Ggra1297.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1297.t1
Unique NameGgra1297.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length347
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:67970..69010 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1297Ggra1297Gracilaria gracilis GNS1m malegenetig00000235_pilon 67970..69010 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1297.t1.stop1Ggra1297.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 67970..67972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1297.t1.CDS1Ggra1297.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 67970..69010 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1297.t1.exon1Ggra1297.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 67970..69010 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1297.t1.start1Ggra1297.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 69008..69010 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1297.t1Ggra1297.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 67970..69010 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1297.t1 ID=Ggra1297.t1|Name=Ggra1297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=347bp
MSRSLLVLALSALFALAYSQSLQIYQASVPGPISSWPAGPALSGDVTLCQ
DDLPSPFTVVCFPPTGASISYAKFYVNGQMVRTERMAPYVLSGDTSRSGA
FPWTNPPAVSELTCRLSTGQTVTSTIRFSCGDAAPATAPPATMPATTTMA
QTTTVAPPTMPATQVMPRSGGGSGCVYLPATGFDTSDGDWKAGGGGMEYR
MNDPSIKVDPIGRGTMTYSFTAPVTGRYALTLDMLTSDGTEHNDVWIEID
GVPFTLVKKNSSRDGKSGMNKAYHNRNGRSKIVYTVDFNAHVFSTKGDLQ
AGKSYTVKVGGRSTKVRVYAIILFPCAEFGCAPGTAWNSAMNQCSA*
back to top

spliced messenger RNA

>Ggra1297.t1 ID=Ggra1297.t1|Name=Ggra1297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000235_pilon:67970..69010- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGCTCGCTTTTGGTGCTCGCGCTGAGCGCGCTCTTCGCACTGGC
GTACAGCCAGTCGCTTCAGATCTACCAAGCCTCTGTGCCGGGTCCCATCT
CTTCGTGGCCGGCTGGTCCCGCTCTGTCCGGCGACGTCACTCTCTGCCAG
GATGACTTGCCGTCGCCCTTCACCGTCGTCTGCTTCCCGCCCACCGGCGC
ATCTATCTCCTACGCCAAGTTCTATGTCAACGGACAGATGGTTCGAACTG
AGAGAATGGCTCCGTACGTGCTCTCTGGTGATACTTCTCGCTCGGGCGCC
TTCCCGTGGACAAACCCGCCCGCCGTCAGTGAGCTTACTTGCAGACTCAG
CACCGGCCAAACTGTCACCTCTACCATCCGCTTCTCATGCGGTGACGCTG
CTCCCGCCACTGCTCCGCCGGCTACAATGCCTGCTACCACCACCATGGCT
CAGACTACTACCGTCGCTCCGCCCACTATGCCCGCTACGCAGGTAATGCC
GCGTAGCGGTGGAGGCTCTGGTTGCGTGTATCTGCCGGCCACCGGCTTTG
ACACCTCGGATGGAGATTGGAAGGCAGGTGGCGGTGGTATGGAGTACAGG
ATGAACGACCCCTCCATCAAGGTTGACCCAATTGGAAGAGGCACTATGAC
GTACTCGTTCACGGCTCCTGTGACGGGCCGCTATGCTCTCACCCTGGACA
TGCTAACCAGCGATGGCACTGAGCATAATGATGTGTGGATTGAGATTGAC
GGTGTTCCATTCACTCTTGTGAAGAAGAATTCGTCTCGCGATGGAAAGTC
TGGTATGAACAAGGCGTATCATAACAGGAATGGACGTTCGAAGATTGTGT
ACACAGTTGATTTTAACGCCCATGTGTTCTCTACGAAGGGTGATCTACAG
GCTGGCAAGTCGTACACCGTGAAGGTTGGTGGACGAAGCACCAAGGTTAG
AGTGTATGCGATTATTCTGTTCCCTTGTGCGGAGTTCGGGTGTGCTCCTG
GCACAGCGTGGAACTCGGCTATGAATCAGTGTTCGGCGTAA
back to top

protein sequence of Ggra1297.t1

>Ggra1297.t1 ID=Ggra1297.t1|Name=Ggra1297.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=347bp
MSRSLLVLALSALFALAYSQSLQIYQASVPGPISSWPAGPALSGDVTLCQ
DDLPSPFTVVCFPPTGASISYAKFYVNGQMVRTERMAPYVLSGDTSRSGA
FPWTNPPAVSELTCRLSTGQTVTSTIRFSCGDAAPATAPPATMPATTTMA
QTTTVAPPTMPATQVMPRSGGGSGCVYLPATGFDTSDGDWKAGGGGMEYR
MNDPSIKVDPIGRGTMTYSFTAPVTGRYALTLDMLTSDGTEHNDVWIEID
GVPFTLVKKNSSRDGKSGMNKAYHNRNGRSKIVYTVDFNAHVFSTKGDLQ
AGKSYTVKVGGRSTKVRVYAIILFPCAEFGCAPGTAWNSAMNQCSA*
back to top

