Ggra1320.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1320.t1
Unique NameGgra1320.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Homology
BLAST of Ggra1320.t1 vs. uniprot
Match: A0A2V3J232 (Ribosome assembly factor mrt4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J232_9FLOR)

HSP 1 Score: 376 bits (966), Expect = 7.380e-131
Identity = 185/220 (84.09%), Postives = 203/220 (92.27%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQL 220
            MGRSKRERIV LTKTRKHVIGKK+KQDLLEAIRNDIDQ+EHIYVFST+NMRNAKLKQLR++WNDS FFFGRKKIAQ+ALGRSPEEEY++GL ++SK+LVGNVGLLFTNR H  V+ FF  Y EDEFARSGFVATE V L +G LEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVC+KGDVLTPERAK LEFL +RMAKFR++LLCHYRKSD SFE+L
Sbjct:    1 MGRSKRERIVTLTKTRKHVIGKKRKQDLLEAIRNDIDQYEHIYVFSTENMRNAKLKQLRATWNDSRFFFGRKKIAQVALGRSPEEEYSEGLGKLSKRLVGNVGLLFTNRAHKDVISFFREYCEDEFARSGFVATEDVHLTKGPLEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCSKGDVLTPERAKALEFLHVRMAKFRVKLLCHYRKSDASFEEL 220          
BLAST of Ggra1320.t1 vs. uniprot
Match: A0A7S1ETJ0 (Ribosome assembly factor mrt4 n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETJ0_9RHOD)

HSP 1 Score: 234 bits (597), Expect = 1.100e-74
Identity = 120/220 (54.55%), Postives = 157/220 (71.36%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQL 220
            M RSKR+RIV+L+KT KHVIG++ K  L+E IR  +D+++ IYVFS  +MRNAKLK+LR  W DS FF GR K+ Q+ALG+    E+A+ L  V+K+L G+VGLLFTNR+H QV +FF SYS  +FARSG  A E V L  GAL  F  +Q   L+ + +PV L KGVI L+ DFTVC   ++LTPE+AK+LE LG + A+F+L LL H+ K+ G FE L
Sbjct:    1 MPRSKRQRIVSLSKTGKHVIGREGKHGLIEEIRECVDKYDSIYVFSYQDMRNAKLKELRVEWRDSRFFLGRNKLLQVALGKDAATEHAENLNLVAKRLSGDVGLLFTNREHTQVKEFFESYSASDFARSGARAIETVTLNAGALTQFVASQNDQLQALGMPVQLSKGVIELMGDFTVCEMNEILTPEKAKILELLGYKHAQFKLNLLAHWSKNKG-FETL 219          
BLAST of Ggra1320.t1 vs. uniprot
Match: Q4KTI9 (Ribosome assembly factor mrt4 n=1 Tax=Suberites domuncula TaxID=55567 RepID=Q4KTI9_SUBDO)

HSP 1 Score: 224 bits (571), Expect = 1.070e-70
Identity = 109/220 (49.55%), Postives = 159/220 (72.27%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQL 220
            M +SKR R++ L+KTR    G + K  LL+ IR+ +D++ +++V+S DNMRNAKLK LR+ W DS FFFG+ ++ Q+ALGRS  +EY  GL  VS+QL G VGL FTN    +V K+F ++SE+++ARSGF++TE++   EG L  F  N E  LR++ LP  LKKG +TL +D+TVC +GDVL+PE+A++L+ L I+MA F++ L+C +  +DGSF Q+
Sbjct:    1 MPKSKRNRVLTLSKTRSK--GHELKSGLLQEIRDSVDKYANLFVYSIDNMRNAKLKDLRTEWKDSRFFFGKNRVMQLALGRSESDEYKTGLHYVSEQLNGAVGLFFTNEPTEKVEKWFDNFSENDYARSGFISTEEIVCSEGPLTQFTHNMEPQLRKLGLPTALKKGEVTLREDYTVCTEGDVLSPEQARILKLLDIKMASFKVNLICVW-SNDGSFVQM 217          
BLAST of Ggra1320.t1 vs. uniprot
Match: mRNA turnover protein 4 homolog isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2C76E (mRNA turnover protein 4 homolog isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2C76E)

