Ggra1303.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1303.t1
Unique NameGgra1303.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length723
Homology
BLAST of Ggra1303.t1 vs. uniprot
Match: A0A2V3IKA6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKA6_9FLOR)

HSP 1 Score: 302 bits (774), Expect = 2.940e-89
Identity = 251/746 (33.65%), Postives = 375/746 (50.27%), Query Frame = 0
Query:    1 MPVKSVSVNEEVHARRPNTCQWRAAKVLEDANQNHHRVVKLKFIGDTAVHNIPWAHIKLFQYVKRDVLFRRTLPSRPPTRSSQKVISIDLTDLE-------HHEGASPQQIKNTRV-NGRCSKTGQAEGETDPAMQLDYSSSVTSDHATKPASLKRKPLSTDPCLASTSDLNAPLSLSDHDTAVQTASPSDDADTPQTSAEYVSTRMANSDKHTKSSSGNAIESPVKEVSRMYPIRRRTRRFSLEKNTVPPKKIKNNEIIWDARPPRWEDELRKDLEKPTTL---NTKTGSLLMRRRSTANGAVAI---PRERHPHRALGDIPIPR--ARPQLNGSLDSEYE-LNDEMCNLATGLTPSKRRRSSNDILYKDSMATNLSK-FSSNGLRRRMRKKARRSCAEHDPSVSDVQRSTERLLEVVSKSETNTLERFKSTARFPFVSESEELEDDVDKLINNGCDEMVDQHKNEVQAMLQSFGDLDMKKKPLPVRIQGSRRKSA-PKRWTDRKVTERTVFQLGTGGPFFPRKKENLGEGDDIPSGLFNSSVQDSGSVNHEVRCGCQSPNSRRRNELVGKATIQCGLCGYWSHLECTGLARKAVEDIRGASSATKKHFACAFCLDEATYRSLNHATT------RALGKSSRRAQPAGSANNRSDLGEDREWYSEISPVVQAGSQTKKYNSRSSRRLPKSTIPSSRCRYRPRSPLSEAEIQARNENVEFLRSGVLKPSVGLKERELIDSKTPNFS 721
            M  ++V +NEEV A RPNTCQWRAA+V+EDANQ  H  V++KFIGDTAV+ IPWA IKL+QY     LF R + +R    SSQK++SIDLT+ +        H GA      N++  NG        + ET P+ + +   +VT+            P    P +++ S               + AS S     P +S+    T +             A ES                      NT  P   ++NEI+W+  P    ++++   E        NT   S+L       NG   I   P ERHP + + DIPIPR   +P  +  +    E L  ++ ++   + PSKR R S DI  +  +AT L   +S+  + RR++KK R+S         ++QR T        K   +TL +F+   RFPF  E + + DDVDK +   C +MV +HKNEV+AML++  DL + KKP  ++ +  RRKSA P+ W  RK+TE+T+F+  T   + P++    G    +PS    +S Q+      ++RC C + ++         A ++C +CG+ +H++C       ++ +    SA  K F C+FC+D+AT  ++    T         G +S ++ P       S  G+D  W S ++PVV      K  N RS R   K++I  +R +YRPR+PLSE+E++AR  N++FLR+GVLK SVG +E+ELIDSKTP FS
Sbjct:    1 MSWRAVRLNEEVQACRPNTCQWRAARVMEDANQGQHSAVRVKFIGDTAVYCIPWASIKLYQYPNSGSLFSRPVVTRSKNSSSQKIVSIDLTEPDDISSYPRRHHGAPKHSTHNSQTENGHLHSPPHGKQET-PSFRHE---AVTNT-----------PRDLGPLVSARS---------------KQASTSVTVQPPPSSSNQNGTSLG------------ANESD---------------------NTAFP--CRDNEIVWEWNPIHPVEQMQTSSETGFAQHLGNTSNASVLR-----INGNTDIESKPLERHPGKGVEDIPIPRNLLKPNESKLIGHNGESLRGKVRSVNGSVRPSKRPRPSYDI--QSQLATLLPPHWSTLNVSRRLQKKQRQSHVLPSQEDPELQRGTTG--SEARKYPNDTLPKFQPITRFPFAQEHDNM-DDVDKHVKKSCADMVSEHKNEVKAMLEALDDLKLAKKPPKIQNRSGRRKSAKPRSWGHRKLTEQTIFENITDFSY-PQQ----GTVGGVPS----NSSQNPAPNPRKIRCVCGAVDADGGTG-ASHAAVRCEVCGFLTHVKCIQFEDTDLDKLGFDGSANAKRFVCSFCVDDATDCNVTKIATGDGSDPTQYGFTSGKSNPFPGCQLASAKGQD--WQSHVAPVVTVERSIKPPNLRSRR---KASIIPNRPKYRPRTPLSESEVEARALNIDFLRAGVLKRSVGAREQELIDSKTPTFS 656          
The following BLAST results are available for this feature:
BLAST of Ggra1303.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKA62.940e-8933.65Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 536..597
e-value: 0.0047
score: 26.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 522..603
e-value: 5.0E-8
score: 34.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 613..628
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 154..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..681
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 650..667
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 613..632
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 532..599

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000092_piloncontigtig00000092_pilon:50850..53018 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1303.t1Ggra1303.t1Gracilaria gracilis GNS1m malemRNAtig00000092_pilon 50850..53018 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1303.t1 ID=Ggra1303.t1|Name=Ggra1303.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=723bp
MPVKSVSVNEEVHARRPNTCQWRAAKVLEDANQNHHRVVKLKFIGDTAVH
NIPWAHIKLFQYVKRDVLFRRTLPSRPPTRSSQKVISIDLTDLEHHEGAS
PQQIKNTRVNGRCSKTGQAEGETDPAMQLDYSSSVTSDHATKPASLKRKP
LSTDPCLASTSDLNAPLSLSDHDTAVQTASPSDDADTPQTSAEYVSTRMA
NSDKHTKSSSGNAIESPVKEVSRMYPIRRRTRRFSLEKNTVPPKKIKNNE
IIWDARPPRWEDELRKDLEKPTTLNTKTGSLLMRRRSTANGAVAIPRERH
PHRALGDIPIPRARPQLNGSLDSEYELNDEMCNLATGLTPSKRRRSSNDI
LYKDSMATNLSKFSSNGLRRRMRKKARRSCAEHDPSVSDVQRSTERLLEV
VSKSETNTLERFKSTARFPFVSESEELEDDVDKLINNGCDEMVDQHKNEV
QAMLQSFGDLDMKKKPLPVRIQGSRRKSAPKRWTDRKVTERTVFQLGTGG
PFFPRKKENLGEGDDIPSGLFNSSVQDSGSVNHEVRCGCQSPNSRRRNEL
VGKATIQCGLCGYWSHLECTGLARKAVEDIRGASSATKKHFACAFCLDEA
TYRSLNHATTRALGKSSRRAQPAGSANNRSDLGEDREWYSEISPVVQAGS
QTKKYNSRSSRRLPKSTIPSSRCRYRPRSPLSEAEIQARNENVEFLRSGV
LKPSVGLKERELIDSKTPNFSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD