Ggra1295.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1295.t1
Unique NameGgra1295.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length198
Homology
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A2V3IQ98 (Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ98_9FLOR)

HSP 1 Score: 284 bits (726), Expect = 3.500e-95
Identity = 132/197 (67.01%), Postives = 155/197 (78.68%), Query Frame = 0
Query:    1 MSTNMFSFIFLVCLLSLTQARPIFWKKPCLSQPSLTCHFIPTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANPDFLPQSS 197
            MS +      L  LLS + A P +WKKPCLSQPSLTC+F PT G+NVTG+V FSP F+R+ +S+NRCFVRITA L  L+PG HGFHIHTYGDI+S DGKS GGHF++PSG    HALPG++PRHWGDFGS+ A  DGTA YDR+DYI+KL GI GRGMIVHA+ED G E+QPSG AG RQARCVIG ANPD++   S
Sbjct:    1 MSISTLPLFLLAVLLSCSAASPFYWKKPCLSQPSLTCYFTPTAGHNVTGSVQFSPLFMRKARSRNRCFVRITAKLNNLSPGYHGFHIHTYGDIRSSDGKSTGGHFSNPSGIARQHALPGDWPRHWGDFGSLEAAGDGTATYDRVDYIIKLRGIVGRGMIVHALEDKGKEAQPSGGAGSRQARCVIGIANPDYMANMS 197          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A2V3IPW2 (Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPW2_9FLOR)

HSP 1 Score: 188 bits (478), Expect = 3.410e-57
Identity = 86/171 (50.29%), Postives = 115/171 (67.25%), Query Frame = 0
Query:   22 PIFWKKPCLSQPSLTCHFIPTTGNNVTGTVHFSPFFIRQTKSKNR--CFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANP 190
            P F +  C + P+L C+  PT GN V+GTV+ +P + +++       C+ R+TA++ GL    HGFH HTYGD+ S DGKS GGHFT+P+G D  H  PG+  RHWGDFG++    DG A YDRID +++LGG+ GR + +HA +D G E QPSG AG R A CVIG+ANP
Sbjct:   43 PSFSESTCSALPTLICNVQPTDGNQVSGTVYLTPIWSQRSADSQSFACYTRVTASIAGLPGPKHGFHAHTYGDLSSADGKSTGGHFTNPAGTDAQHGYPGDATRHWGDFGNLHVGADGIAEYDRIDDVIRLGGMVGRSITIHAEDDKGVEEQPSGGAGSRVAYCVIGYANP 213          
BLAST of Ggra1295.t1 vs. uniprot
Match: R7QQ00 (Potential copper-zinc superoxide dismutase, CuZn SOD1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ00_CHOCR)

HSP 1 Score: 177 bits (449), Expect = 4.950e-53
Identity = 80/180 (44.44%), Postives = 118/180 (65.56%), Query Frame = 0
Query:   22 PIFWKKPCLSQPSLTCHFIPTTGNNVTGTVHFSPFFIRQTKSKN----RCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANPDFLPQSS 197
            P+F ++ C + P+L C   PT G +V G V+F+P + R+   +      C+VRI AA+ GLT   HGFH+HTYGD+   DG S GGHFT+ +G+++ H LP +  RHWGD G+++ +  G A YDR+D +V+LG + GRG+ +H  +D G   QP+GA+G R   CVIG+ANP+ +  +S
Sbjct:   22 PLFTQEGCSNLPTLVCTVQPTDGYSVEGVVYFTPAWRRRGVGEQPDLFTCYVRIMAAVAGLTNPQHGFHVHTYGDVSVSDGSSTGGHFTNVAGDEIEHGLPDDEIRHWGDLGNLINDGKGNAEYDRVDKVVRLGALVGRGITIHEDQDAGSSEQPTGASGTRIGFCVIGYANPEVIASAS 201          
BLAST of Ggra1295.t1 vs. uniprot
Match: R7QRY5 (Potential copper-zinc superoxide dismutase, CuZn SOD2 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRY5_CHOCR)

HSP 1 Score: 167 bits (422), Expect = 8.550e-48
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 0
Query:   26 KKPCLSQPSLTCHFIPTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFAN 189
            +K CL+   L C+ + T G N TG V F P FI   +    C  R+ A L GL+PG HGFHIHTYGDI+  DG S GGHFT+  G+DLPH       RH GD  +++A  +G A Y R D +++LG I GRG+ +H   DMG  SQPSGAAG R   CVIG  +
Sbjct:   40 RKRCLNSLPLVCNVVATKGYNCTGYVKFDPVFIMNRRGMPSCHARVRANLKGLSPGRHGFHIHTYGDIRGLDGSSTGGHFTNVKGDDLPHGYASSPARHMGDLNNVMARANGEAKYSREDNVIRLGAIRGRGITIHQDRDMGPGSQPSGAAGDRVGTCVIGVVD 203          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A5M4APY4 (Superoxide dismutase [Cu-Zn] n=2 Tax=Prolixibacter sp. SD074 TaxID=2652391 RepID=A0A5M4APY4_9BACT)

