Ggra1303.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1303.t1
Unique Name	Ggra1303.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	723

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000092_pilon	contig	tig00000092_pilon:50850..53018 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1303	Ggra1303	Gracilaria gracilis GNS1m male	gene	tig00000092_pilon 50850..53018 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1303.t1.start1	Ggra1303.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000092_pilon 50850..50852 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1303.t1.CDS1	Ggra1303.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000092_pilon 50850..53018 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1303.t1.exon1	Ggra1303.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000092_pilon 50850..53018 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1303.t1.stop1	Ggra1303.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000092_pilon 53016..53018 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1303.t1	Ggra1303.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000092_pilon 50850..53018 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000092_pilon:50850..53018+
coding sequence from alignment at tig00000092_pilon:50850..53018+

mRNA sequence

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp
MPVKSVSVNEEVHARRPNTCQWRAAKVLEDANQNHHRVVKLKFIGDTAVH
NIPWAHIKLFQYVKRDVLFRRTLPSRPPTRSSQKVISIDLTDLEHHEGAS
PQQIKNTRVNGRCSKTGQAEGETDPAMQLDYSSSVTSDHATKPASLKRKP
LSTDPCLASTSDLNAPLSLSDHDTAVQTASPSDDADTPQTSAEYVSTRMA
NSDKHTKSSSGNAIESPVKEVSRMYPIRRRTRRFSLEKNTVPPKKIKNNE
IIWDARPPRWEDELRKDLEKPTTLNTKTGSLLMRRRSTANGAVAIPRERH
PHRALGDIPIPRARPQLNGSLDSEYELNDEMCNLATGLTPSKRRRSSNDI
LYKDSMATNLSKFSSNGLRRRMRKKARRSCAEHDPSVSDVQRSTERLLEV
VSKSETNTLERFKSTARFPFVSESEELEDDVDKLINNGCDEMVDQHKNEV
QAMLQSFGDLDMKKKPLPVRIQGSRRKSAPKRWTDRKVTERTVFQLGTGG
PFFPRKKENLGEGDDIPSGLFNSSVQDSGSVNHEVRCGCQSPNSRRRNEL
VGKATIQCGLCGYWSHLECTGLARKAVEDIRGASSATKKHFACAFCLDEA
TYRSLNHATTRALGKSSRRAQPAGSANNRSDLGEDREWYSEISPVVQAGS
QTKKYNSRSSRRLPKSTIPSSRCRYRPRSPLSEAEIQARNENVEFLRSGV
LKPSVGLKERELIDSKTPNFSL*

