Ggra1310.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1310.t1
Unique Name	Ggra1310.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	796

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:68862..71249 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1310	Ggra1310	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 68862..71249 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1310.t1.start1	Ggra1310.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 68862..68864 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1310.t1.CDS1	Ggra1310.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 68862..71249 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1310.t1.exon1	Ggra1310.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 68862..71249 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1310.t1.stop1	Ggra1310.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 71247..71249 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1310.t1	Ggra1310.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 68862..71249 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:68862..71249+
coding sequence from alignment at tig00000092_pilon:68862..71249+

mRNA sequence

>Ggra1310.t1 ID=Ggra1310.t1|Name=Ggra1310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=796bp
MSLGTHVTLAVLAFCVIVGEPSHAGEHTPTHTVGLQNAEQTSQAVSPSLI
VPFLVGLVVPCVLKLLLDYLAQFSEVRPVNTALLYAQIAVYIVAHYISLF
IGVGTLLFAAVERPQNFADLACGAIGCLASMYSFDFTLTAASKFRKIWCC
KQFVSLPPRTRRLLPNTLKKLIHIASGSDSCTELPFSQFLQLVVFSLQLA
DEQLLHNILDASCSGPTARRLAHLVKRLPSFRRALQTKNRFVFDAFALPA
REATRPDSPNSVSFSERVDLATYFLKLQDKELLDTLFHPSIGSTSTCAAK
LRQLYDRVVDPNNFSDVGRGYLLPDTLNKLIHVANRSDSCTELPFSQFLQ
LVEFSLQLADEQILHNILDASCSGPTARRLAHLVKRLPSFRRALQTKNRF
VFDAFALPAREATRPDSPNSVSFSERVDLATYFLKLQDKELLDTLFHPSI
GSTSTCAAKLRQLYDRVVDPNGFSDVGRGYLLPDTLNKLIHVANRSDSCT
ELPFSQFLQLVEFCLQLADEQILHNILDASCSGPTARRLAHLAKRLPSFR
RALQTKNRFVFDAFALPAREATRPDSPNSVSFSERVDLATYFLKLQDTEL
LDTLFHPSIGSTSTCAAKLRQLYDRVVDPNNFSDKGRGYLPVALKDLLLS
MSAENHSTTLAFAVQVELIMLYLKLVGKKLSDNQVCMELGCVEDQEREMR
VCDGEEGPWIRYWVQRFDGTLKATGRFGPSPVDIMKLAEEPPRFLLPASL
EQDIIRLVLLLYARIASAGSSDGDSSHMNVYHQIMQQEGEQVFAY*

