Ggra1299.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1299.t1
Unique NameGgra1299.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length431
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:71335..72627 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1299Ggra1299Gracilaria gracilis GNS1m malegenetig00000235_pilon 71335..72627 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1299.t1.stop1Ggra1299.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 71335..71337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1299.t1.CDS1Ggra1299.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 71335..72627 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1299.t1.exon1Ggra1299.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 71335..72627 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1299.t1.start1Ggra1299.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 72625..72627 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1299.t1Ggra1299.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 71335..72627 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1299.t1 ID=Ggra1299.t1|Name=Ggra1299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=431bp
MASVPAIKIAAAPRTMRLRNALLSPHPKRLTPQPLHVLALFSLLLLAIHH
VFQPRFAPNRPHLVTLTHGGLGNQIYFLLESLLLSRHAHLVFVPPTVPQR
NIPGLPHQARDQPAHLFWNLATMNHFTDVAHPLPDACRRGYTAVYMARRG
SGPIAPSRRLIRTACLYSGGSRPQETEEQCGQRALDAATLHKRYLNFTAE
GDHSLIHELRNLQRGCVVVDGHSFSHSGTLAQEYLHSALHYVQASPYIAN
MLSKWQRKRMTVLHIRYDEYLCDKDRPYLCIRRTLSTNNNDTVVYVQPRQ
FVAAVSQLMRSKHSSHIYIAASPYTPPSMLSALDYLFSNHTNVLPRVSGL
DETTENFLERELAIQAHVFVGDFASTWSGTVYYKRRTLGKATEWSCKLAN
KCDDLAHYRYNERLETPQWFEKQHRFSPSG*
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spliced messenger RNA

>Ggra1299.t1 ID=Ggra1299.t1|Name=Ggra1299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000235_pilon:71335..72627- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCGTTCCGGCCATAAAGATCGCTGCGGCGCCGCGCACAATGCG
TCTGCGAAACGCCTTGCTCTCCCCGCACCCCAAGCGACTCACTCCGCAGC
CGCTTCACGTTCTCGCCCTCTTCTCGCTCCTTCTGCTCGCCATCCACCAC
GTCTTTCAGCCCCGCTTCGCTCCAAACCGACCGCATCTCGTCACCCTCAC
GCACGGCGGGCTCGGCAACCAGATCTACTTCTTGCTGGAGTCGCTCTTGT
TGTCGCGTCATGCCCACCTTGTGTTCGTGCCCCCCACGGTTCCGCAGCGC
AATATACCGGGACTGCCGCATCAAGCACGCGACCAGCCTGCGCATCTGTT
CTGGAATCTTGCCACAATGAACCACTTTACCGACGTTGCTCACCCGCTTC
CCGACGCTTGTCGACGCGGTTATACTGCCGTTTATATGGCTCGCAGAGGT
TCCGGCCCCATCGCTCCTTCACGCCGACTTATTCGAACTGCCTGCTTGTA
