Ggra1294.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1294.t1
Unique Name	Ggra1294.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	464

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000235_pilon	contig	tig00000235_pilon:61267..62658 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1294	Ggra1294	Gracilaria gracilis GNS1m male	gene	tig00000235_pilon 61267..62658 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1294.t1.start1	Ggra1294.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000235_pilon 61267..61269 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1294.t1.CDS1	Ggra1294.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000235_pilon 61267..62658 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1294.t1.exon1	Ggra1294.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000235_pilon 61267..62658 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1294.t1.stop1	Ggra1294.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000235_pilon 62656..62658 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1294.t1	Ggra1294.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000235_pilon 61267..62658 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000235_pilon:61267..62658+
coding sequence from alignment at tig00000235_pilon:61267..62658+

mRNA sequence

>Ggra1294.t1 ID=Ggra1294.t1|Name=Ggra1294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=464bp
MRLRLFKRRRYLFAFVLKRDLLSEHSLITANKMFRELATVLVFLLLVPSI
LTLCVPFEALLLQSFRKCCSLQRRGVPKSFVHPFYKAAIVEVLASIRVSY
APSTLLKNTCLPHQRAYFIRDKLKLASVLNAIRKTYDEEQEFFFLPYEEY
SDKQIGMSSKDVRVIMGSTWKKIATQFSRPLNQVQMRSLYQLPNSLTLFF
DPNHKAAKETFELYETGKEDTVGAPQLVKRVLQIITRLEVVQVPRKHSAQ
LLKHCVAFVFSACRSYRREGDELLLPAFFMAFYGEAERMLTEKEKKAGSE
LARIPLWLIQKHMKDEIKLICSFRTLGVLRYPVASHDGVVSIHELDVGVF
RKVGMIRKEWENARGRIKIRMLGSAVHKAFKCRKGSFYYRTISGADSTKN
CCISVCEAAELIHRIGMGSKRDCCRGCNVAKCAIDSTSRIRQVSTIRVEP
YGYSPAGVIPISL*

spliced messenger RNA

>Ggra1294.t1 ID=Ggra1294.t1|Name=Ggra1294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000235_pilon:61267..62658+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGCTTAGGCTCTTTAAACGGCGAAGATACCTTTTTGCTTTCGTATT
GAAGCGTGACCTCCTTTCTGAGCATAGTCTGATCACCGCGAACAAAATGT
TCCGAGAACTTGCAACAGTTCTCGTGTTTCTGCTTCTCGTCCCGTCAATA
CTGACACTCTGCGTGCCCTTCGAAGCCCTTCTTCTGCAATCATTTCGGAA
ATGCTGTTCTTTACAACGTCGAGGGGTCCCAAAATCATTTGTACATCCTT
TCTACAAAGCCGCCATTGTTGAAGTGCTGGCCTCCATTAGGGTGAGCTAT
GCTCCATCCACATTATTAAAAAACACATGTCTTCCACACCAGCGGGCTTA
CTTCATTCGAGACAAACTCAAACTTGCATCCGTTCTAAATGCCATTCGAA
AAACGTATGACGAAGAACAAGAGTTCTTCTTCCTACCGTACGAAGAGTAC
AGTGACAAGCAAATCGGAATGAGCAGTAAAGATGTGCGCGTTATTATGGG
TTCCACCTGGAAAAAGATTGCCACACAATTCAGTCGACCACTCAATCAAG
TGCAAATGCGTTCGTTGTATCAGTTACCGAACTCGTTGACATTGTTCTTC
GACCCCAACCACAAGGCGGCCAAAGAAACTTTCGAGCTGTACGAAACGGG
CAAAGAAGACACGGTTGGTGCCCCTCAGTTGGTGAAACGCGTTTTGCAGA
TAATAACGCGGCTGGAAGTGGTCCAAGTACCTCGGAAACACAGCGCTCAA
CTATTGAAACATTGCGTTGCGTTCGTATTCTCGGCTTGTAGATCATACAG
AAGAGAAGGTGATGAATTGCTTTTGCCGGCTTTCTTCATGGCGTTCTACG
GTGAAGCTGAGCGAATGCTGACAGAGAAAGAGAAGAAGGCTGGTTCCGAG
TTGGCTCGGATTCCGCTGTGGTTGATCCAGAAGCATATGAAGGATGAAAT
AAAACTAATATGCTCGTTCAGAACACTTGGTGTGCTGAGATATCCGGTTG
CGTCGCATGATGGTGTTGTAAGCATTCACGAACTGGACGTTGGCGTGTTC
CGGAAAGTAGGAATGATAAGGAAGGAATGGGAGAATGCGCGGGGGCGGAT
CAAGATTAGAATGTTGGGTAGCGCGGTGCACAAAGCATTCAAGTGCAGAA
AGGGATCGTTCTACTACAGAACGATAAGTGGAGCAGACTCAACGAAGAAT
TGTTGCATATCGGTATGCGAGGCAGCCGAGCTGATACACCGCATTGGAAT
GGGTTCAAAACGAGACTGCTGTCGCGGCTGCAATGTTGCAAAATGCGCAA
TTGACAGCACATCGAGGATTCGGCAGGTGAGCACCATTCGTGTTGAGCCG
TACGGATATTCGCCTGCTGGAGTGATACCGATATCGTTGTGA