spliced messenger RNA

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2169bp|location=Sequence derived from alignment at tig00000092_pilon:50850..53018+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGTGAAGTCGGTCTCGGTCAATGAGGAGGTGCACGCCCGTAGACC
AAACACCTGTCAGTGGCGAGCAGCCAAAGTCCTCGAGGATGCCAACCAAA
ATCACCACCGTGTCGTCAAGCTCAAGTTCATCGGCGATACTGCTGTTCAT
AACATTCCGTGGGCGCACATAAAGCTCTTCCAGTACGTCAAGCGCGATGT
TCTCTTCAGGAGGACGCTTCCATCACGTCCGCCCACTAGGTCTTCGCAGA
AAGTCATTTCTATCGATCTCACCGACTTGGAACATCATGAGGGGGCTTCC
CCGCAGCAGATCAAAAATACTCGAGTCAATGGTAGATGTTCGAAAACGGG
ACAGGCAGAAGGCGAAACAGACCCTGCCATGCAGCTGGATTACTCGTCTT
CTGTAACATCGGACCATGCGACAAAACCGGCGTCGTTGAAGCGAAAGCCG
CTGAGTACAGATCCTTGCTTAGCTTCAACTTCTGATTTGAACGCACCTCT
TTCACTTTCAGATCATGACACAGCTGTTCAGACTGCATCACCGTCTGATG
ATGCAGACACACCTCAAACCAGTGCAGAATATGTTTCGACCCGTATGGCC
AACAGCGACAAACACACTAAGTCTTCATCCGGAAATGCAATCGAGTCACC
AGTCAAGGAAGTGTCGAGAATGTATCCCATAAGGAGACGCACACGGCGTT
TTTCTCTTGAAAAGAACACTGTGCCACCAAAGAAGATTAAAAACAATGAA
ATCATCTGGGACGCAAGACCCCCACGTTGGGAAGACGAACTACGGAAAGA
TTTGGAAAAGCCGACAACTCTTAACACCAAGACCGGGAGCCTGCTTATGC
GTCGAAGATCTACAGCTAATGGCGCAGTAGCAATACCCCGTGAACGTCAT
CCTCATCGGGCTCTAGGTGATATTCCTATTCCACGTGCTCGCCCTCAACT
GAACGGCAGCTTGGACTCTGAATATGAATTGAATGACGAAATGTGCAACT
TAGCTACAGGTCTAACTCCGTCCAAACGACGTAGGTCTTCGAACGACATT
CTCTATAAAGACTCGATGGCGACGAATTTGAGCAAGTTTTCAAGTAATGG
TTTACGTCGACGCATGCGGAAGAAAGCACGGCGATCTTGTGCTGAACATG
ATCCTTCTGTTAGTGATGTACAGCGTTCTACAGAGCGGCTCCTTGAGGTT
GTATCGAAAAGCGAGACGAATACCTTGGAAAGATTCAAGTCAACGGCACG
GTTTCCGTTTGTCTCAGAAAGCGAGGAACTTGAGGACGATGTAGACAAGC
TTATTAATAACGGGTGTGATGAAATGGTAGACCAACACAAGAATGAAGTT
CAAGCAATGCTACAGTCTTTCGGTGACCTCGATATGAAGAAGAAGCCGCT
ACCAGTTCGTATTCAAGGTTCTAGAAGAAAATCTGCACCGAAGAGATGGA
CAGACCGCAAGGTCACAGAGAGAACTGTATTTCAGCTAGGAACCGGAGGG
CCGTTTTTTCCAAGAAAGAAGGAAAATCTGGGAGAAGGTGATGATATTCC
CAGTGGTTTGTTTAATAGTTCTGTGCAAGACAGTGGGTCCGTGAATCATG
AAGTAAGGTGTGGTTGTCAATCTCCTAACTCAAGGCGTCGGAACGAACTG
GTGGGGAAAGCTACAATACAATGCGGTCTCTGTGGGTATTGGAGTCATTT
GGAGTGTACCGGGCTCGCTAGAAAGGCTGTGGAGGATATCAGAGGAGCAA
GCTCTGCCACGAAAAAGCATTTTGCATGCGCTTTCTGTTTGGATGAGGCG
ACGTATCGCAGTCTCAATCATGCCACAACTCGTGCCCTTGGGAAATCCTC
GCGACGTGCGCAACCCGCTGGCTCTGCTAATAATCGGTCCGATTTGGGAG
AGGATCGGGAATGGTATTCCGAGATATCACCAGTGGTCCAAGCGGGCAGC
CAAACCAAGAAGTACAATTCACGTTCATCACGGAGATTACCGAAATCAAC
TATTCCTAGCAGCAGATGCCGCTATCGACCACGGTCTCCTTTAAGTGAGG
CTGAAATCCAAGCTCGGAACGAAAACGTCGAGTTTCTAAGATCAGGAGTT
CTCAAACCCTCTGTAGGTTTGAAAGAACGTGAGCTGATCGACAGTAAAAC
CCCTAACTTTAGCCTGTAG