CTCTGGCGGATCCCGCCCGCAAGAGACCGAGGAGCAATGTGGCCAACGTG
CCCTCGACGCCGCCACCCTTCACAAACGCTATCTCAACTTTACTGCGGAG
GGCGATCACTCTTTGATCCACGAGCTTCGCAATTTGCAACGCGGCTGCGT
CGTTGTCGACGGCCATTCGTTTTCTCACTCTGGCACTTTGGCTCAGGAGT
ATCTTCACAGCGCGTTGCATTATGTTCAAGCCTCGCCTTACATTGCCAAC
ATGCTGTCAAAGTGGCAGAGAAAGCGGATGACCGTTTTGCATATCAGATA
CGATGAATACCTTTGCGACAAAGATAGACCGTACCTTTGTATCAGACGCA
CATTGTCCACCAATAACAACGATACCGTCGTGTACGTCCAGCCACGGCAG
TTTGTTGCAGCCGTTTCACAGCTCATGCGTTCCAAGCACAGTTCGCACAT
TTACATTGCTGCGAGTCCTTATACCCCACCTTCCATGCTGTCCGCTTTGG
ACTACTTGTTTAGCAACCACACAAACGTCCTTCCTCGCGTGTCTGGATTG
GACGAGACCACGGAAAACTTCTTGGAACGAGAATTGGCAATTCAAGCTCA
CGTGTTTGTTGGCGATTTTGCTAGCACTTGGTCGGGCACTGTATACTACA
AGCGTCGCACGTTGGGAAAAGCTACCGAATGGAGTTGCAAATTGGCCAAC
AAATGTGACGATCTGGCGCATTATCGTTACAATGAGCGCCTCGAAACGCC
GCAATGGTTCGAGAAGCAGCACAGATTCTCCCCGAGTGGGTAA
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protein sequence of Ggra1299.t1

>Ggra1299.t1 ID=Ggra1299.t1|Name=Ggra1299.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=431bp
MASVPAIKIAAAPRTMRLRNALLSPHPKRLTPQPLHVLALFSLLLLAIHH
VFQPRFAPNRPHLVTLTHGGLGNQIYFLLESLLLSRHAHLVFVPPTVPQR
NIPGLPHQARDQPAHLFWNLATMNHFTDVAHPLPDACRRGYTAVYMARRG
SGPIAPSRRLIRTACLYSGGSRPQETEEQCGQRALDAATLHKRYLNFTAE
GDHSLIHELRNLQRGCVVVDGHSFSHSGTLAQEYLHSALHYVQASPYIAN
MLSKWQRKRMTVLHIRYDEYLCDKDRPYLCIRRTLSTNNNDTVVYVQPRQ
FVAAVSQLMRSKHSSHIYIAASPYTPPSMLSALDYLFSNHTNVLPRVSGL
DETTENFLERELAIQAHVFVGDFASTWSGTVYYKRRTLGKATEWSCKLAN
KCDDLAHYRYNERLETPQWFEKQHRFSPSG*
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mRNA from alignment at tig00000235_pilon:71335..72627-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1299.t1 ID=Ggra1299.t1|Name=Ggra1299.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1293bp|location=Sequence derived from alignment at tig00000235_pilon:71335..72627- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTTCCGGCCATAAAGATCGCTGCGGCGCCGCGCACAATGCG
TCTGCGAAACGCCTTGCTCTCCCCGCACCCCAAGCGACTCACTCCGCAGC
CGCTTCACGTTCTCGCCCTCTTCTCGCTCCTTCTGCTCGCCATCCACCAC
GTCTTTCAGCCCCGCTTCGCTCCAAACCGACCGCATCTCGTCACCCTCAC
GCACGGCGGGCTCGGCAACCAGATCTACTTCTTGCTGGAGTCGCTCTTGT
TGTCGCGTCATGCCCACCTTGTGTTCGTGCCCCCCACGGTTCCGCAGCGC
AATATACCGGGACTGCCGCATCAAGCACGCGACCAGCCTGCGCATCTGTT
CTGGAATCTTGCCACAATGAACCACTTTACCGACGTTGCTCACCCGCTTC
CCGACGCTTGTCGACGCGGTTATACTGCCGTTTATATGGCTCGCAGAGGT
TCCGGCCCCATCGCTCCTTCACGCCGACTTATTCGAACTGCCTGCTTGTA
CTCTGGCGGATCCCGCCCGCAAGAGACCGAGGAGCAATGTGGCCAACGTG
CCCTCGACGCCGCCACCCTTCACAAACGCTATCTCAACTTTACTGCGGAG
