Ggra1305.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1305.t1
Unique NameGgra1305.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length423
Homology
BLAST of Ggra1305.t1 vs. uniprot
Match: A0A2V3IHL4 (THO complex subunit 5-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHL4_9FLOR)

HSP 1 Score: 475 bits (1223), Expect = 4.850e-161
Identity = 251/408 (61.52%), Postives = 316/408 (77.45%), Query Frame = 0
Query:    1 MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGGPKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPS-APTVEDDGSAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSYHVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGH 407
            M S +S     + L LE ++ AIS +RDSI+ +S+   +   S++ E       +SS+   R +SR L+  F++LK+SHDLLI+QVD +RK SR EQDKLLNARSRLDNL YE +MLQDEI  CETG  +H++KLD+ IP  +   +DDG+  HQ TM+ LS ELL+RKAAQK+++++L V K KRKEL++TKSALR LP LL SL NDLKPLR L   KP+  +++  + +AQ LPAPLYVL RQA+GY +++G+LSVSI G+  K+ +RKD YA HPMRVQIDV C GI Q+LRVKF YH NL+IVSVSSVIVADGTETPSYPTKELQMLYP+DFGEESP+ GN+YLERG+F+FD++KAHG RPFVWANVVCGITSMLP ES+ AR+ ++ QFAKWP  AME+SGH
Sbjct:    1 MTSCLSKLSDDVRLSLEKAQSAISAIRDSIMWSSKTQ-IGFDSTAKE-------QSSQDEFRDMSRKLLGHFITLKTSHDLLIKQVDEARKNSRIEQDKLLNARSRLDNLMYETKMLQDEINLCETGPQAHVQKLDVPIPDFSSQSDDDGARAHQRTMEALSEELLKRKAAQKEVDSILQVAKKKRKELDDTKSALRDLPNLLSSLANDLKPLRALGQNKPMAQSSNTLLSQAQHLPAPLYVLARQAVGYSEAYGNLSVSITGEGSKKQVRKDIYAQHPMRVQIDVLCEGIPQSLRVKFGYHTNLHIVSVSSVIVADGTETPSYPTKELQMLYPYDFGEESPSAGNSYLERGSFRFDVTKAHGCRPFVWANVVCGITSMLPTESYNARLENESQFAKWPVTAMELSGH 400          
BLAST of Ggra1305.t1 vs. uniprot
Match: R7QLX8 (THO complex subunit 5 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLX8_CHOCR)

HSP 1 Score: 177 bits (449), Expect = 2.850e-46
Identity = 115/354 (32.49%), Postives = 193/354 (54.52%), Query Frame = 0
Query:   61 LRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPS-AP--TVEDDGSAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGD-LSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCN---GIEQALRVKFSYHVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGH 407
            +R  S+ ++   V  K +HD +IR+VD++R+ S+ +   L   R R   L YE  +L+ +I++     +  + K+ +++P  AP    E++    H  T+  L  EL +R+  + +++ ++   K KR +L   K  LR LP  + +L N ++P+R L+        + P + + + LP PLYVLTR+A  +R  F   L++S+L +  K    +  Y  HP  V++D+      G    L+V F +H  L++V+V+S I      +     K LQ+L+P+D GE SPNP N++LE G F FD+SKA G+RPFVWAN++CG+  +   ++     V++   A WP+ A     H
Sbjct:   44 IRRPSQKILAYTVMAKVAHDAIIRKVDSARRNSQADIAMLQKLRQRSACLGYERMLLERQIDAQRAVKAPTVDKVSVKLPHPAPQNASEEESMDVHIDTIKALCAELQKRQRVRDEVDGLVKRTKRKRDQLVTMKDDLRSLPRAVATLRNAIEPVRKLLKVGEELAASPPELAQIRLLPVPLYVLTREAFAFRTMFPKILNISLLEEQAKL---EGVYRPHPRLVRMDIQAGEHIGAGVCLQVFFRFHPELHVVTVTSRIANSEQPSAKMDGKLLQLLFPYDVGETSPNPCNSHLENGAFSFDVSKAGGARPFVWANLLCGLPCLERFDT-----VNEIVGAGWPTEAAGHEAH 389          
BLAST of Ggra1305.t1 vs. uniprot
Match: M2WT23 (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WT23_GALSU)

HSP 1 Score: 94.7 bits (234), Expect = 3.980e-17
Identity = 88/351 (25.07%), Postives = 155/351 (44.16%), Query Frame = 0
Query:   95 KEQDKLLNARSRLDNLKYEMRMLQDEIESCET--GSSSHMKKLDLQIPSAPTVEDDG----SAKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPTLLGSLDNDLKPLRTLIHK-----KPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGD-----LSVSILGD-----------APKRPLRKDPYAVHPMRVQIDVHC-------NGIEQALRVKFSYHVNLNIVSVS-SVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLERGTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSRAMEISGHSFL 410
            K ++++ N++  L+N  Y+   L++EI SC++  G    +  + L+  S     ++G      +HQ  +  L  E  RR++                     ++  L  LP  +  +      + T         +   +    ++     LP PLYVL RQA  ++ +F         + I+GD           + +    ++ Y +HP++VQ+++         + +++ + V FSY + L IV VS S   +DG    +  T++   L+P D G  SPNP N YLE G F+F  SK  G+RPF+WA ++CG+    P E + +      +  +W   A+  S H  L
Sbjct:   85 KHKEQVQNSQIILENYLYQREQLKEEIASCQSYRGLIDEISLITLEEASLSVPSEEGLDSFEYEHQVMLKRLEAEKERRQSLXXXXXXXXXXXXXXXXXXXXSRQFLENLPKEIEKIHVAANRVSTFFFDYGFAGRFFNFLCEDSLKRMFLLPFPLYVLARQAYAFQHTFQSEQHLHFRMDIVGDTVAAESICDAFSTRWKEHENLYQMHPLQVQLELGGQPKGALDSTLQKTVTVTFSYLLCLEIVVVSCSGNASDG----NLITEQFAFLFPGDDGSHSPNPTNHYLEEGKFQFQPSKVGGARPFIWAQIICGLG--FPFELNLSSSTKDAK--EWLQNALNYSKHIVL 427          
BLAST of Ggra1305.t1 vs. uniprot
Match: THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB (THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB)