protein sequence of Ggra1303.t1

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=723bp
MPVKSVSVNEEVHARRPNTCQWRAAKVLEDANQNHHRVVKLKFIGDTAVH
NIPWAHIKLFQYVKRDVLFRRTLPSRPPTRSSQKVISIDLTDLEHHEGAS
PQQIKNTRVNGRCSKTGQAEGETDPAMQLDYSSSVTSDHATKPASLKRKP
LSTDPCLASTSDLNAPLSLSDHDTAVQTASPSDDADTPQTSAEYVSTRMA
NSDKHTKSSSGNAIESPVKEVSRMYPIRRRTRRFSLEKNTVPPKKIKNNE
IIWDARPPRWEDELRKDLEKPTTLNTKTGSLLMRRRSTANGAVAIPRERH
PHRALGDIPIPRARPQLNGSLDSEYELNDEMCNLATGLTPSKRRRSSNDI
LYKDSMATNLSKFSSNGLRRRMRKKARRSCAEHDPSVSDVQRSTERLLEV
VSKSETNTLERFKSTARFPFVSESEELEDDVDKLINNGCDEMVDQHKNEV
QAMLQSFGDLDMKKKPLPVRIQGSRRKSAPKRWTDRKVTERTVFQLGTGG
PFFPRKKENLGEGDDIPSGLFNSSVQDSGSVNHEVRCGCQSPNSRRRNEL
VGKATIQCGLCGYWSHLECTGLARKAVEDIRGASSATKKHFACAFCLDEA
TYRSLNHATTRALGKSSRRAQPAGSANNRSDLGEDREWYSEISPVVQAGS
QTKKYNSRSSRRLPKSTIPSSRCRYRPRSPLSEAEIQARNENVEFLRSGV
LKPSVGLKERELIDSKTPNFSL*