HSP 1 Score: 130 bits (327), Expect = 6.930e-35
Identity = 80/167 (47.90%), Postives = 97/167 (58.08%), Query Frame = 0
Query:   30 LSQPSLT---CHFIPTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGG---ITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANP 190
            ++ P +T   C   PT GN+VTGTV F+         K    + + A + GLTPG HGFH+H YGDI SPDGKSAGGHF   + N   H  P    RH GD G+I    D T  Y R+D +VKL G   + GR +IVH+ ED    SQP+GAAGPR A  VIG A P
Sbjct:   28 MATPEVTKAVCVLKPTEGNDVTGTVTFT---------KVDGGIEVVADVKGLTPGKHGFHVHEYGDISSPDGKSAGGHFNPENVN---HGGPDAAVRHVGDLGNIEVGADSTGHYQRVDKMVKLNGPHSVIGRAIIVHSGED-DLTSQPTGAAGPRVAEGVIGIARP 181          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A7Y3DCA2 (Superoxide dismutase family protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7Y3DCA2_9DELT)

HSP 1 Score: 126 bits (316), Expect = 3.600e-33
Identity = 74/152 (48.68%), Postives = 93/152 (61.18%), Query Frame = 0
Query:   41 PTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGG---ITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFAN 189
            PT G+   G V F+         +    VR+ A  TGLTPG HGFH+H +GD+   DGKSAGGHF DP G +  HALP   PRH GD G++ A+  G A Y+R+D ++   G   I GRG+IVHA+ED GG  QP+G AG R A  VIG A+
Sbjct:   44 PTEGSQARGIVTFT---------RVADGVRVEADFTGLTPGKHGFHVHQWGDVSGSDGKSAGGHF-DPHGAE--HALPAGEPRHVGDLGNLEADASGAARYERVDSLLAFRGTNSIVGRGLIVHALEDDGG--QPTGNAGARVAMGVIGIAD 181          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A523P8M0 (Superoxide dismutase family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523P8M0_9BACT)

HSP 1 Score: 124 bits (311), Expect = 1.920e-32
Identity = 75/152 (49.34%), Postives = 92/152 (60.53%), Query Frame = 0
Query:   40 IPTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGG---ITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFA 188
            +PT G+  +GTV F+         +    VRI A ++GL PG HGFH+H +GD  +PDGKSAGGHF  P G D  HALP    RH GD G++ A  DG A YDR+D  + L G   I GRG+I+HA  D GG  QP+G AG R A  VIG A
Sbjct:   41 LPTEGSGASGTVTFT---------RTEVGVRIQADISGLAPGDHGFHVHQWGDASAPDGKSAGGHFN-PHGTD--HALPEAAVRHVGDLGNLHAGADGRAVYDRVDTGLTLDGPNSIVGRGLIIHAKLDDGG--QPTGNAGARVAIGVIGIA 178          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A3M1JMV2 (Superoxide dismutase family protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A3M1JMV2_9BACT)

HSP 1 Score: 123 bits (309), Expect = 2.580e-32
Identity = 81/153 (52.94%), Postives = 93/153 (60.78%), Query Frame = 0
Query:   41 PTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYP---RHWGDFGSIVAEDDGTAAYDRIDYIVKLGG---ITGRGMIVHA-MEDMGGESQPSGAAGPRQARCVIG 186
            PT G +V GTV F P        K    VR+ A LTGLTPG HGFHIHTYGD  SPDG SAGGHF     +  PH  P E P   RH GD G+I+A +DG A  DRID ++   G   I GR ++VHA  +D+   SQPSGAAGPR A  VIG
Sbjct:   30 PTEGYHVRGTVRFLP------AEKG---VRVIADLTGLTPGLHGFHIHTYGDCSSPDGTSAGGHFNP---DHTPHGKP-ESPAAKRHVGDLGNILAGEDGRAHLDRIDPLLSFSGDHSIIGRAVVVHAGPDDL--TSQPSGAAGPRVACGVIG 167          
BLAST of Ggra1295.t1 vs. uniprot
Match: A0A3M1XPC1 (Superoxide dismutase [Cu-Zn] n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1XPC1_9BACT)