HSP 1 Score: 223 bits (568), Expect = 3.800e-70
Identity = 110/220 (50.00%), Postives = 155/220 (70.45%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQL 220
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D +++++VFS +NMRN KLK +RS+W  S FFFG+ K+  +ALG+ P +EY DGL +VSKQL G VGLLFTNR   +V+++F  Y+E +FAR+G VAT  V L  G L  F  + E  LRQ+ LP  LKKGV+TLL D+ VC +G  LTPE+A++L+ LG+ MA F++ + C +   +G FEQL
Sbjct:    1 MPRSRRDKRVSLTKTTKK--GLQVKQNLIEELRKCVDTYKNLFVFSVENMRNNKLKDMRSAWKHSRFFFGKNKVMMVALGKEPADEYKDGLHKVSKQLQGEVGLLFTNRTKVEVIEWFEQYTESDFARAGNVATMAVTLDAGPLPQFTHSLEPQLRQLGLPTSLKKGVVTLLSDYDVCKEGASLTPEQARLLKLLGVEMATFKVTINCMWNSENGEFEQL 218          
BLAST of Ggra1320.t1 vs. uniprot
Match: A0A8I6RK59 (Uncharacterized protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6RK59_CIMLE)

HSP 1 Score: 221 bits (564), Expect = 1.590e-69
Identity = 113/218 (51.83%), Postives = 152/218 (69.72%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFE 218
            M +SKR++ V+LTKT K   G + K  L+E IR  ++Q+++I+VFS +NMRN KLK LR  WNDS FFFG+ K+  + LGR  E+E  D L ++S +L G  GLLFTNR +  V KFF +Y E ++ARSGFVATE V + EG L  F  + E  LRQ+ LP  LKKGV+TLL D  VCN+GDVLTPE+A++L+ L  RMA+F++ L+C + K  G F+
Sbjct:    1 MPKSKRDKKVSLTKTTKK--GLQAKHSLVEQIRKSVEQYKNIFVFSVENMRNGKLKNLRGDWNDSRFFFGKNKVMTLGLGRKKEDEVEDNLHKLSAKLKGQCGLLFTNRSNDDVTKFFDTYLEKDYARSGFVATETVVVPEGPLPEFPHSMEPQLRQLGLPTSLKKGVVTLLTDHKVCNEGDVLTPEQARILKLLDNRMAQFKISLICMWSKG-GMFK 215          
BLAST of Ggra1320.t1 vs. uniprot
Match: A0A401PAH6 (Ribosome assembly factor mrt4 n=5 Tax=Galeoidea TaxID=119195 RepID=A0A401PAH6_SCYTO)

HSP 1 Score: 221 bits (563), Expect = 2.320e-69
Identity = 110/220 (50.00%), Postives = 153/220 (69.55%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQL 220
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D +++++VFS +NMRN KLK +RS+W  S FFFG+ K+  +ALGR P +EY DGL +VSKQL G VGLLFTNR   +V+++F  Y+E  FAR+G +AT  V L  G L  F  + E  LRQ+ LP  LKKGV+TLL D+ VC +G  LTPE+A++L+ LG+ MA F++ + C +    G FEQL
Sbjct:    1 MPRSRRDKRVSLTKTTKK--GLQIKQNLIEELRKCVDTYKNVFVFSIENMRNNKLKDMRSAWKHSRFFFGKNKVMMVALGREPADEYKDGLHKVSKQLQGEVGLLFTNRTKTEVIEWFDRYTESNFARAGNIATMAVTLDAGPLPQFTHSLEPQLRQLGLPTTLKKGVVTLLSDYDVCKEGASLTPEQARLLKLLGVEMADFKVTINCMWNSETGEFEQL 218          
BLAST of Ggra1320.t1 vs. uniprot
Match: R7QI94 (Ribosome assembly factor mrt4 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QI94_CHOCR)

