Ggra1305.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1305.t1
Unique NameGgra1305.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:55217..56585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703565.1
Preferred nameTHOC5
PFAMsFimP
Max annot lvl2759|Eukaryota
KEGG koko:K05291,ko:K13174
KEGG Pathwayko00563,ko01100,ko03013,map00563,map01100,map03013
KEGG ModuleM00405,M00406
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000346,GO:0000347,GO:0000445,GO:0000902,GO:0001701,GO:0001824,GO:0002376,GO:0002520,GO:0002521,GO:0002573,GO:0002682,GO:0002683,GO:0002761,GO:0002762,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006996,GO:0007049,GO:0007140,GO:0007275,GO:0007276,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010793,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017145,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030097,GO:0030099,GO:0030154,GO:0030224,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032239,GO:0032386,GO:0032501,GO:0032502,GO:0032504,GO:0032784,GO:0032786,GO:0032879,GO:0032880,GO:0032989,GO:0032991,GO:0033036,GO:0033157,GO:0033554,GO:0034605,GO:0034613,GO:0034641,GO:0035162,GO:0042886,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044403,GO:0044417,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044766,GO:0045184,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045649,GO:0045650,GO:0045787,GO:0045893,GO:0045935,GO:0046483,GO:0046784,GO:0046822,GO:0046825,GO:0046831,GO:0046907,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048568,GO:0048583,GO:0048585,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051028,GO:0051049,GO:0051093,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051301,GO:0051302,GO:0051321,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051716,GO:0051726,GO:0051836,GO:0060215,GO:0060255,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090087,GO:0090304,GO:0097159,GO:0140013,GO:1901360,GO:1901363,GO:1901976,GO:1901977,GO:1902105,GO:1902106,GO:1902579,GO:1902680,GO:1903046,GO:1903131,GO:1903506,GO:1903508,GO:1903706,GO:1903707,GO:1903827,GO:2000001,GO:2000002,GO:2000026,GO:2000035,GO:2000112,GO:2000197,GO:2001020,GO:2001021,GO:2001141
Evalue3.84e-17
EggNOG OGsKOG2216@1|root,KOG2216@2759|Eukaryota
Descriptionpositive regulation of DNA-templated transcription, elongation
COG categoryE
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1305Ggra1305Gracilaria gracilis GNS1m malegenetig00000092_pilon 55217..57034 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1Ggra1305.t1Gracilaria gracilis GNS1m malepolypeptidetig00000092_pilon 55217..56585 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1.start1Ggra1305.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000092_pilon 55217..55219 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1.CDS1Ggra1305.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000092_pilon 55217..56437 +
Ggra1305.t1.CDS2Ggra1305.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000092_pilon 56538..56585 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1.exon1Ggra1305.t1.exon1Gracilaria gracilis GNS1m maleexontig00000092_pilon 55217..56437 +