GGCGATCACTCTTTGATCCACGAGCTTCGCAATTTGCAACGCGGCTGCGT
CGTTGTCGACGGCCATTCGTTTTCTCACTCTGGCACTTTGGCTCAGGAGT
ATCTTCACAGCGCGTTGCATTATGTTCAAGCCTCGCCTTACATTGCCAAC
ATGCTGTCAAAGTGGCAGAGAAAGCGGATGACCGTTTTGCATATCAGATA
CGATGAATACCTTTGCGACAAAGATAGACCGTACCTTTGTATCAGACGCA
CATTGTCCACCAATAACAACGATACCGTCGTGTACGTCCAGCCACGGCAG
TTTGTTGCAGCCGTTTCACAGCTCATGCGTTCCAAGCACAGTTCGCACAT
TTACATTGCTGCGAGTCCTTATACCCCACCTTCCATGCTGTCCGCTTTGG
ACTACTTGTTTAGCAACCACACAAACGTCCTTCCTCGCGTGTCTGGATTG
GACGAGACCACGGAAAACTTCTTGGAACGAGAATTGGCAATTCAAGCTCA
CGTGTTTGTTGGCGATTTTGCTAGCACTTGGTCGGGCACTGTATACTACA
AGCGTCGCACGTTGGGAAAAGCTACCGAATGGAGTTGCAAATTGGCCAAC
AAATGTGACGATCTGGCGCATTATCGTTACAATGAGCGCCTCGAAACGCC
GCAATGGTTCGAGAAGCAGCACAGATTCTCCCCGAGTGGGTAA
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Coding sequence (CDS) from alignment at tig00000235_pilon:71335..72627-

>Ggra1299.t1 ID=Ggra1299.t1|Name=Ggra1299.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1293bp|location=Sequence derived from alignment at tig00000235_pilon:71335..72627- (Gracilaria gracilis GNS1m male)
ATGGCTTCCGTTCCGGCCATAAAGATCGCTGCGGCGCCGCGCACAATGCG
TCTGCGAAACGCCTTGCTCTCCCCGCACCCCAAGCGACTCACTCCGCAGC
CGCTTCACGTTCTCGCCCTCTTCTCGCTCCTTCTGCTCGCCATCCACCAC
GTCTTTCAGCCCCGCTTCGCTCCAAACCGACCGCATCTCGTCACCCTCAC
GCACGGCGGGCTCGGCAACCAGATCTACTTCTTGCTGGAGTCGCTCTTGT
TGTCGCGTCATGCCCACCTTGTGTTCGTGCCCCCCACGGTTCCGCAGCGC
AATATACCGGGACTGCCGCATCAAGCACGCGACCAGCCTGCGCATCTGTT
CTGGAATCTTGCCACAATGAACCACTTTACCGACGTTGCTCACCCGCTTC
CCGACGCTTGTCGACGCGGTTATACTGCCGTTTATATGGCTCGCAGAGGT
TCCGGCCCCATCGCTCCTTCACGCCGACTTATTCGAACTGCCTGCTTGTA
CTCTGGCGGATCCCGCCCGCAAGAGACCGAGGAGCAATGTGGCCAACGTG
CCCTCGACGCCGCCACCCTTCACAAACGCTATCTCAACTTTACTGCGGAG
GGCGATCACTCTTTGATCCACGAGCTTCGCAATTTGCAACGCGGCTGCGT
CGTTGTCGACGGCCATTCGTTTTCTCACTCTGGCACTTTGGCTCAGGAGT
ATCTTCACAGCGCGTTGCATTATGTTCAAGCCTCGCCTTACATTGCCAAC
ATGCTGTCAAAGTGGCAGAGAAAGCGGATGACCGTTTTGCATATCAGATA
CGATGAATACCTTTGCGACAAAGATAGACCGTACCTTTGTATCAGACGCA
CATTGTCCACCAATAACAACGATACCGTCGTGTACGTCCAGCCACGGCAG
TTTGTTGCAGCCGTTTCACAGCTCATGCGTTCCAAGCACAGTTCGCACAT
TTACATTGCTGCGAGTCCTTATACCCCACCTTCCATGCTGTCCGCTTTGG
ACTACTTGTTTAGCAACCACACAAACGTCCTTCCTCGCGTGTCTGGATTG
GACGAGACCACGGAAAACTTCTTGGAACGAGAATTGGCAATTCAAGCTCA
CGTGTTTGTTGGCGATTTTGCTAGCACTTGGTCGGGCACTGTATACTACA
AGCGTCGCACGTTGGGAAAAGCTACCGAATGGAGTTGCAAATTGGCCAAC
AAATGTGACGATCTGGCGCATTATCGTTACAATGAGCGCCTCGAAACGCC
GCAATGGTTCGAGAAGCAGCACAGATTCTCCCCGAGTGGGTAA
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