spliced messenger RNA

>Ggra1310.t1 ID=Ggra1310.t1|Name=Ggra1310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2388bp|location=Sequence derived from alignment at tig00000092_pilon:68862..71249+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCGGAACTCATGTCACTCTCGCAGTTTTGGCTTTCTGTGTTAT
CGTCGGAGAACCATCGCATGCTGGTGAACACACACCAACGCATACCGTTG
GTTTGCAAAACGCCGAACAAACTTCACAAGCCGTGTCTCCGTCTCTAATA
GTCCCTTTCCTTGTCGGCCTCGTTGTACCTTGTGTGTTAAAATTGCTTCT
CGATTATCTCGCTCAGTTTTCCGAGGTTCGCCCCGTTAATACGGCCCTTC
TCTACGCCCAAATTGCTGTCTACATCGTGGCCCATTATATTTCGTTATTC
ATTGGCGTGGGCACCTTGCTTTTCGCGGCGGTGGAGCGACCCCAAAATTT
TGCCGATCTCGCCTGTGGCGCAATTGGATGTTTGGCTTCGATGTACTCCT
TTGACTTTACGCTCACGGCTGCGTCCAAATTTCGCAAGATCTGGTGCTGC
AAACAGTTTGTTAGCCTTCCCCCGCGAACACGCCGTCTGCTACCCAACAC
ACTTAAGAAACTCATCCACATTGCAAGTGGCTCCGACAGCTGCACCGAAC
TGCCCTTCTCACAATTCCTACAGCTGGTAGTGTTCTCCTTACAACTTGCC
GATGAGCAACTATTGCACAACATACTCGATGCAAGCTGTTCGGGTCCCAC
GGCGCGCAGACTCGCTCATCTGGTGAAACGACTCCCCTCATTTCGACGTG
CTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCCTGCA
CGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGGAGCG
CGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATAAGGAGCTTTTGG
ACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGCCAAG
CTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCGATGT
AGGGCGGGGCTACTTGCTACCCGACACACTTAACAAACTCATTCACGTTG
CAAATCGCTCCGACAGCTGCACCGAACTGCCCTTCTCACAATTCTTACAG
CTGGTAGAGTTCTCCTTACAACTTGCCGATGAGCAAATATTGCACAACAT
ACTCGATGCAAGCTGTTCGGGTCCCACGGCGCGCAGACTCGCTCATCTGG
TGAAACGACTCCCCTCATTTCGACGTGCTCTCCAAACCAAGAATCGTTTC
GTATTCGATGCGTTTGCACTTCCTGCACGTGAAGCCACGAGACCCGATTC
TCCAAATAGTGTTTCTTTCTCGGAGCGCGTGGATTTGGCCACGTACTTTT
TGAAGCTTCAAGATAAGGAGCTTTTGGACACTCTTTTCCATCCCAGCATT
GGAAGCACATCGACTTGTGCAGCCAAGCTTCGCCAACTTTACGATCGTGT
TGTGGATCCGAACGGTTTTTCCGATGTAGGGCGGGGCTACTTGCTACCCG
ACACACTTAACAAACTCATTCACGTTGCAAATCGCTCCGACAGCTGCACC
GAACTGCCCTTCTCACAATTCTTACAGCTGGTAGAGTTCTGCTTACAACT
TGCCGATGAGCAAATATTGCACAACATACTCGATGCAAGCTGTTCGGGTC
CCACGGCGCGTAGACTCGCTCATCTGGCGAAACGACTCCCCTCATTTCGA
CGTGCTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCC
TGCACGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGG
AGCGCGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATACGGAGCTT
TTGGACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGC
CAAGCTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCG
ATAAAGGGCGGGGCTACTTGCCCGTCGCGCTCAAAGATCTACTACTGAGT
ATGTCTGCTGAGAACCATTCAACAACCCTTGCGTTTGCAGTGCAGGTGGA
ATTGATCATGTTGTATCTCAAACTAGTTGGCAAGAAATTGTCTGATAATC
AGGTATGTATGGAGCTGGGATGTGTGGAAGATCAAGAGCGGGAAATGAGA
GTTTGTGATGGAGAAGAGGGCCCTTGGATCCGTTACTGGGTTCAACGTTT
CGACGGTACTCTAAAAGCGACTGGTCGATTTGGACCTTCACCGGTTGACA
TAATGAAGTTAGCGGAAGAACCGCCACGTTTTCTTCTGCCTGCCAGTCTA
GAACAGGACATCATCCGTCTTGTGTTGCTTCTGTACGCGCGCATCGCAAG
TGCTGGATCTTCTGACGGAGATTCATCGCACATGAACGTTTACCATCAAA
TCATGCAACAGGAGGGTGAACAGGTTTTTGCATATTAA

