Ggra1295.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1295.t1
Unique NameGgra1295.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:63288..63881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog518766.Rmar_1610
Preferred namesodC
PFAMsSod_Cu
Max annot lvl976|Bacteroidetes
KEGG koko:K04565
KEGG Pathwayko04146,ko04213,ko05014,ko05016,ko05020,map04146,map04213,map05014,map05016,map05020
Evalue9.36e-33
EggNOG OGsCOG2032@1|root,COG2032@2|Bacteria,4NM88@976|Bacteroidetes
EC1.15.1.1
DescriptionDestroys radicals which are normally produced within the cells and which are toxic to biological systems
COG categoryP
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1295Ggra1295Gracilaria gracilis GNS1m malegenetig00000235_pilon 63288..63881 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1.stop1Ggra1295.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 63288..63290 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1.CDS1Ggra1295.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 63288..63881 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1.exon1Ggra1295.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 63288..63881 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1.start1Ggra1295.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 63879..63881 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1Ggra1295.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 63288..63881 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=198bp
MSTNMFSFIFLVCLLSLTQARPIFWKKPCLSQPSLTCHFIPTTGNNVTGT
VHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKS
AGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKL
GGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANPDFLPQSS*
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spliced messenger RNA

>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000235_pilon:63288..63881- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACCAACATGTTTTCGTTCATCTTTCTCGTCTGCCTGCTCTCTCT
CACTCAAGCACGCCCCATCTTTTGGAAGAAACCATGTCTTTCGCAACCGA
GCTTGACATGCCATTTTATTCCCACCACCGGCAATAATGTCACAGGAACC
GTGCACTTCAGCCCGTTCTTCATTCGCCAAACAAAGTCGAAGAACCGCTG
TTTCGTGCGAATCACCGCCGCCCTCACCGGACTCACTCCCGGCGCGCACG
GTTTCCACATCCATACCTACGGCGACATCCAATCGCCAGACGGCAAGTCC
GCCGGTGGACACTTCACCGATCCGTCTGGAAACGATCTTCCGCACGCTCT
ACCCGGTGAATACCCGCGCCATTGGGGCGATTTCGGCTCCATCGTTGCAG
AAGATGACGGCACCGCCGCTTACGATCGCATTGACTACATAGTTAAACTG
GGAGGAATCACTGGCAGGGGCATGATCGTGCATGCTATGGAGGACATGGG
GGGTGAATCTCAGCCGTCCGGCGCTGCTGGTCCTCGCCAGGCTCGGTGTG
TGATCGGCTTTGCCAACCCTGACTTTTTGCCGCAATCGTCGTAA
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protein sequence of Ggra1295.t1

>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MSTNMFSFIFLVCLLSLTQARPIFWKKPCLSQPSLTCHFIPTTGNNVTGT
VHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKS
AGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKL
GGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANPDFLPQSS*
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mRNA from alignment at tig00000235_pilon:63288..63881-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000235_pilon:63288..63881- (Gracilaria gracilis GNS1m male)
ATGTCTACCAACATGTTTTCGTTCATCTTTCTCGTCTGCCTGCTCTCTCT
CACTCAAGCACGCCCCATCTTTTGGAAGAAACCATGTCTTTCGCAACCGA
GCTTGACATGCCATTTTATTCCCACCACCGGCAATAATGTCACAGGAACC
GTGCACTTCAGCCCGTTCTTCATTCGCCAAACAAAGTCGAAGAACCGCTG
TTTCGTGCGAATCACCGCCGCCCTCACCGGACTCACTCCCGGCGCGCACG
GTTTCCACATCCATACCTACGGCGACATCCAATCGCCAGACGGCAAGTCC
GCCGGTGGACACTTCACCGATCCGTCTGGAAACGATCTTCCGCACGCTCT
ACCCGGTGAATACCCGCGCCATTGGGGCGATTTCGGCTCCATCGTTGCAG
AAGATGACGGCACCGCCGCTTACGATCGCATTGACTACATAGTTAAACTG
GGAGGAATCACTGGCAGGGGCATGATCGTGCATGCTATGGAGGACATGGG
GGGTGAATCTCAGCCGTCCGGCGCTGCTGGTCCTCGCCAGGCTCGGTGTG
TGATCGGCTTTGCCAACCCTGACTTTTTGCCGCAATCGTCGTAA
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Coding sequence (CDS) from alignment at tig00000235_pilon:63288..63881-

>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000235_pilon:63288..63881- (Gracilaria gracilis GNS1m male)
ATGTCTACCAACATGTTTTCGTTCATCTTTCTCGTCTGCCTGCTCTCTCT
CACTCAAGCACGCCCCATCTTTTGGAAGAAACCATGTCTTTCGCAACCGA
GCTTGACATGCCATTTTATTCCCACCACCGGCAATAATGTCACAGGAACC
GTGCACTTCAGCCCGTTCTTCATTCGCCAAACAAAGTCGAAGAACCGCTG
TTTCGTGCGAATCACCGCCGCCCTCACCGGACTCACTCCCGGCGCGCACG
GTTTCCACATCCATACCTACGGCGACATCCAATCGCCAGACGGCAAGTCC
GCCGGTGGACACTTCACCGATCCGTCTGGAAACGATCTTCCGCACGCTCT
ACCCGGTGAATACCCGCGCCATTGGGGCGATTTCGGCTCCATCGTTGCAG
AAGATGACGGCACCGCCGCTTACGATCGCATTGACTACATAGTTAAACTG
GGAGGAATCACTGGCAGGGGCATGATCGTGCATGCTATGGAGGACATGGG
GGGTGAATCTCAGCCGTCCGGCGCTGCTGGTCCTCGCCAGGCTCGGTGTG
TGATCGGCTTTGCCAACCCTGACTTTTTGCCGCAATCGTCGTAA
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