Ggra1305.t1.exon2Ggra1305.t1.exon2Gracilaria gracilis GNS1m maleexontig00000092_pilon 56538..56585 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1.intron1Ggra1305.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000092_pilon 56438..56537 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1.stop1Ggra1305.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000092_pilon 56583..56585 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=423bp
MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGG
PKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKL
LNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPSAPTVEDDGS
AKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPT
LLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYR
DSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSY
HVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLER
GTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSR
AMEISGHSFLRVLGYELNPSPS*
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spliced messenger RNA

>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1269bp|location=Sequence derived from alignment at tig00000092_pilon:55217..56585+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAGTACTGTTTCAAACGATGAAAAAAGCATGAGTTTGCTCTTGGA
AGGCTCCAAGCACGCGATAAGCACGCTTAGGGATTCGATATTGGTTACAT
CCAGAGATAATGCGTTGAATCTCATGTCAAGCTCAAGCGAAAACGGTGGT
CCCAAGTCTTCAGAGTCCTCTGAATCTCACTTGCGAGGAATATCCCGGTC
ACTGGTCACCCAGTTTGTGAGTTTAAAGAGCTCCCATGATCTTCTTATTA
GACAAGTGGACAATTCTCGTAAGGAAAGTCGTAAAGAGCAAGACAAGCTT
TTAAACGCGCGGTCACGACTTGATAACCTCAAGTACGAGATGAGAATGCT
CCAAGATGAGATTGAGTCATGTGAAACCGGATCTTCCAGTCATATGAAAA
AGCTCGACTTGCAAATTCCAAGTGCTCCTACTGTCGAAGACGATGGCTCA
GCAAAGCACCAGCATACAATGGACACCTTGAGCAACGAATTGCTAAGACG
AAAAGCAGCACAGAAGCAACTTGAAGCAGTTCTAGATGTAGTGAAGTTGA
AACGCAAGGAACTTGAGAACACCAAATCTGCACTTCGAGGGTTGCCAACC
TTGCTCGGTTCCCTAGATAACGATCTAAAACCACTGCGAACCCTCATCCA
TAAGAAGCCAGTCAAGTATACAACAAGTCCAACAATCCCAGAAGCTCAAC
AACTACCTGCTCCTTTGTATGTTCTAACCCGCCAAGCAATGGGCTACCGA
GACTCGTTCGGTGATCTCTCGGTTTCAATTCTCGGGGATGCACCTAAAAG
GCCACTCCGGAAGGATCCTTACGCCGTGCATCCGATGCGGGTTCAAATTG
ATGTACATTGCAATGGAATTGAGCAGGCTTTGCGAGTCAAGTTTTCGTAT
CATGTCAATCTGAATATTGTTAGCGTATCTTCTGTAATAGTGGCAGATGG
AACTGAAACACCTTCGTATCCGACAAAAGAACTTCAGATGCTTTATCCTT
TCGATTTTGGAGAAGAATCACCTAACCCAGGCAATGCTTATCTCGAAAGA
GGTACTTTCAAGTTCGACATATCAAAGGCACATGGGTCACGTCCTTTTGT
ATGGGCCAACGTTGTCTGCGGAATAACCAGCATGTTGCCCATTGAGTCGC
ACAAGGCCCGAATCGTCGACCAGTTTCAGTTCGCCAAATGGCCATCTCGA
GCAATGGAAATCAGTGGGCACTCGTTCCTGCGGGTATTGGGATACGAACT
GAACCCAAGTCCAAGTTAG
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protein sequence of Ggra1305.t1

>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGG
PKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKL
LNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPSAPTVEDDGS
AKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPT
LLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYR
DSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSY
HVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLER
GTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSR
AMEISGHSFLRVLGYELNPSPS*