mRNA from alignment at tig00000235_pilon:67970..69010-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1297.t1 ID=Ggra1297.t1|Name=Ggra1297.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1041bp|location=Sequence derived from alignment at tig00000235_pilon:67970..69010- (Gracilaria gracilis GNS1m male)
ATGTCTCGCTCGCTTTTGGTGCTCGCGCTGAGCGCGCTCTTCGCACTGGC
GTACAGCCAGTCGCTTCAGATCTACCAAGCCTCTGTGCCGGGTCCCATCT
CTTCGTGGCCGGCTGGTCCCGCTCTGTCCGGCGACGTCACTCTCTGCCAG
GATGACTTGCCGTCGCCCTTCACCGTCGTCTGCTTCCCGCCCACCGGCGC
ATCTATCTCCTACGCCAAGTTCTATGTCAACGGACAGATGGTTCGAACTG
AGAGAATGGCTCCGTACGTGCTCTCTGGTGATACTTCTCGCTCGGGCGCC
TTCCCGTGGACAAACCCGCCCGCCGTCAGTGAGCTTACTTGCAGACTCAG
CACCGGCCAAACTGTCACCTCTACCATCCGCTTCTCATGCGGTGACGCTG
CTCCCGCCACTGCTCCGCCGGCTACAATGCCTGCTACCACCACCATGGCT
CAGACTACTACCGTCGCTCCGCCCACTATGCCCGCTACGCAGGTAATGCC
GCGTAGCGGTGGAGGCTCTGGTTGCGTGTATCTGCCGGCCACCGGCTTTG
ACACCTCGGATGGAGATTGGAAGGCAGGTGGCGGTGGTATGGAGTACAGG
ATGAACGACCCCTCCATCAAGGTTGACCCAATTGGAAGAGGCACTATGAC
GTACTCGTTCACGGCTCCTGTGACGGGCCGCTATGCTCTCACCCTGGACA
TGCTAACCAGCGATGGCACTGAGCATAATGATGTGTGGATTGAGATTGAC
GGTGTTCCATTCACTCTTGTGAAGAAGAATTCGTCTCGCGATGGAAAGTC
TGGTATGAACAAGGCGTATCATAACAGGAATGGACGTTCGAAGATTGTGT
ACACAGTTGATTTTAACGCCCATGTGTTCTCTACGAAGGGTGATCTACAG
GCTGGCAAGTCGTACACCGTGAAGGTTGGTGGACGAAGCACCAAGGTTAG
AGTGTATGCGATTATTCTGTTCCCTTGTGCGGAGTTCGGGTGTGCTCCTG
GCACAGCGTGGAACTCGGCTATGAATCAGTGTTCGGCGTAA
back to top

Coding sequence (CDS) from alignment at tig00000235_pilon:67970..69010-

>Ggra1297.t1 ID=Ggra1297.t1|Name=Ggra1297.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1041bp|location=Sequence derived from alignment at tig00000235_pilon:67970..69010- (Gracilaria gracilis GNS1m male)
ATGTCTCGCTCGCTTTTGGTGCTCGCGCTGAGCGCGCTCTTCGCACTGGC
GTACAGCCAGTCGCTTCAGATCTACCAAGCCTCTGTGCCGGGTCCCATCT
CTTCGTGGCCGGCTGGTCCCGCTCTGTCCGGCGACGTCACTCTCTGCCAG
GATGACTTGCCGTCGCCCTTCACCGTCGTCTGCTTCCCGCCCACCGGCGC
ATCTATCTCCTACGCCAAGTTCTATGTCAACGGACAGATGGTTCGAACTG
AGAGAATGGCTCCGTACGTGCTCTCTGGTGATACTTCTCGCTCGGGCGCC
TTCCCGTGGACAAACCCGCCCGCCGTCAGTGAGCTTACTTGCAGACTCAG
CACCGGCCAAACTGTCACCTCTACCATCCGCTTCTCATGCGGTGACGCTG
CTCCCGCCACTGCTCCGCCGGCTACAATGCCTGCTACCACCACCATGGCT
CAGACTACTACCGTCGCTCCGCCCACTATGCCCGCTACGCAGGTAATGCC
GCGTAGCGGTGGAGGCTCTGGTTGCGTGTATCTGCCGGCCACCGGCTTTG
ACACCTCGGATGGAGATTGGAAGGCAGGTGGCGGTGGTATGGAGTACAGG
ATGAACGACCCCTCCATCAAGGTTGACCCAATTGGAAGAGGCACTATGAC
GTACTCGTTCACGGCTCCTGTGACGGGCCGCTATGCTCTCACCCTGGACA
TGCTAACCAGCGATGGCACTGAGCATAATGATGTGTGGATTGAGATTGAC
GGTGTTCCATTCACTCTTGTGAAGAAGAATTCGTCTCGCGATGGAAAGTC
TGGTATGAACAAGGCGTATCATAACAGGAATGGACGTTCGAAGATTGTGT
ACACAGTTGATTTTAACGCCCATGTGTTCTCTACGAAGGGTGATCTACAG
GCTGGCAAGTCGTACACCGTGAAGGTTGGTGGACGAAGCACCAAGGTTAG
AGTGTATGCGATTATTCTGTTCCCTTGTGCGGAGTTCGGGTGTGCTCCTG
GCACAGCGTGGAACTCGGCTATGAATCAGTGTTCGGCGTAA
back to top