protein sequence of Ggra1294.t1

>Ggra1294.t1 ID=Ggra1294.t1|Name=Ggra1294.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=464bp
MRLRLFKRRRYLFAFVLKRDLLSEHSLITANKMFRELATVLVFLLLVPSI
LTLCVPFEALLLQSFRKCCSLQRRGVPKSFVHPFYKAAIVEVLASIRVSY
APSTLLKNTCLPHQRAYFIRDKLKLASVLNAIRKTYDEEQEFFFLPYEEY
SDKQIGMSSKDVRVIMGSTWKKIATQFSRPLNQVQMRSLYQLPNSLTLFF
DPNHKAAKETFELYETGKEDTVGAPQLVKRVLQIITRLEVVQVPRKHSAQ
LLKHCVAFVFSACRSYRREGDELLLPAFFMAFYGEAERMLTEKEKKAGSE
LARIPLWLIQKHMKDEIKLICSFRTLGVLRYPVASHDGVVSIHELDVGVF
RKVGMIRKEWENARGRIKIRMLGSAVHKAFKCRKGSFYYRTISGADSTKN
CCISVCEAAELIHRIGMGSKRDCCRGCNVAKCAIDSTSRIRQVSTIRVEP
YGYSPAGVIPISL*

mRNA from alignment at tig00000235_pilon:61267..62658+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1294.t1 ID=Ggra1294.t1|Name=Ggra1294.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1392bp|location=Sequence derived from alignment at tig00000235_pilon:61267..62658+ (Gracilaria gracilis GNS1m male)
ATGCGGCTTAGGCTCTTTAAACGGCGAAGATACCTTTTTGCTTTCGTATT
GAAGCGTGACCTCCTTTCTGAGCATAGTCTGATCACCGCGAACAAAATGT
TCCGAGAACTTGCAACAGTTCTCGTGTTTCTGCTTCTCGTCCCGTCAATA
CTGACACTCTGCGTGCCCTTCGAAGCCCTTCTTCTGCAATCATTTCGGAA
ATGCTGTTCTTTACAACGTCGAGGGGTCCCAAAATCATTTGTACATCCTT
TCTACAAAGCCGCCATTGTTGAAGTGCTGGCCTCCATTAGGGTGAGCTAT
GCTCCATCCACATTATTAAAAAACACATGTCTTCCACACCAGCGGGCTTA
CTTCATTCGAGACAAACTCAAACTTGCATCCGTTCTAAATGCCATTCGAA
AAACGTATGACGAAGAACAAGAGTTCTTCTTCCTACCGTACGAAGAGTAC
AGTGACAAGCAAATCGGAATGAGCAGTAAAGATGTGCGCGTTATTATGGG
TTCCACCTGGAAAAAGATTGCCACACAATTCAGTCGACCACTCAATCAAG
TGCAAATGCGTTCGTTGTATCAGTTACCGAACTCGTTGACATTGTTCTTC
GACCCCAACCACAAGGCGGCCAAAGAAACTTTCGAGCTGTACGAAACGGG
CAAAGAAGACACGGTTGGTGCCCCTCAGTTGGTGAAACGCGTTTTGCAGA
TAATAACGCGGCTGGAAGTGGTCCAAGTACCTCGGAAACACAGCGCTCAA
CTATTGAAACATTGCGTTGCGTTCGTATTCTCGGCTTGTAGATCATACAG
AAGAGAAGGTGATGAATTGCTTTTGCCGGCTTTCTTCATGGCGTTCTACG
GTGAAGCTGAGCGAATGCTGACAGAGAAAGAGAAGAAGGCTGGTTCCGAG
TTGGCTCGGATTCCGCTGTGGTTGATCCAGAAGCATATGAAGGATGAAAT
AAAACTAATATGCTCGTTCAGAACACTTGGTGTGCTGAGATATCCGGTTG
CGTCGCATGATGGTGTTGTAAGCATTCACGAACTGGACGTTGGCGTGTTC
CGGAAAGTAGGAATGATAAGGAAGGAATGGGAGAATGCGCGGGGGCGGAT
CAAGATTAGAATGTTGGGTAGCGCGGTGCACAAAGCATTCAAGTGCAGAA
AGGGATCGTTCTACTACAGAACGATAAGTGGAGCAGACTCAACGAAGAAT
TGTTGCATATCGGTATGCGAGGCAGCCGAGCTGATACACCGCATTGGAAT
GGGTTCAAAACGAGACTGCTGTCGCGGCTGCAATGTTGCAAAATGCGCAA
TTGACAGCACATCGAGGATTCGGCAGGTGAGCACCATTCGTGTTGAGCCG
TACGGATATTCGCCTGCTGGAGTGATACCGATATCGTTGTGA