protein sequence of Ggra1310.t1

>Ggra1310.t1 ID=Ggra1310.t1|Name=Ggra1310.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=796bp
MSLGTHVTLAVLAFCVIVGEPSHAGEHTPTHTVGLQNAEQTSQAVSPSLI
VPFLVGLVVPCVLKLLLDYLAQFSEVRPVNTALLYAQIAVYIVAHYISLF
IGVGTLLFAAVERPQNFADLACGAIGCLASMYSFDFTLTAASKFRKIWCC
KQFVSLPPRTRRLLPNTLKKLIHIASGSDSCTELPFSQFLQLVVFSLQLA
DEQLLHNILDASCSGPTARRLAHLVKRLPSFRRALQTKNRFVFDAFALPA
REATRPDSPNSVSFSERVDLATYFLKLQDKELLDTLFHPSIGSTSTCAAK
LRQLYDRVVDPNNFSDVGRGYLLPDTLNKLIHVANRSDSCTELPFSQFLQ
LVEFSLQLADEQILHNILDASCSGPTARRLAHLVKRLPSFRRALQTKNRF
VFDAFALPAREATRPDSPNSVSFSERVDLATYFLKLQDKELLDTLFHPSI
GSTSTCAAKLRQLYDRVVDPNGFSDVGRGYLLPDTLNKLIHVANRSDSCT
ELPFSQFLQLVEFCLQLADEQILHNILDASCSGPTARRLAHLAKRLPSFR
RALQTKNRFVFDAFALPAREATRPDSPNSVSFSERVDLATYFLKLQDTEL
LDTLFHPSIGSTSTCAAKLRQLYDRVVDPNNFSDKGRGYLPVALKDLLLS
MSAENHSTTLAFAVQVELIMLYLKLVGKKLSDNQVCMELGCVEDQEREMR
VCDGEEGPWIRYWVQRFDGTLKATGRFGPSPVDIMKLAEEPPRFLLPASL
EQDIIRLVLLLYARIASAGSSDGDSSHMNVYHQIMQQEGEQVFAY*

