAAGATAGAA
AGGATGGGTTCAGAACTGTTTGGCAGTTTCTGTTACAGCCAAACTGTGGT
GATCGGCAATATTCCCACCCCCGTTCCAAGGGGGAAAGTCTTCGTCGTAT
CTCCGCGTGCCAATGTGCCGCCTCGCTGCTTCCATGTATGTTGCGAACCC
CATCCAGAAGAGTGGCCAGTAGCGTTGGCTCTGACAGGATTTGACTGGAG
ACAGAGCACGGTATGGCTGTTGCGAGTGCAGGATGCTTCAGAATCAGACA
TGTTGCAACAGCTCAAGGCGATCGAAATGATGAGCGCTCCATGTAGCGTA
GTTATTCTTTTGTCCTCCTCAGAGAGAGTGCGAGATATCGTGGACGGCGC
CGGATTCTGTGTGGATGAGACATACGATGAAAGGCCCCTGTTCTTGTTGC
GGAAAAAGGAACTTCAACCCCGATGCTTCGAAAACCATGCCCCAAGTATA
ACTCCGCAGTATAGTCCGCCGCCAGAGCCTGATGAGGAAGGATTAGTTGT
ACGCTTTGAGCTTTGTGTAAACAGCCTCCCGGAACAGGTTCGGCATGGGA
TGGCCACTGGTTGTACGAGAATTGTCGGTAATTGTCCAGAGTTAGGTGTG
TGGGATGTTGATTCTGGAGTGCGGTTGGTAATTGCAGAAGACGTTTTGTT
GGCTGAGGTCTTGGTGGGGAAGGGGGAAACTGAGTACAAATACGTGTTTG
TCGATGCAACGGGAAACGTTCTCTGGGAAGATGGCGGAAATAGGCGTTTG
TCATACGTGGATCAGACTTTGCTTCGCTTAGAGGAGCATTGGAGAGGTTA
TTGA

protein sequence of Ggra1328.t1

>Ggra1328.t1 ID=Ggra1328.t1|Name=Ggra1328.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=418bp
MPSLLLSAILHLGAGVLGKRLPPPSICADQLPARETDQTSSLPGSATRKA
SSESTSQGCAALPAAQVSNSSARAVPTSLDHQHCVHDATQHCSPHESRDS
AVHSAAQNDAFPTSGPANFTGSPLISRTIEQNNRKRYGRHEWDEDKLKIE
RMGSELFGSFCYSQTVVIGNIPTPVPRGKVFVVSPRANVPPRCFHVCCEP
HPEEWPVALALTGFDWRQSTVWLLRVQDASESDMLQQLKAIEMMSAPCSV
VILLSSSERVRDIVDGAGFCVDETYDERPLFLLRKKELQPRCFENHAPSI
TPQYSPPPEPDEEGLVVRFELCVNSLPEQVRHGMATGCTRIVGNCPELGV
WDVDSGVRLVIAEDVLLAEVLVGKGETEYKYVFVDATGNVLWEDGGNRRL
SYVDQTLLRLEEHWRGY*

mRNA from alignment at tig00000092_pilon:116773..118026+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1328.t1 ID=Ggra1328.t1|Name=Ggra1328.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1254bp|location=Sequence derived from alignment at tig00000092_pilon:116773..118026+ (Gracilaria gracilis GNS1m male)
ATGCCCAGCTTGTTATTGAGTGCCATTCTCCATCTCGGTGCCGGGGTACT
TGGCAAGCGGTTGCCCCCTCCTTCCATATGCGCCGACCAGCTCCCAGCTC
GCGAGACGGACCAGACCTCCTCTTTACCGGGCTCCGCGACGCGCAAGGCT
TCCTCAGAATCTACATCACAAGGATGTGCCGCTCTACCGGCCGCTCAAGT
TTCTAACTCAAGTGCAAGAGCGGTCCCGACTTCATTGGACCACCAACATT
GCGTGCATGATGCAACCCAACATTGCTCCCCGCACGAATCTCGCGATTCA
GCGGTCCACTCCGCCGCTCAGAACGATGCTTTCCCTACCTCTGGGCCTGC
GAACTTCACTGGATCCCCCTTGATATCTCGAACTATTGAGCAGAACAACC
GCAAACGCTACGGACGCCACGAGTGGGATGAGGATAAACTTAAGATAGAA
AGGATGGGTTCAGAACTGTTTGGCAGTTTCTGTTACAGCCAAACTGTGGT
GATCGGCAATATTCCCACCCCCGTTCCAAGGGGGAAAGTCTTCGTCGTAT
CTCCGCGTGCCAATGTGCCGCCTCGCTGCTTCCATGTATGTTGCGAACCC
CATCCAGAAGAGTGGCCAGTAGCGTTGGCTCTGACAGGATTTGACTGGAG
ACAGAGCACGGTATGGCTGTTGCGAGTGCAGGATGCTTCAGAATCAGACA
TGTTGCAACAGCTCAAGGCGATCGAAATGATGAGCGCTCCATGTAGCGTA
GTTATTCTTTTGTCCTCCTCAGAGAGAGTGCGAGATATCGTGGACGGCGC
CGGATTCTGTGTGGATGAGACATACGATGAAAGGCCCCTGTTCTTGTTGC
GGAAAAAGGAACTTCAACCCCGATGCTTCGAAAACCATGCCCCAAGTATA
ACTCCGCAGTATAGTCCGCCGCCAGAGCCTGATGAGGAAGGATTAGTTGT
ACGCTTTGAGCTTTGTGTAAACAGCCTCCCGGAACAGGTTCGGCATGGGA
TGGCCACTGGTTGTACGAGAATTGTCGGTAATTGTCCAGAGTTAGGTGTG
TGGGATGTTGATTCTGGAGTGCGGTTGGTAATTGCAGAAGACGTTTTGTT
GGCTGAGGTCTTGGTGGGGAAGGGGGAAACTGAGTACAAATACGTGTTTG
TCGATGCAACGGGAAACGTTCTCTGGGAAGATGGCGGAAATAGGCGTTTG
TCATACGTGGATCAGACTTTGCTTCGCTTAGAGGAGCATTGGAGAGGTTA
TTGA

