Ggra1312.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1312.t1
Unique NameGgra1312.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:73691..74323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225400.XP_006764820.1
Preferred nameCCDC25
PFAMsDUF814
Max annot lvl33208|Metazoa
Evalue6.92e-70
EggNOG OGsKOG3272@1|root,KOG3272@2759|Eukaryota,38EJ9@33154|Opisthokonta,3B9CI@33208|Metazoa,3CUWV@33213|Bilateria,486GU@7711|Chordata,48ZY1@7742|Vertebrata,3J7DW@40674|Mammalia,4KVMY@9397|Chiroptera
DescriptionCoiled-coil domain-containing protein 25
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1312Ggra1312Gracilaria gracilis GNS1m malegenetig00000092_pilon 73691..74323 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1312.t1.start1Ggra1312.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 73691..73693 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1312.t1.CDS1Ggra1312.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 73691..74323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1312.t1.exon1Ggra1312.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 73691..74323 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1312.t1.stop1Ggra1312.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 74321..74323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1312.t1Ggra1312.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 73691..74323 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1312.t1 ID=Ggra1312.t1|Name=Ggra1312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MVFFYRTRDSSYHVYVGKDKYENEELIKYGWDNDVWFHVDKLSSAHVYLR
LKDGETIDSIPEGVLEDCVQLVKHNSIEGNKMNNIAVVYTYWSNLKKTGD
MDVGQVSFHRVGDVKRITVEKRANEIVNRLNRTKTEAHPDLAKEKTNRIK
HLNKIARDEMRKKAEREKEHREQRQKEKEAKSYDRIHQPKDMTSNKDIRQ
TYTEYEDDFM*
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spliced messenger RNA

>Ggra1312.t1 ID=Ggra1312.t1|Name=Ggra1312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:73691..74323+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTATTCTTCTACAGAACAAGAGACTCATCGTATCACGTTTACGTCGG
AAAGGACAAGTACGAAAATGAGGAGCTCATCAAGTATGGCTGGGATAACG
ATGTATGGTTTCATGTCGACAAACTTTCGTCTGCTCACGTGTATTTGCGC
CTCAAAGATGGTGAAACGATAGATTCTATCCCTGAAGGAGTACTGGAGGA
CTGCGTACAGCTCGTCAAACACAACTCCATCGAAGGCAATAAGATGAACA
ACATCGCAGTAGTGTACACCTATTGGAGCAACTTGAAAAAGACAGGTGAT
ATGGATGTTGGTCAAGTCAGCTTCCACAGGGTTGGAGATGTGAAACGAAT
AACCGTCGAGAAGCGCGCAAACGAAATCGTGAACCGCCTTAACCGAACAA
AAACTGAAGCACATCCGGACTTGGCTAAGGAAAAGACAAACCGTATCAAA
CATCTCAACAAGATTGCTCGGGACGAAATGCGAAAGAAAGCAGAGCGAGA
AAAGGAACACCGCGAACAGCGACAGAAAGAAAAGGAGGCAAAGTCTTACG
ATCGCATCCATCAACCAAAAGATATGACAAGCAACAAAGATATTCGTCAA
ACTTATACAGAATACGAAGATGATTTCATGTGA
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protein sequence of Ggra1312.t1

>Ggra1312.t1 ID=Ggra1312.t1|Name=Ggra1312.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MVFFYRTRDSSYHVYVGKDKYENEELIKYGWDNDVWFHVDKLSSAHVYLR
LKDGETIDSIPEGVLEDCVQLVKHNSIEGNKMNNIAVVYTYWSNLKKTGD
MDVGQVSFHRVGDVKRITVEKRANEIVNRLNRTKTEAHPDLAKEKTNRIK
HLNKIARDEMRKKAEREKEHREQRQKEKEAKSYDRIHQPKDMTSNKDIRQ
TYTEYEDDFM*
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mRNA from alignment at tig00000092_pilon:73691..74323+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1312.t1 ID=Ggra1312.t1|Name=Ggra1312.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:73691..74323+ (Gracilaria gracilis GNS1m male)
ATGGTATTCTTCTACAGAACAAGAGACTCATCGTATCACGTTTACGTCGG
AAAGGACAAGTACGAAAATGAGGAGCTCATCAAGTATGGCTGGGATAACG
ATGTATGGTTTCATGTCGACAAACTTTCGTCTGCTCACGTGTATTTGCGC
CTCAAAGATGGTGAAACGATAGATTCTATCCCTGAAGGAGTACTGGAGGA
CTGCGTACAGCTCGTCAAACACAACTCCATCGAAGGCAATAAGATGAACA
ACATCGCAGTAGTGTACACCTATTGGAGCAACTTGAAAAAGACAGGTGAT
ATGGATGTTGGTCAAGTCAGCTTCCACAGGGTTGGAGATGTGAAACGAAT
AACCGTCGAGAAGCGCGCAAACGAAATCGTGAACCGCCTTAACCGAACAA
AAACTGAAGCACATCCGGACTTGGCTAAGGAAAAGACAAACCGTATCAAA
CATCTCAACAAGATTGCTCGGGACGAAATGCGAAAGAAAGCAGAGCGAGA
AAAGGAACACCGCGAACAGCGACAGAAAGAAAAGGAGGCAAAGTCTTACG
ATCGCATCCATCAACCAAAAGATATGACAAGCAACAAAGATATTCGTCAA
ACTTATACAGAATACGAAGATGATTTCATGTGA
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Coding sequence (CDS) from alignment at tig00000092_pilon:73691..74323+

>Ggra1312.t1 ID=Ggra1312.t1|Name=Ggra1312.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000092_pilon:73691..74323+ (Gracilaria gracilis GNS1m male)
ATGGTATTCTTCTACAGAACAAGAGACTCATCGTATCACGTTTACGTCGG
AAAGGACAAGTACGAAAATGAGGAGCTCATCAAGTATGGCTGGGATAACG
ATGTATGGTTTCATGTCGACAAACTTTCGTCTGCTCACGTGTATTTGCGC
CTCAAAGATGGTGAAACGATAGATTCTATCCCTGAAGGAGTACTGGAGGA
CTGCGTACAGCTCGTCAAACACAACTCCATCGAAGGCAATAAGATGAACA
ACATCGCAGTAGTGTACACCTATTGGAGCAACTTGAAAAAGACAGGTGAT
ATGGATGTTGGTCAAGTCAGCTTCCACAGGGTTGGAGATGTGAAACGAAT
AACCGTCGAGAAGCGCGCAAACGAAATCGTGAACCGCCTTAACCGAACAA
AAACTGAAGCACATCCGGACTTGGCTAAGGAAAAGACAAACCGTATCAAA
CATCTCAACAAGATTGCTCGGGACGAAATGCGAAAGAAAGCAGAGCGAGA
AAAGGAACACCGCGAACAGCGACAGAAAGAAAAGGAGGCAAAGTCTTACG
ATCGCATCCATCAACCAAAAGATATGACAAGCAACAAAGATATTCGTCAA
ACTTATACAGAATACGAAGATGATTTCATGTGA
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