Coding sequence (CDS) from alignment at tig00000235_pilon:61267..62658+

>Ggra1294.t1 ID=Ggra1294.t1|Name=Ggra1294.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1392bp|location=Sequence derived from alignment at tig00000235_pilon:61267..62658+ (Gracilaria gracilis GNS1m male)
ATGCGGCTTAGGCTCTTTAAACGGCGAAGATACCTTTTTGCTTTCGTATT
GAAGCGTGACCTCCTTTCTGAGCATAGTCTGATCACCGCGAACAAAATGT
TCCGAGAACTTGCAACAGTTCTCGTGTTTCTGCTTCTCGTCCCGTCAATA
CTGACACTCTGCGTGCCCTTCGAAGCCCTTCTTCTGCAATCATTTCGGAA
ATGCTGTTCTTTACAACGTCGAGGGGTCCCAAAATCATTTGTACATCCTT
TCTACAAAGCCGCCATTGTTGAAGTGCTGGCCTCCATTAGGGTGAGCTAT
GCTCCATCCACATTATTAAAAAACACATGTCTTCCACACCAGCGGGCTTA
CTTCATTCGAGACAAACTCAAACTTGCATCCGTTCTAAATGCCATTCGAA
AAACGTATGACGAAGAACAAGAGTTCTTCTTCCTACCGTACGAAGAGTAC
AGTGACAAGCAAATCGGAATGAGCAGTAAAGATGTGCGCGTTATTATGGG
TTCCACCTGGAAAAAGATTGCCACACAATTCAGTCGACCACTCAATCAAG
TGCAAATGCGTTCGTTGTATCAGTTACCGAACTCGTTGACATTGTTCTTC
GACCCCAACCACAAGGCGGCCAAAGAAACTTTCGAGCTGTACGAAACGGG
CAAAGAAGACACGGTTGGTGCCCCTCAGTTGGTGAAACGCGTTTTGCAGA
TAATAACGCGGCTGGAAGTGGTCCAAGTACCTCGGAAACACAGCGCTCAA
CTATTGAAACATTGCGTTGCGTTCGTATTCTCGGCTTGTAGATCATACAG
AAGAGAAGGTGATGAATTGCTTTTGCCGGCTTTCTTCATGGCGTTCTACG
GTGAAGCTGAGCGAATGCTGACAGAGAAAGAGAAGAAGGCTGGTTCCGAG
TTGGCTCGGATTCCGCTGTGGTTGATCCAGAAGCATATGAAGGATGAAAT
AAAACTAATATGCTCGTTCAGAACACTTGGTGTGCTGAGATATCCGGTTG
CGTCGCATGATGGTGTTGTAAGCATTCACGAACTGGACGTTGGCGTGTTC
CGGAAAGTAGGAATGATAAGGAAGGAATGGGAGAATGCGCGGGGGCGGAT
CAAGATTAGAATGTTGGGTAGCGCGGTGCACAAAGCATTCAAGTGCAGAA
AGGGATCGTTCTACTACAGAACGATAAGTGGAGCAGACTCAACGAAGAAT
TGTTGCATATCGGTATGCGAGGCAGCCGAGCTGATACACCGCATTGGAAT
GGGTTCAAAACGAGACTGCTGTCGCGGCTGCAATGTTGCAAAATGCGCAA
TTGACAGCACATCGAGGATTCGGCAGGTGAGCACCATTCGTGTTGAGCCG
TACGGATATTCGCCTGCTGGAGTGATACCGATATCGTTGTGA