mRNA from alignment at tig00000092_pilon:50850..53018+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2169bp|location=Sequence derived from alignment at tig00000092_pilon:50850..53018+ (Gracilaria gracilis GNS1m male)
ATGCCAGTGAAGTCGGTCTCGGTCAATGAGGAGGTGCACGCCCGTAGACC
AAACACCTGTCAGTGGCGAGCAGCCAAAGTCCTCGAGGATGCCAACCAAA
ATCACCACCGTGTCGTCAAGCTCAAGTTCATCGGCGATACTGCTGTTCAT
AACATTCCGTGGGCGCACATAAAGCTCTTCCAGTACGTCAAGCGCGATGT
TCTCTTCAGGAGGACGCTTCCATCACGTCCGCCCACTAGGTCTTCGCAGA
AAGTCATTTCTATCGATCTCACCGACTTGGAACATCATGAGGGGGCTTCC
CCGCAGCAGATCAAAAATACTCGAGTCAATGGTAGATGTTCGAAAACGGG
ACAGGCAGAAGGCGAAACAGACCCTGCCATGCAGCTGGATTACTCGTCTT
CTGTAACATCGGACCATGCGACAAAACCGGCGTCGTTGAAGCGAAAGCCG
CTGAGTACAGATCCTTGCTTAGCTTCAACTTCTGATTTGAACGCACCTCT
TTCACTTTCAGATCATGACACAGCTGTTCAGACTGCATCACCGTCTGATG
ATGCAGACACACCTCAAACCAGTGCAGAATATGTTTCGACCCGTATGGCC
AACAGCGACAAACACACTAAGTCTTCATCCGGAAATGCAATCGAGTCACC
AGTCAAGGAAGTGTCGAGAATGTATCCCATAAGGAGACGCACACGGCGTT
TTTCTCTTGAAAAGAACACTGTGCCACCAAAGAAGATTAAAAACAATGAA
ATCATCTGGGACGCAAGACCCCCACGTTGGGAAGACGAACTACGGAAAGA
TTTGGAAAAGCCGACAACTCTTAACACCAAGACCGGGAGCCTGCTTATGC
GTCGAAGATCTACAGCTAATGGCGCAGTAGCAATACCCCGTGAACGTCAT
CCTCATCGGGCTCTAGGTGATATTCCTATTCCACGTGCTCGCCCTCAACT
GAACGGCAGCTTGGACTCTGAATATGAATTGAATGACGAAATGTGCAACT
TAGCTACAGGTCTAACTCCGTCCAAACGACGTAGGTCTTCGAACGACATT
CTCTATAAAGACTCGATGGCGACGAATTTGAGCAAGTTTTCAAGTAATGG
TTTACGTCGACGCATGCGGAAGAAAGCACGGCGATCTTGTGCTGAACATG
ATCCTTCTGTTAGTGATGTACAGCGTTCTACAGAGCGGCTCCTTGAGGTT
GTATCGAAAAGCGAGACGAATACCTTGGAAAGATTCAAGTCAACGGCACG
GTTTCCGTTTGTCTCAGAAAGCGAGGAACTTGAGGACGATGTAGACAAGC
TTATTAATAACGGGTGTGATGAAATGGTAGACCAACACAAGAATGAAGTT
CAAGCAATGCTACAGTCTTTCGGTGACCTCGATATGAAGAAGAAGCCGCT
ACCAGTTCGTATTCAAGGTTCTAGAAGAAAATCTGCACCGAAGAGATGGA
CAGACCGCAAGGTCACAGAGAGAACTGTATTTCAGCTAGGAACCGGAGGG
CCGTTTTTTCCAAGAAAGAAGGAAAATCTGGGAGAAGGTGATGATATTCC
CAGTGGTTTGTTTAATAGTTCTGTGCAAGACAGTGGGTCCGTGAATCATG
AAGTAAGGTGTGGTTGTCAATCTCCTAACTCAAGGCGTCGGAACGAACTG
GTGGGGAAAGCTACAATACAATGCGGTCTCTGTGGGTATTGGAGTCATTT
GGAGTGTACCGGGCTCGCTAGAAAGGCTGTGGAGGATATCAGAGGAGCAA
GCTCTGCCACGAAAAAGCATTTTGCATGCGCTTTCTGTTTGGATGAGGCG
ACGTATCGCAGTCTCAATCATGCCACAACTCGTGCCCTTGGGAAATCCTC
GCGACGTGCGCAACCCGCTGGCTCTGCTAATAATCGGTCCGATTTGGGAG
AGGATCGGGAATGGTATTCCGAGATATCACCAGTGGTCCAAGCGGGCAGC
CAAACCAAGAAGTACAATTCACGTTCATCACGGAGATTACCGAAATCAAC
TATTCCTAGCAGCAGATGCCGCTATCGACCACGGTCTCCTTTAAGTGAGG
CTGAAATCCAAGCTCGGAACGAAAACGTCGAGTTTCTAAGATCAGGAGTT
CTCAAACCCTCTGTAGGTTTGAAAGAACGTGAGCTGATCGACAGTAAAAC
CCCTAACTTTAGCCTGTAG