HSP 1 Score: 219 bits (557), Expect = 2.690e-69
Identity = 104/172 (60.47%), Postives = 131/172 (76.16%), Query Frame = 0
Query:   50 MRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQLE 221
            MRN  LK+LR+ W DS FF GR KI Q+ALGR   EEYADGLRQV+ QL GNVGLLFTNR H +V+ FF  +  D++ARSGF ATE+V+L +G LE F  +QE +LR + +P+ LKKG + L +DFTVC  G+ LTPE+AK+LEFLG+RMAKFR+ L C+YRK DG F+ L+
Sbjct:    1 MRNTILKKLRTEWRDSRFFMGRNKIMQVALGRDEAEEYADGLRQVATQLTGNVGLLFTNRKHKEVVSFFRKFEADDYARSGFEATEKVELAKGELEMFETSQEHSLRLLGMPIVLKKGKVCLSRDFTVCEGGETLTPEKAKILEFLGVRMAKFRVVLRCYYRKKDGHFKLLD 172          
BLAST of Ggra1320.t1 vs. uniprot
Match: mRNA turnover protein 4 homolog n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D0CC83 (mRNA turnover protein 4 homolog n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D0CC83)

HSP 1 Score: 219 bits (558), Expect = 1.940e-68
Identity = 111/215 (51.63%), Postives = 153/215 (71.16%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDG 215
            M +SKR++ V+LTKT K   G   KQ  +E IRN I ++EHI++F+ +NMRNAKLK LR+ W+DS FFFG+ K+  +ALG+S  +E  D L  +SK+L G  GLL TN+D   VL++F SYSE EFAR+GFVAT+ V L  G L GF+   E +LR++ LP  L+KGVITL++++ VC KG  LTPE+A +L+ LG +MAKF++ + CH+ K  G
Sbjct:    1 MPKSKRDKKVSLTKTTKK--GLLLKQKTIEEIRNSISKYEHIFLFTVNNMRNAKLKDLRNDWSDSRFFFGKNKVMALALGKSKSDELEDQLNLLSKKLKGQCGLLMTNKDVFDVLEYFKSYSEKEFARAGFVATKDVLLPVGPLTGFSHAIEPHLRRLGLPTSLEKGVITLIKEYQVCKKGSPLTPEQASILKLLGKQMAKFKIVIKCHWSKGKG 213          
BLAST of Ggra1320.t1 vs. uniprot
Match: W5MAE0 (Ribosome assembly factor mrt4 n=4 Tax=Lepisosteidae TaxID=7915 RepID=W5MAE0_LEPOC)

HSP 1 Score: 219 bits (557), Expect = 2.500e-68
Identity = 106/218 (48.62%), Postives = 152/218 (69.72%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFE 218
            M +SKR++ ++LTKT K   G + KQ+L+E +R  +D + H+++FS  NMRN+KLK +R++W  S FFFG+ K+  IALG+ P +EY D L +VSK L G VGLLFTN+   +V ++F  + E +FAR+G  AT  V L EG L+ F+ + E  LRQ+ LP  LKKGV+TLL+D+ VC +GD LTPE+A VL+ LGI++A+FR+ + C +    G FE
Sbjct:    3 MPKSKRDKKISLTKTTKK--GLESKQNLIEELRKCVDMYSHLFIFSVANMRNSKLKDIRTAWKHSRFFFGKNKVMMIALGKGPADEYKDNLHKVSKFLRGEVGLLFTNKTKEEVQEYFSHFKEIDFARAGNKATMAVTLDEGPLDQFSHSMEPQLRQLGLPTALKKGVVTLLKDYDVCKEGDTLTPEQATVLKLLGIKLAEFRVTIKCMWNSETGDFE 218          
BLAST of Ggra1320.t1 vs. uniprot
Match: K4GJE7 (Ribosome assembly factor mrt4 n=3 Tax=Callorhinchus milii TaxID=7868 RepID=K4GJE7_CALMI)