mRNA from alignment at tig00000092_pilon:68862..71249+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1310.t1 ID=Ggra1310.t1|Name=Ggra1310.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2388bp|location=Sequence derived from alignment at tig00000092_pilon:68862..71249+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCGGAACTCATGTCACTCTCGCAGTTTTGGCTTTCTGTGTTAT
CGTCGGAGAACCATCGCATGCTGGTGAACACACACCAACGCATACCGTTG
GTTTGCAAAACGCCGAACAAACTTCACAAGCCGTGTCTCCGTCTCTAATA
GTCCCTTTCCTTGTCGGCCTCGTTGTACCTTGTGTGTTAAAATTGCTTCT
CGATTATCTCGCTCAGTTTTCCGAGGTTCGCCCCGTTAATACGGCCCTTC
TCTACGCCCAAATTGCTGTCTACATCGTGGCCCATTATATTTCGTTATTC
ATTGGCGTGGGCACCTTGCTTTTCGCGGCGGTGGAGCGACCCCAAAATTT
TGCCGATCTCGCCTGTGGCGCAATTGGATGTTTGGCTTCGATGTACTCCT
TTGACTTTACGCTCACGGCTGCGTCCAAATTTCGCAAGATCTGGTGCTGC
AAACAGTTTGTTAGCCTTCCCCCGCGAACACGCCGTCTGCTACCCAACAC
ACTTAAGAAACTCATCCACATTGCAAGTGGCTCCGACAGCTGCACCGAAC
TGCCCTTCTCACAATTCCTACAGCTGGTAGTGTTCTCCTTACAACTTGCC
GATGAGCAACTATTGCACAACATACTCGATGCAAGCTGTTCGGGTCCCAC
GGCGCGCAGACTCGCTCATCTGGTGAAACGACTCCCCTCATTTCGACGTG
CTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCCTGCA
CGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGGAGCG
CGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATAAGGAGCTTTTGG
ACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGCCAAG
CTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCGATGT
AGGGCGGGGCTACTTGCTACCCGACACACTTAACAAACTCATTCACGTTG
CAAATCGCTCCGACAGCTGCACCGAACTGCCCTTCTCACAATTCTTACAG
CTGGTAGAGTTCTCCTTACAACTTGCCGATGAGCAAATATTGCACAACAT
ACTCGATGCAAGCTGTTCGGGTCCCACGGCGCGCAGACTCGCTCATCTGG
TGAAACGACTCCCCTCATTTCGACGTGCTCTCCAAACCAAGAATCGTTTC
GTATTCGATGCGTTTGCACTTCCTGCACGTGAAGCCACGAGACCCGATTC
TCCAAATAGTGTTTCTTTCTCGGAGCGCGTGGATTTGGCCACGTACTTTT
TGAAGCTTCAAGATAAGGAGCTTTTGGACACTCTTTTCCATCCCAGCATT
GGAAGCACATCGACTTGTGCAGCCAAGCTTCGCCAACTTTACGATCGTGT
TGTGGATCCGAACGGTTTTTCCGATGTAGGGCGGGGCTACTTGCTACCCG
ACACACTTAACAAACTCATTCACGTTGCAAATCGCTCCGACAGCTGCACC
GAACTGCCCTTCTCACAATTCTTACAGCTGGTAGAGTTCTGCTTACAACT
TGCCGATGAGCAAATATTGCACAACATACTCGATGCAAGCTGTTCGGGTC
CCACGGCGCGTAGACTCGCTCATCTGGCGAAACGACTCCCCTCATTTCGA
CGTGCTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCC
TGCACGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGG
AGCGCGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATACGGAGCTT
TTGGACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGC
CAAGCTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCG
ATAAAGGGCGGGGCTACTTGCCCGTCGCGCTCAAAGATCTACTACTGAGT
ATGTCTGCTGAGAACCATTCAACAACCCTTGCGTTTGCAGTGCAGGTGGA
ATTGATCATGTTGTATCTCAAACTAGTTGGCAAGAAATTGTCTGATAATC
AGGTATGTATGGAGCTGGGATGTGTGGAAGATCAAGAGCGGGAAATGAGA
GTTTGTGATGGAGAAGAGGGCCCTTGGATCCGTTACTGGGTTCAACGTTT
CGACGGTACTCTAAAAGCGACTGGTCGATTTGGACCTTCACCGGTTGACA
TAATGAAGTTAGCGGAAGAACCGCCACGTTTTCTTCTGCCTGCCAGTCTA
GAACAGGACATCATCCGTCTTGTGTTGCTTCTGTACGCGCGCATCGCAAG
TGCTGGATCTTCTGACGGAGATTCATCGCACATGAACGTTTACCATCAAA
TCATGCAACAGGAGGGTGAACAGGTTTTTGCATATTAA