Coding sequence (CDS) from alignment at tig00000092_pilon:50850..53018+

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2169bp|location=Sequence derived from alignment at tig00000092_pilon:50850..53018+ (Gracilaria gracilis GNS1m male)
ATGCCAGTGAAGTCGGTCTCGGTCAATGAGGAGGTGCACGCCCGTAGACC
AAACACCTGTCAGTGGCGAGCAGCCAAAGTCCTCGAGGATGCCAACCAAA
ATCACCACCGTGTCGTCAAGCTCAAGTTCATCGGCGATACTGCTGTTCAT
AACATTCCGTGGGCGCACATAAAGCTCTTCCAGTACGTCAAGCGCGATGT
TCTCTTCAGGAGGACGCTTCCATCACGTCCGCCCACTAGGTCTTCGCAGA
AAGTCATTTCTATCGATCTCACCGACTTGGAACATCATGAGGGGGCTTCC
CCGCAGCAGATCAAAAATACTCGAGTCAATGGTAGATGTTCGAAAACGGG
ACAGGCAGAAGGCGAAACAGACCCTGCCATGCAGCTGGATTACTCGTCTT
CTGTAACATCGGACCATGCGACAAAACCGGCGTCGTTGAAGCGAAAGCCG
CTGAGTACAGATCCTTGCTTAGCTTCAACTTCTGATTTGAACGCACCTCT
TTCACTTTCAGATCATGACACAGCTGTTCAGACTGCATCACCGTCTGATG
ATGCAGACACACCTCAAACCAGTGCAGAATATGTTTCGACCCGTATGGCC
AACAGCGACAAACACACTAAGTCTTCATCCGGAAATGCAATCGAGTCACC
AGTCAAGGAAGTGTCGAGAATGTATCCCATAAGGAGACGCACACGGCGTT
TTTCTCTTGAAAAGAACACTGTGCCACCAAAGAAGATTAAAAACAATGAA
ATCATCTGGGACGCAAGACCCCCACGTTGGGAAGACGAACTACGGAAAGA
TTTGGAAAAGCCGACAACTCTTAACACCAAGACCGGGAGCCTGCTTATGC
GTCGAAGATCTACAGCTAATGGCGCAGTAGCAATACCCCGTGAACGTCAT
CCTCATCGGGCTCTAGGTGATATTCCTATTCCACGTGCTCGCCCTCAACT
GAACGGCAGCTTGGACTCTGAATATGAATTGAATGACGAAATGTGCAACT
TAGCTACAGGTCTAACTCCGTCCAAACGACGTAGGTCTTCGAACGACATT
CTCTATAAAGACTCGATGGCGACGAATTTGAGCAAGTTTTCAAGTAATGG
TTTACGTCGACGCATGCGGAAGAAAGCACGGCGATCTTGTGCTGAACATG
ATCCTTCTGTTAGTGATGTACAGCGTTCTACAGAGCGGCTCCTTGAGGTT
GTATCGAAAAGCGAGACGAATACCTTGGAAAGATTCAAGTCAACGGCACG
GTTTCCGTTTGTCTCAGAAAGCGAGGAACTTGAGGACGATGTAGACAAGC
TTATTAATAACGGGTGTGATGAAATGGTAGACCAACACAAGAATGAAGTT
CAAGCAATGCTACAGTCTTTCGGTGACCTCGATATGAAGAAGAAGCCGCT
ACCAGTTCGTATTCAAGGTTCTAGAAGAAAATCTGCACCGAAGAGATGGA
CAGACCGCAAGGTCACAGAGAGAACTGTATTTCAGCTAGGAACCGGAGGG
CCGTTTTTTCCAAGAAAGAAGGAAAATCTGGGAGAAGGTGATGATATTCC
CAGTGGTTTGTTTAATAGTTCTGTGCAAGACAGTGGGTCCGTGAATCATG
AAGTAAGGTGTGGTTGTCAATCTCCTAACTCAAGGCGTCGGAACGAACTG
GTGGGGAAAGCTACAATACAATGCGGTCTCTGTGGGTATTGGAGTCATTT
GGAGTGTACCGGGCTCGCTAGAAAGGCTGTGGAGGATATCAGAGGAGCAA
GCTCTGCCACGAAAAAGCATTTTGCATGCGCTTTCTGTTTGGATGAGGCG
ACGTATCGCAGTCTCAATCATGCCACAACTCGTGCCCTTGGGAAATCCTC
GCGACGTGCGCAACCCGCTGGCTCTGCTAATAATCGGTCCGATTTGGGAG
AGGATCGGGAATGGTATTCCGAGATATCACCAGTGGTCCAAGCGGGCAGC
CAAACCAAGAAGTACAATTCACGTTCATCACGGAGATTACCGAAATCAAC
TATTCCTAGCAGCAGATGCCGCTATCGACCACGGTCTCCTTTAAGTGAGG
CTGAAATCCAAGCTCGGAACGAAAACGTCGAGTTTCTAAGATCAGGAGTT
CTCAAACCCTCTGTAGGTTTGAAAGAACGTGAGCTGATCGACAGTAAAAC
CCCTAACTTTAGCCTGTAG