HSP 1 Score: 122 bits (307), Expect = 8.530e-32
Identity = 75/153 (49.02%), Postives = 90/153 (58.82%), Query Frame = 0
Query:   41 PTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKLGG---ITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANP 190
            PT GNNV G V F               V ITA +TGL PG HGFHIH YGD  SPDGKSAGGHF  P+G    H  P    RH GD G+++A+++G A Y R+D ++KL G   I GRG+I+H   D    SQP+G AG R A  VIG + P
Sbjct:   49 PTEGNNVRGVVSFVIL---------EGGVMITADVTGLPPGPHGFHIHQYGDCTSPDGKSAGGHFN-PTGEK--HGAPDSLHRHVGDLGNLIADENGEAHYKRLDTVLKLVGPTSIIGRGIIIHEKAD-DFTSQPTGNAGARLACGVIGISKP 188          
BLAST of Ggra1295.t1 vs. uniprot
Match: V5KVA9 (Cu-Zn SOD n=1 Tax=Neoporphyra haitanensis TaxID=1262161 RepID=V5KVA9_NEOHI)

HSP 1 Score: 117 bits (292), Expect = 3.130e-29
Identity = 69/161 (42.86%), Postives = 94/161 (58.39%), Query Frame = 0
Query:   33 PSLTCHFIPTTGNNVTGTVHFSPFFIRQTKSKNRCFVRITAALTGLTPGA-HGFHIHTYGDIQSPDGKSAGGHFTDPSGNDLPHALPGEYPRHWGDFGSI-VAEDDGTAAYDR-IDYIVKLGGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANP 190
            P+LTC   PT GN+V GTV   P      ++ N+C   + A +TGL PG+ H +HIH  GDI + DG + GGHF      ++ H LPG +P H GD G++ VA   G +   R +  +V    + GRG+I+HA  D GG  QP+G AG R A+CV+G A P
Sbjct:   35 PALTCTLTPTKGNSVAGTVSIVP------RTGNQCGSILEATITGLPPGSTHAWHIHEAGDISADDGTATGGHFNP---QNVKHGLPGRWPLHVGDLGNLPVASSGGMSVVRRQVARLVNTRLVQGRGLIIHATRDDGG--QPTGNAGSRLAQCVLGVALP 184          
The following BLAST results are available for this feature:
BLAST of Ggra1295.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ983.500e-9567.01Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsi... [more]
A0A2V3IPW23.410e-5750.29Superoxide dismutase [Cu-Zn] n=1 Tax=Gracilariopsi... [more]
R7QQ004.950e-5344.44Potential copper-zinc superoxide dismutase, CuZn S... [more]
R7QRY58.550e-4848.78Potential copper-zinc superoxide dismutase, CuZn S... [more]
A0A5M4APY46.930e-3547.90Superoxide dismutase [Cu-Zn] n=2 Tax=Prolixibacter... [more]
A0A7Y3DCA23.600e-3348.68Superoxide dismutase family protein n=1 Tax=Myxoco... [more]
A0A523P8M01.920e-3249.34Superoxide dismutase family protein n=1 Tax=Planct... [more]
A0A3M1JMV22.580e-3252.94Superoxide dismutase family protein n=1 Tax=Candid... [more]
A0A3M1XPC18.530e-3249.02Superoxide dismutase [Cu-Zn] n=1 Tax=Calditrichaeo... [more]
V5KVA93.130e-2942.86Cu-Zn SOD n=1 Tax=Neoporphyra haitanensis TaxID=12... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilyGENE3D2.60.40.200Superoxide dismutase, copper/zinc binding domaincoord: 31..185
e-value: 5.8E-35
score: 122.6
IPR036423Superoxide dismutase-like, copper/zinc binding domain superfamilySUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 37..186
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 48..185
e-value: 4.4E-30
score: 104.9
IPR024134Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperonePANTHERPTHR10003SUPEROXIDE DISMUTASE CU-ZN -RELATEDcoord: 46..189
NoneNo IPR availablePANTHERPTHR10003:SF66SUPEROXIDE DISMUTASE [CU-ZN]coord: 46..189
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..197
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:63288..63881 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1295.t1Ggra1295.t1Gracilaria gracilis GNS1m malemRNAtig00000235_pilon 63288..63881 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1295.t1 ID=Ggra1295.t1|Name=Ggra1295.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=198bp
MSTNMFSFIFLVCLLSLTQARPIFWKKPCLSQPSLTCHFIPTTGNNVTGT
VHFSPFFIRQTKSKNRCFVRITAALTGLTPGAHGFHIHTYGDIQSPDGKS
AGGHFTDPSGNDLPHALPGEYPRHWGDFGSIVAEDDGTAAYDRIDYIVKL
GGITGRGMIVHAMEDMGGESQPSGAAGPRQARCVIGFANPDFLPQSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036423SOD-like_Cu/Zn_dom_sf
IPR001424SOD_Cu_Zn_dom
IPR024134SOD_Cu/Zn_/chaperone