Coding sequence (CDS) from alignment at tig00000092_pilon:116773..118026+

>Ggra1328.t1 ID=Ggra1328.t1|Name=Ggra1328.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1254bp|location=Sequence derived from alignment at tig00000092_pilon:116773..118026+ (Gracilaria gracilis GNS1m male)
ATGCCCAGCTTGTTATTGAGTGCCATTCTCCATCTCGGTGCCGGGGTACT
TGGCAAGCGGTTGCCCCCTCCTTCCATATGCGCCGACCAGCTCCCAGCTC
GCGAGACGGACCAGACCTCCTCTTTACCGGGCTCCGCGACGCGCAAGGCT
TCCTCAGAATCTACATCACAAGGATGTGCCGCTCTACCGGCCGCTCAAGT
TTCTAACTCAAGTGCAAGAGCGGTCCCGACTTCATTGGACCACCAACATT
GCGTGCATGATGCAACCCAACATTGCTCCCCGCACGAATCTCGCGATTCA
GCGGTCCACTCCGCCGCTCAGAACGATGCTTTCCCTACCTCTGGGCCTGC
GAACTTCACTGGATCCCCCTTGATATCTCGAACTATTGAGCAGAACAACC
GCAAACGCTACGGACGCCACGAGTGGGATGAGGATAAACTTAAGATAGAA
AGGATGGGTTCAGAACTGTTTGGCAGTTTCTGTTACAGCCAAACTGTGGT
GATCGGCAATATTCCCACCCCCGTTCCAAGGGGGAAAGTCTTCGTCGTAT
CTCCGCGTGCCAATGTGCCGCCTCGCTGCTTCCATGTATGTTGCGAACCC
CATCCAGAAGAGTGGCCAGTAGCGTTGGCTCTGACAGGATTTGACTGGAG
ACAGAGCACGGTATGGCTGTTGCGAGTGCAGGATGCTTCAGAATCAGACA
TGTTGCAACAGCTCAAGGCGATCGAAATGATGAGCGCTCCATGTAGCGTA
GTTATTCTTTTGTCCTCCTCAGAGAGAGTGCGAGATATCGTGGACGGCGC
CGGATTCTGTGTGGATGAGACATACGATGAAAGGCCCCTGTTCTTGTTGC
GGAAAAAGGAACTTCAACCCCGATGCTTCGAAAACCATGCCCCAAGTATA
ACTCCGCAGTATAGTCCGCCGCCAGAGCCTGATGAGGAAGGATTAGTTGT
ACGCTTTGAGCTTTGTGTAAACAGCCTCCCGGAACAGGTTCGGCATGGGA
TGGCCACTGGTTGTACGAGAATTGTCGGTAATTGTCCAGAGTTAGGTGTG
TGGGATGTTGATTCTGGAGTGCGGTTGGTAATTGCAGAAGACGTTTTGTT
GGCTGAGGTCTTGGTGGGGAAGGGGGAAACTGAGTACAAATACGTGTTTG
TCGATGCAACGGGAAACGTTCTCTGGGAAGATGGCGGAAATAGGCGTTTG
TCATACGTGGATCAGACTTTGCTTCGCTTAGAGGAGCATTGGAGAGGTTA
TTGA