Ggra1320.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1320.t1
Unique Name	Ggra1320.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	227

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:98738..99418 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7918.ENSLOCP00000005349
Preferred name	MRTO4
PFAMs	Ribosomal_L10
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K14815
GOs	GO:0000027,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Evalue	1.42e-67
EggNOG OGs	COG0244@1\|root,KOG0816@2759\|Eukaryota,394J2@33154\|Opisthokonta,3BHV3@33208\|Metazoa,3CTPH@33213\|Bilateria,48068@7711\|Chordata,491RR@7742\|Vertebrata,49UCX@7898\|Actinopterygii
Description	Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
COG category	A
BRITE	ko00000,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1320	Ggra1320	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 98738..99418 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1320.t1.start1	Ggra1320.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 98738..98740 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1320.t1.CDS1	Ggra1320.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 98738..99418 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1320.t1.exon1	Ggra1320.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 98738..99418 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1320.t1.stop1	Ggra1320.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 99416..99418 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1320.t1	Ggra1320.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 98738..99418 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:98738..99418+
coding sequence from alignment at tig00000092_pilon:98738..99418+

mRNA sequence

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNM
RNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVG
NVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPN
QEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMA
KFRLRLLCHYRKSDGSFEQLEQMRAQ*

spliced messenger RNA

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000092_pilon:98738..99418+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACGGTCGAAGAGAGAGAGAATTGTGGCATTGACTAAGACGCGCAA
GCATGTCATCGGCAAGAAGAAGAAGCAGGACTTGTTGGAAGCTATCCGTA
ACGATATCGATCAGTTCGAACACATCTACGTTTTCTCGACTGACAACATG
CGCAACGCGAAGCTCAAGCAGTTGCGCAGTTCGTGGAACGACTCCACCTT
CTTCTTTGGACGGAAAAAAATCGCGCAAATAGCGTTGGGGCGATCGCCGG
AGGAGGAGTACGCCGATGGTCTGCGACAGGTATCAAAACAGTTGGTAGGC
AACGTTGGACTTCTGTTTACAAACCGTGACCATGCGCAAGTGCTCAAATT
CTTCGGCTCGTACAGCGAAGATGAATTCGCGAGGAGCGGCTTCGTGGCGA
CGGAACAGGTGCAGCTGAAGGAGGGTGCGCTGGAAGGTTTTGCGCCAAAC
CAGGAGCAAAATCTCAGGCAGGTTGAATTACCAGTTGGCCTGAAAAAGGG
CGTCATCACGCTTCTACAGGATTTCACCGTGTGCAACAAAGGCGACGTAC
TCACCCCAGAACGGGCCAAGGTGCTGGAATTCCTGGGCATCCGTATGGCG
AAATTCCGCCTGCGGTTGTTGTGCCACTACCGGAAATCAGACGGATCGTT
CGAGCAGCTAGAGCAGATGAGGGCGCAGTAA

protein sequence of Ggra1320.t1

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNM
RNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVG
NVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPN
QEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMA
KFRLRLLCHYRKSDGSFEQLEQMRAQ*

mRNA from alignment at tig00000092_pilon:98738..99418+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000092_pilon:98738..99418+ (Gracilaria gracilis GNS1m male)
ATGGGACGGTCGAAGAGAGAGAGAATTGTGGCATTGACTAAGACGCGCAA
GCATGTCATCGGCAAGAAGAAGAAGCAGGACTTGTTGGAAGCTATCCGTA
ACGATATCGATCAGTTCGAACACATCTACGTTTTCTCGACTGACAACATG
CGCAACGCGAAGCTCAAGCAGTTGCGCAGTTCGTGGAACGACTCCACCTT
CTTCTTTGGACGGAAAAAAATCGCGCAAATAGCGTTGGGGCGATCGCCGG
AGGAGGAGTACGCCGATGGTCTGCGACAGGTATCAAAACAGTTGGTAGGC
AACGTTGGACTTCTGTTTACAAACCGTGACCATGCGCAAGTGCTCAAATT
CTTCGGCTCGTACAGCGAAGATGAATTCGCGAGGAGCGGCTTCGTGGCGA
CGGAACAGGTGCAGCTGAAGGAGGGTGCGCTGGAAGGTTTTGCGCCAAAC
CAGGAGCAAAATCTCAGGCAGGTTGAATTACCAGTTGGCCTGAAAAAGGG
CGTCATCACGCTTCTACAGGATTTCACCGTGTGCAACAAAGGCGACGTAC
TCACCCCAGAACGGGCCAAGGTGCTGGAATTCCTGGGCATCCGTATGGCG
AAATTCCGCCTGCGGTTGTTGTGCCACTACCGGAAATCAGACGGATCGTT
CGAGCAGCTAGAGCAGATGAGGGCGCAGTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:98738..99418+

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000092_pilon:98738..99418+ (Gracilaria gracilis GNS1m male)
ATGGGACGGTCGAAGAGAGAGAGAATTGTGGCATTGACTAAGACGCGCAA
GCATGTCATCGGCAAGAAGAAGAAGCAGGACTTGTTGGAAGCTATCCGTA
ACGATATCGATCAGTTCGAACACATCTACGTTTTCTCGACTGACAACATG
CGCAACGCGAAGCTCAAGCAGTTGCGCAGTTCGTGGAACGACTCCACCTT
CTTCTTTGGACGGAAAAAAATCGCGCAAATAGCGTTGGGGCGATCGCCGG
AGGAGGAGTACGCCGATGGTCTGCGACAGGTATCAAAACAGTTGGTAGGC
AACGTTGGACTTCTGTTTACAAACCGTGACCATGCGCAAGTGCTCAAATT
CTTCGGCTCGTACAGCGAAGATGAATTCGCGAGGAGCGGCTTCGTGGCGA
CGGAACAGGTGCAGCTGAAGGAGGGTGCGCTGGAAGGTTTTGCGCCAAAC
CAGGAGCAAAATCTCAGGCAGGTTGAATTACCAGTTGGCCTGAAAAAGGG
CGTCATCACGCTTCTACAGGATTTCACCGTGTGCAACAAAGGCGACGTAC
TCACCCCAGAACGGGCCAAGGTGCTGGAATTCCTGGGCATCCGTATGGCG
AAATTCCGCCTGCGGTTGTTGTGCCACTACCGGAAATCAGACGGATCGTT
CGAGCAGCTAGAGCAGATGAGGGCGCAGTAA