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mRNA from alignment at tig00000092_pilon:55217..56585+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1369bp|location=Sequence derived from alignment at tig00000092_pilon:55217..56585+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTACTGTTTCAAACGATGAAAAAAGCATGAGTTTGCTCTTGGA
AGGCTCCAAGCACGCGATAAGCACGCTTAGGGATTCGATATTGGTTACAT
CCAGAGATAATGCGTTGAATCTCATGTCAAGCTCAAGCGAAAACGGTGGT
CCCAAGTCTTCAGAGTCCTCTGAATCTCACTTGCGAGGAATATCCCGGTC
ACTGGTCACCCAGTTTGTGAGTTTAAAGAGCTCCCATGATCTTCTTATTA
GACAAGTGGACAATTCTCGTAAGGAAAGTCGTAAAGAGCAAGACAAGCTT
TTAAACGCGCGGTCACGACTTGATAACCTCAAGTACGAGATGAGAATGCT
CCAAGATGAGATTGAGTCATGTGAAACCGGATCTTCCAGTCATATGAAAA
AGCTCGACTTGCAAATTCCAAGTGCTCCTACTGTCGAAGACGATGGCTCA
GCAAAGCACCAGCATACAATGGACACCTTGAGCAACGAATTGCTAAGACG
AAAAGCAGCACAGAAGCAACTTGAAGCAGTTCTAGATGTAGTGAAGTTGA
AACGCAAGGAACTTGAGAACACCAAATCTGCACTTCGAGGGTTGCCAACC
TTGCTCGGTTCCCTAGATAACGATCTAAAACCACTGCGAACCCTCATCCA
TAAGAAGCCAGTCAAGTATACAACAAGTCCAACAATCCCAGAAGCTCAAC
AACTACCTGCTCCTTTGTATGTTCTAACCCGCCAAGCAATGGGCTACCGA
GACTCGTTCGGTGATCTCTCGGTTTCAATTCTCGGGGATGCACCTAAAAG
GCCACTCCGGAAGGATCCTTACGCCGTGCATCCGATGCGGGTTCAAATTG
ATGTACATTGCAATGGAATTGAGCAGGCTTTGCGAGTCAAGTTTTCGTAT
CATGTCAATCTGAATATTGTTAGCGTATCTTCTGTAATAGTGGCAGATGG
AACTGAAACACCTTCGTATCCGACAAAAGAACTTCAGATGCTTTATCCTT
TCGATTTTGGAGAAGAATCACCTAACCCAGGCAATGCTTATCTCGAAAGA
GGTACTTTCAAGTTCGACATATCAAAGGCACATGGGTCACGTCCTTTTGT
ATGGGCCAACGTTGTCTGCGGAATAACCAGCATGTTGCCCATTGAGTCGC
ACAAGGCCCGAATCGTCGACCAGTTTCAGTTCGCCAAATGGCCATCTCGA
GCAATGGAAATCAGTGGGCACGTAAGGTTTAAGGATGTGTTTGAAACACT
CAAAAGTCGCCTCAAGAGTATCGTATCTCTCAAGAAACAAATCGAATTGC
TCTTGTCGAAAAGTCTTCCAGTCGTTCCTGCGGGTATTGGGATACGAACT
GAACCCAAGTCCAAGTTAG
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Coding sequence (CDS) from alignment at tig00000092_pilon:55217..56585+

>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1269bp|location=Sequence derived from alignment at tig00000092_pilon:55217..56585+ (Gracilaria gracilis GNS1m male)
ATGGCAAGTACTGTTTCAAACGATGAAAAAAGCATGAGTTTGCTCTTGGA
AGGCTCCAAGCACGCGATAAGCACGCTTAGGGATTCGATATTGGTTACAT
CCAGAGATAATGCGTTGAATCTCATGTCAAGCTCAAGCGAAAACGGTGGT
CCCAAGTCTTCAGAGTCCTCTGAATCTCACTTGCGAGGAATATCCCGGTC
ACTGGTCACCCAGTTTGTGAGTTTAAAGAGCTCCCATGATCTTCTTATTA
GACAAGTGGACAATTCTCGTAAGGAAAGTCGTAAAGAGCAAGACAAGCTT
TTAAACGCGCGGTCACGACTTGATAACCTCAAGTACGAGATGAGAATGCT
CCAAGATGAGATTGAGTCATGTGAAACCGGATCTTCCAGTCATATGAAAA
AGCTCGACTTGCAAATTCCAAGTGCTCCTACTGTCGAAGACGATGGCTCA
GCAAAGCACCAGCATACAATGGACACCTTGAGCAACGAATTGCTAAGACG
AAAAGCAGCACAGAAGCAACTTGAAGCAGTTCTAGATGTAGTGAAGTTGA
AACGCAAGGAACTTGAGAACACCAAATCTGCACTTCGAGGGTTGCCAACC
TTGCTCGGTTCCCTAGATAACGATCTAAAACCACTGCGAACCCTCATCCA
TAAGAAGCCAGTCAAGTATACAACAAGTCCAACAATCCCAGAAGCTCAAC
AACTACCTGCTCCTTTGTATGTTCTAACCCGCCAAGCAATGGGCTACCGA
GACTCGTTCGGTGATCTCTCGGTTTCAATTCTCGGGGATGCACCTAAAAG
GCCACTCCGGAAGGATCCTTACGCCGTGCATCCGATGCGGGTTCAAATTG
ATGTACATTGCAATGGAATTGAGCAGGCTTTGCGAGTCAAGTTTTCGTAT
CATGTCAATCTGAATATTGTTAGCGTATCTTCTGTAATAGTGGCAGATGG
AACTGAAACACCTTCGTATCCGACAAAAGAACTTCAGATGCTTTATCCTT
TCGATTTTGGAGAAGAATCACCTAACCCAGGCAATGCTTATCTCGAAAGA
GGTACTTTCAAGTTCGACATATCAAAGGCACATGGGTCACGTCCTTTTGT
ATGGGCCAACGTTGTCTGCGGAATAACCAGCATGTTGCCCATTGAGTCGC
ACAAGGCCCGAATCGTCGACCAGTTTCAGTTCGCCAAATGGCCATCTCGA
GCAATGGAAATCAGTGGGCACTCGTTCCTGCGGGTATTGGGATACGAACT
GAACCCAAGTCCAAGTTAG
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