Ggra1321.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1321.t1
Unique NameGgra1321.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:99896..100528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1321Ggra1321Gracilaria gracilis GNS1m malegenetig00000092_pilon 99896..100528 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1321.t1.start1Ggra1321.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 99896..99898 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1321.t1.CDS1Ggra1321.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 99896..100528 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1321.t1.exon1Ggra1321.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 99896..100528 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1321.t1.stop1Ggra1321.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 100526..100528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1321.t1Ggra1321.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 99896..100528 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1321.t1 ID=Ggra1321.t1|Name=Ggra1321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MDLAMMLSADKRDDTNPPPYVGPATATEPVPLPHKRARLDTNATTLPSQK
LQPPRDSAMPSASSPAPPAASPYSELQKAVHNALESRTPALTTADKVALA
LEVLRARQLELDLAQARSNIEALVSNSGAAPRTLRAVIPSTAVKGLPVGT
PVEIERARFLLTPTTNDPQALYLTLELQGFGGSQNDEAQHGVARTARDDA
QSQLLEKPVE*
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spliced messenger RNA

>Ggra1321.t1 ID=Ggra1321.t1|Name=Ggra1321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:99896..100528+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCTCGCAATGATGCTCAGCGCTGACAAGCGCGACGATACAAATCC
CCCGCCTTATGTCGGCCCTGCCACCGCAACCGAGCCCGTACCGCTTCCAC
ACAAGCGAGCAAGACTAGATACCAACGCAACGACCCTTCCTTCGCAAAAG
CTGCAGCCCCCTCGCGACTCCGCCATGCCTTCCGCTTCCTCTCCTGCCCC
ACCAGCCGCCTCTCCTTACTCTGAGCTACAGAAAGCCGTACACAATGCGC
TTGAGAGTCGTACACCGGCGTTGACTACCGCAGACAAGGTCGCCTTAGCG
CTGGAGGTGCTTCGCGCACGGCAATTAGAACTCGACCTGGCACAGGCTAG
AAGCAACATCGAGGCCCTTGTGAGCAATTCAGGTGCCGCTCCGCGCACAT
TGCGAGCGGTCATCCCGTCCACCGCTGTCAAGGGCCTGCCCGTGGGCACA
CCGGTCGAGATTGAAAGAGCAAGATTTTTGTTGACGCCAACTACTAATGA
TCCACAGGCGCTGTACCTTACTCTTGAGTTGCAAGGTTTTGGTGGCTCAC
AAAACGACGAAGCTCAACACGGAGTCGCACGGACCGCAAGAGATGACGCG
CAATCCCAATTACTCGAAAAGCCTGTTGAATAG
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protein sequence of Ggra1321.t1

>Ggra1321.t1 ID=Ggra1321.t1|Name=Ggra1321.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MDLAMMLSADKRDDTNPPPYVGPATATEPVPLPHKRARLDTNATTLPSQK
LQPPRDSAMPSASSPAPPAASPYSELQKAVHNALESRTPALTTADKVALA
LEVLRARQLELDLAQARSNIEALVSNSGAAPRTLRAVIPSTAVKGLPVGT
PVEIERARFLLTPTTNDPQALYLTLELQGFGGSQNDEAQHGVARTARDDA
QSQLLEKPVE*
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mRNA from alignment at tig00000092_pilon:99896..100528+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1321.t1 ID=Ggra1321.t1|Name=Ggra1321.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:99896..100528+ (Gracilaria gracilis GNS1m male)
ATGGACCTCGCAATGATGCTCAGCGCTGACAAGCGCGACGATACAAATCC
CCCGCCTTATGTCGGCCCTGCCACCGCAACCGAGCCCGTACCGCTTCCAC
ACAAGCGAGCAAGACTAGATACCAACGCAACGACCCTTCCTTCGCAAAAG
CTGCAGCCCCCTCGCGACTCCGCCATGCCTTCCGCTTCCTCTCCTGCCCC
ACCAGCCGCCTCTCCTTACTCTGAGCTACAGAAAGCCGTACACAATGCGC
TTGAGAGTCGTACACCGGCGTTGACTACCGCAGACAAGGTCGCCTTAGCG
CTGGAGGTGCTTCGCGCACGGCAATTAGAACTCGACCTGGCACAGGCTAG
AAGCAACATCGAGGCCCTTGTGAGCAATTCAGGTGCCGCTCCGCGCACAT
TGCGAGCGGTCATCCCGTCCACCGCTGTCAAGGGCCTGCCCGTGGGCACA
CCGGTCGAGATTGAAAGAGCAAGATTTTTGTTGACGCCAACTACTAATGA
TCCACAGGCGCTGTACCTTACTCTTGAGTTGCAAGGTTTTGGTGGCTCAC
AAAACGACGAAGCTCAACACGGAGTCGCACGGACCGCAAGAGATGACGCG
CAATCCCAATTACTCGAAAAGCCTGTTGAATAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:99896..100528+

>Ggra1321.t1 ID=Ggra1321.t1|Name=Ggra1321.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:99896..100528+ (Gracilaria gracilis GNS1m male)
ATGGACCTCGCAATGATGCTCAGCGCTGACAAGCGCGACGATACAAATCC
CCCGCCTTATGTCGGCCCTGCCACCGCAACCGAGCCCGTACCGCTTCCAC
ACAAGCGAGCAAGACTAGATACCAACGCAACGACCCTTCCTTCGCAAAAG
CTGCAGCCCCCTCGCGACTCCGCCATGCCTTCCGCTTCCTCTCCTGCCCC
ACCAGCCGCCTCTCCTTACTCTGAGCTACAGAAAGCCGTACACAATGCGC
TTGAGAGTCGTACACCGGCGTTGACTACCGCAGACAAGGTCGCCTTAGCG
CTGGAGGTGCTTCGCGCACGGCAATTAGAACTCGACCTGGCACAGGCTAG
AAGCAACATCGAGGCCCTTGTGAGCAATTCAGGTGCCGCTCCGCGCACAT
TGCGAGCGGTCATCCCGTCCACCGCTGTCAAGGGCCTGCCCGTGGGCACA
CCGGTCGAGATTGAAAGAGCAAGATTTTTGTTGACGCCAACTACTAATGA
TCCACAGGCGCTGTACCTTACTCTTGAGTTGCAAGGTTTTGGTGGCTCAC
AAAACGACGAAGCTCAACACGGAGTCGCACGGACCGCAAGAGATGACGCG
CAATCCCAATTACTCGAAAAGCCTGTTGAATAG
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