HSP 1 Score: 218 bits (555), Expect = 3.660e-68
Identity = 106/223 (47.53%), Postives = 155/223 (69.51%), Query Frame = 0
Query:    1 MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNMRNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVGNVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPNQEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMAKFRLRLLCHYRKSDGSFEQLEQM 223
            M RS+R++ V+LTKT K   G + KQ+L+E +R  +D ++H+++FS  NMRN KLK +R++W  S FFFG+ K+  +ALG+ P +EY +GL +VSK+L G VGLLFT+R   +V+++F  +SE++FARSG  AT  V L  G L  F  + E  LRQ+ LP  LKKGV+ LL D+ VC  GD+LTPE+A++L+ LG+ MA+F++ + C +    G FE+L  M
Sbjct:    1 MPRSRRDKKVSLTKTAKK--GLEVKQNLIEELRKCVDTYKHLFIFSIKNMRNNKLKDIRNAWKHSRFFFGKNKVMALALGKGPADEYKEGLHKVSKELSGEVGLLFTSRTKEEVIEWFDQFSENDFARSGNQATMAVTLDAGPLSQFTHSMEPQLRQLGLPTSLKKGVVVLLSDYDVCKAGDILTPEQARLLKLLGLEMAEFKVTISCMWNSETGVFEKLAAM 221          
The following BLAST results are available for this feature:
BLAST of Ggra1320.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2327.380e-13184.09Ribosome assembly factor mrt4 n=1 Tax=Gracilariops... [more]
A0A7S1ETJ01.100e-7454.55Ribosome assembly factor mrt4 n=1 Tax=Timspurckia ... [more]
Q4KTI91.070e-7049.55Ribosome assembly factor mrt4 n=1 Tax=Suberites do... [more]
mRNA turnover protein 4 homolog isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A2C76E3.800e-7050.00mRNA turnover protein 4 homolog isoform X1 n=2 Tax... [more]
A0A8I6RK591.590e-6951.83Uncharacterized protein n=1 Tax=Cimex lectularius ... [more]
A0A401PAH62.320e-6950.00Ribosome assembly factor mrt4 n=5 Tax=Galeoidea Ta... [more]
R7QI942.690e-6960.47Ribosome assembly factor mrt4 n=1 Tax=Chondrus cri... [more]
mRNA turnover protein 4 homolog n=1 Tax=Plutella xylostella TaxID=51655 RepID=UPI0005D0CC831.940e-6851.63mRNA turnover protein 4 homolog n=1 Tax=Plutella x... [more]
W5MAE02.500e-6848.62Ribosome assembly factor mrt4 n=4 Tax=Lepisosteida... [more]
K4GJE73.660e-6847.53Ribosome assembly factor mrt4 n=3 Tax=Callorhinchu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR04316450S ribosomal protein L10, insertion domain superfamilyGENE3D3.90.105.20coord: 126..199
e-value: 3.3E-69
score: 234.2
IPR043141Ribosomal protein L10-like domain superfamilyGENE3D3.30.70.1730coord: 32..215
e-value: 3.3E-69
score: 234.2
IPR043141Ribosomal protein L10-like domain superfamilySUPERFAMILY160369Ribosomal protein L10-likecoord: 22..145
IPR04063760S ribosomal protein L10P, insertion domainPFAMPF17777RL10P_insertcoord: 127..197
e-value: 2.9E-18
score: 65.7
IPR001790Ribosomal protein L10PPFAMPF00466Ribosomal_L10coord: 22..121
e-value: 6.2E-19
score: 68.0
NoneNo IPR availablePANTHERPTHR45841:SF1MRNA TURNOVER PROTEIN 4 HOMOLOGcoord: 1..223
NoneNo IPR availablePANTHERPTHR45841MRNA TURNOVER PROTEIN 4 MRTO4coord: 1..223
IPR033867Ribosome assembly factor Mrt4CDDcd05796Ribosomal_P0_likecoord: 23..185
e-value: 7.24464E-78
score: 229.387

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:98738..99418 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1320.t1Ggra1320.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 98738..99418 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1320.t1 ID=Ggra1320.t1|Name=Ggra1320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MGRSKRERIVALTKTRKHVIGKKKKQDLLEAIRNDIDQFEHIYVFSTDNM
RNAKLKQLRSSWNDSTFFFGRKKIAQIALGRSPEEEYADGLRQVSKQLVG
NVGLLFTNRDHAQVLKFFGSYSEDEFARSGFVATEQVQLKEGALEGFAPN
QEQNLRQVELPVGLKKGVITLLQDFTVCNKGDVLTPERAKVLEFLGIRMA
KFRLRLLCHYRKSDGSFEQLEQMRAQ*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043164RL10_insert_sf
IPR043141Ribosomal_L10-like_sf
IPR040637RL10P_insert
IPR001790Ribosomal_L10P
IPR033867Mrt4