Coding sequence (CDS) from alignment at tig00000092_pilon:68862..71249+

>Ggra1310.t1 ID=Ggra1310.t1|Name=Ggra1310.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2388bp|location=Sequence derived from alignment at tig00000092_pilon:68862..71249+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCGGAACTCATGTCACTCTCGCAGTTTTGGCTTTCTGTGTTAT
CGTCGGAGAACCATCGCATGCTGGTGAACACACACCAACGCATACCGTTG
GTTTGCAAAACGCCGAACAAACTTCACAAGCCGTGTCTCCGTCTCTAATA
GTCCCTTTCCTTGTCGGCCTCGTTGTACCTTGTGTGTTAAAATTGCTTCT
CGATTATCTCGCTCAGTTTTCCGAGGTTCGCCCCGTTAATACGGCCCTTC
TCTACGCCCAAATTGCTGTCTACATCGTGGCCCATTATATTTCGTTATTC
ATTGGCGTGGGCACCTTGCTTTTCGCGGCGGTGGAGCGACCCCAAAATTT
TGCCGATCTCGCCTGTGGCGCAATTGGATGTTTGGCTTCGATGTACTCCT
TTGACTTTACGCTCACGGCTGCGTCCAAATTTCGCAAGATCTGGTGCTGC
AAACAGTTTGTTAGCCTTCCCCCGCGAACACGCCGTCTGCTACCCAACAC
ACTTAAGAAACTCATCCACATTGCAAGTGGCTCCGACAGCTGCACCGAAC
TGCCCTTCTCACAATTCCTACAGCTGGTAGTGTTCTCCTTACAACTTGCC
GATGAGCAACTATTGCACAACATACTCGATGCAAGCTGTTCGGGTCCCAC
GGCGCGCAGACTCGCTCATCTGGTGAAACGACTCCCCTCATTTCGACGTG
CTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCCTGCA
CGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGGAGCG
CGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATAAGGAGCTTTTGG
ACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGCCAAG
CTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCGATGT
AGGGCGGGGCTACTTGCTACCCGACACACTTAACAAACTCATTCACGTTG
CAAATCGCTCCGACAGCTGCACCGAACTGCCCTTCTCACAATTCTTACAG
CTGGTAGAGTTCTCCTTACAACTTGCCGATGAGCAAATATTGCACAACAT
ACTCGATGCAAGCTGTTCGGGTCCCACGGCGCGCAGACTCGCTCATCTGG
TGAAACGACTCCCCTCATTTCGACGTGCTCTCCAAACCAAGAATCGTTTC
GTATTCGATGCGTTTGCACTTCCTGCACGTGAAGCCACGAGACCCGATTC
TCCAAATAGTGTTTCTTTCTCGGAGCGCGTGGATTTGGCCACGTACTTTT
TGAAGCTTCAAGATAAGGAGCTTTTGGACACTCTTTTCCATCCCAGCATT
GGAAGCACATCGACTTGTGCAGCCAAGCTTCGCCAACTTTACGATCGTGT
TGTGGATCCGAACGGTTTTTCCGATGTAGGGCGGGGCTACTTGCTACCCG
ACACACTTAACAAACTCATTCACGTTGCAAATCGCTCCGACAGCTGCACC
GAACTGCCCTTCTCACAATTCTTACAGCTGGTAGAGTTCTGCTTACAACT
TGCCGATGAGCAAATATTGCACAACATACTCGATGCAAGCTGTTCGGGTC
CCACGGCGCGTAGACTCGCTCATCTGGCGAAACGACTCCCCTCATTTCGA
CGTGCTCTCCAAACCAAGAATCGTTTCGTATTCGATGCGTTTGCACTTCC
TGCACGTGAAGCCACGAGACCCGATTCTCCAAATAGTGTTTCTTTCTCGG
AGCGCGTGGATTTGGCCACGTACTTTTTGAAGCTTCAAGATACGGAGCTT
TTGGACACTCTTTTCCATCCCAGCATTGGAAGCACATCGACTTGTGCAGC
CAAGCTTCGCCAACTTTACGATCGTGTTGTGGATCCGAACAATTTTTCCG
ATAAAGGGCGGGGCTACTTGCCCGTCGCGCTCAAAGATCTACTACTGAGT
ATGTCTGCTGAGAACCATTCAACAACCCTTGCGTTTGCAGTGCAGGTGGA
ATTGATCATGTTGTATCTCAAACTAGTTGGCAAGAAATTGTCTGATAATC
AGGTATGTATGGAGCTGGGATGTGTGGAAGATCAAGAGCGGGAAATGAGA
GTTTGTGATGGAGAAGAGGGCCCTTGGATCCGTTACTGGGTTCAACGTTT
CGACGGTACTCTAAAAGCGACTGGTCGATTTGGACCTTCACCGGTTGACA
TAATGAAGTTAGCGGAAGAACCGCCACGTTTTCTTCTGCCTGCCAGTCTA
GAACAGGACATCATCCGTCTTGTGTTGCTTCTGTACGCGCGCATCGCAAG
TGCTGGATCTTCTGACGGAGATTCATCGCACATGAACGTTTACCATCAAA
TCATGCAACAGGAGGGTGAACAGGTTTTTGCATATTAA