HSP 1 Score: 67.8 bits (164), Expect = 1.790e-8
Identity = 100/382 (26.18%), Postives = 160/382 (41.88%), Query Frame = 0
Query:   73 VSLKSSHDLLIRQVDNSRKESRKEQDKLLNARSRLDNLKYEMRMLQDEIESCETGSSSH-------MKKLDLQIPSAPTVEDDGSAK-HQHTMDTLSNELLRR-------KAAQKQLEAVLDVVKLKRKELENTKSALRG-LPTLLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYRDSFGDLSVSILGDAPKRPLR------------------------------KDP------------YAVHPMRVQIDVHCNGIEQALRVKFSYHVNLNIVSVS-SVIVADGTETPSY-----PTKELQMLYPFDFGEESPNPGNAYLER--GTFKFDISKAHGSRPFVWANVVCGI-----TSMLPIES 383
            VSLK  + L   +  N R+E  +++  + +   +L NL YE+  L+ E+  C    S         +++   + P++   ED  S   H+  +  L  ELL+R       K  Q++ E V   +K KR +LEN    L+  L T    LDN        +++ P+          A  LP PLY L  Q++  ++   +  V ++    +  LR                              KDP             A HP+ + I +  N    ++ +KFSY +NL +V+V  SV +++     S      P   L  LYP D+GE SPNP N +  +  G   FD  +A G+ P+ WA  + G+     TS+  IE+
Sbjct:   99 VSLKKLNRLEKIRTKNLREELHQKKQLVDSYELQLQNLLYELMYLKKEVTKCLQFKSKDEDIELIPVEQFYAEAPNSVKEEDITSQDPHKLRLARLQWELLQRQQLATKCKELQEEKERVTTEIKRKRSQLENLAPLLKTVLATAKPVLDNLGLTAGHSLNEHPL----------ASVLPHPLYFLYVQSVALKEVTDESMVVLINGEEEEALRAKEYVIDSQMLEDSDSDAEPEFQKEERHSWKDPKLDKKAEHLKKLLAEHPLSLTISIPINENGSSISMKFSYLLNLRVVTVRISVQISESIRGISASALLNPFNILSALYPGDYGEISPNPANFHQLKQVGVQSFD-REALGT-PYNWAQKIAGLDFEGCTSVNKIEA 468          
The following BLAST results are available for this feature:
BLAST of Ggra1305.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IHL44.850e-16161.52THO complex subunit 5-like n=1 Tax=Gracilariopsis ... [more]
R7QLX82.850e-4632.49THO complex subunit 5 homolog n=1 Tax=Chondrus cri... [more]
M2WT233.980e-1725.07Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
THO complex subunit 5 homolog B n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F9BDFB1.790e-826.18THO complex subunit 5 homolog B n=1 Tax=Bemisia ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 171..191
NoneNo IPR availableCOILSCoilCoilcoord: 100..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..61
NoneNo IPR availablePANTHERPTHR13375:SF3THO COMPLEX SUBUNIT 5 HOMOLOGcoord: 271..382
coord: 42..266
IPR019163THO complex, subunit 5PFAMPF09766FmiP_Thoc5coord: 270..375
e-value: 1.1E-15
score: 57.8
coord: 75..264
e-value: 5.0E-22
score: 78.7
IPR019163THO complex, subunit 5PANTHERPTHR13375FMS INTERACTING PROTEINcoord: 271..382
coord: 42..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:55217..56585 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1305.t1Ggra1305.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 55217..56585 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1305.t1 ID=Ggra1305.t1|Name=Ggra1305.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=423bp
MASTVSNDEKSMSLLLEGSKHAISTLRDSILVTSRDNALNLMSSSSENGG
PKSSESSESHLRGISRSLVTQFVSLKSSHDLLIRQVDNSRKESRKEQDKL
LNARSRLDNLKYEMRMLQDEIESCETGSSSHMKKLDLQIPSAPTVEDDGS
AKHQHTMDTLSNELLRRKAAQKQLEAVLDVVKLKRKELENTKSALRGLPT
LLGSLDNDLKPLRTLIHKKPVKYTTSPTIPEAQQLPAPLYVLTRQAMGYR
DSFGDLSVSILGDAPKRPLRKDPYAVHPMRVQIDVHCNGIEQALRVKFSY
HVNLNIVSVSSVIVADGTETPSYPTKELQMLYPFDFGEESPNPGNAYLER
GTFKFDISKAHGSRPFVWANVVCGITSMLPIESHKARIVDQFQFAKWPSR
AMEISGHSFLRVLGYELNPSPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019163THO_Thoc5