Ggra1289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1289.t1
Unique NameGgra1289.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length211
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:41456..42088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002500662.1
PFAMsUPF0172
Max annot lvl3041|Chlorophyta
Evalue9.98e-18
EggNOG OGsKOG3289@1|root,KOG3289@2759|Eukaryota,37SYK@33090|Viridiplantae,34MB2@3041|Chlorophyta
DescriptionChlorophyll antenna size regulatory protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1289Ggra1289Gracilaria gracilis GNS1m malegenetig00000235_pilon 41456..42088 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1289.t1.stop1Ggra1289.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 41456..41458 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1289.t1.CDS1Ggra1289.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 41456..42088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1289.t1.exon1Ggra1289.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 41456..42088 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1289.t1.start1Ggra1289.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 42086..42088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1289.t1Ggra1289.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 41456..42088 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1289.t1 ID=Ggra1289.t1|Name=Ggra1289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=211bp
MASMRYKLSDVSYATIILHAQQHPSNIIGVLLGTITTECVEIDTALPLIH
SDLTMFTSPMHEMSLLLSEQKARQHKKQIVGIYYSNALIDDTSIAEIPTL
TANAVQTRTGSTCLLMIDAKNLLKDTRKERHAFRVFVRNGEVSGTWGRSE
VPHDTLQVSDRALKLVDALLDGSILKNEHLFVADFEDHCNDPCVDWMNIK
LSSRLNALQL*
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spliced messenger RNA

>Ggra1289.t1 ID=Ggra1289.t1|Name=Ggra1289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000235_pilon:41456..42088- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCCATGAGGTATAAACTCTCCGATGTCAGCTACGCCACAATCAT
TCTACATGCTCAGCAGCACCCTTCGAACATAATTGGTGTGCTACTAGGAA
CAATCACCACAGAATGTGTCGAAATTGACACAGCACTACCTCTGATCCAT
TCTGATCTTACAATGTTCACGTCGCCCATGCACGAAATGTCTCTGCTTTT
AAGCGAACAAAAAGCGCGTCAACATAAGAAACAAATCGTCGGGATTTACT
ACTCAAATGCACTCATAGACGATACTAGCATTGCCGAAATCCCTACACTT
ACTGCGAACGCCGTTCAAACACGGACGGGAAGCACATGTCTTCTCATGAT
CGACGCGAAGAACCTGCTGAAGGACACACGAAAAGAACGGCATGCGTTTC
GAGTGTTCGTGAGAAACGGCGAAGTAAGCGGTACTTGGGGTAGAAGTGAA
GTGCCTCATGACACACTGCAAGTGTCTGATCGTGCGTTGAAGCTGGTTGA
TGCGCTGCTCGACGGATCGATTCTCAAAAACGAACACCTGTTTGTCGCTG
ACTTTGAGGATCATTGTAACGACCCATGTGTAGACTGGATGAATATCAAA
CTCAGCTCTCGTCTGAACGCGCTGCAGCTGTGA
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protein sequence of Ggra1289.t1

>Ggra1289.t1 ID=Ggra1289.t1|Name=Ggra1289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=211bp
MASMRYKLSDVSYATIILHAQQHPSNIIGVLLGTITTECVEIDTALPLIH
SDLTMFTSPMHEMSLLLSEQKARQHKKQIVGIYYSNALIDDTSIAEIPTL
TANAVQTRTGSTCLLMIDAKNLLKDTRKERHAFRVFVRNGEVSGTWGRSE
VPHDTLQVSDRALKLVDALLDGSILKNEHLFVADFEDHCNDPCVDWMNIK
LSSRLNALQL*
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mRNA from alignment at tig00000235_pilon:41456..42088-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1289.t1 ID=Ggra1289.t1|Name=Ggra1289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=633bp|location=Sequence derived from alignment at tig00000235_pilon:41456..42088- (Gracilaria gracilis GNS1m male)
ATGGCTTCCATGAGGTATAAACTCTCCGATGTCAGCTACGCCACAATCAT
TCTACATGCTCAGCAGCACCCTTCGAACATAATTGGTGTGCTACTAGGAA
CAATCACCACAGAATGTGTCGAAATTGACACAGCACTACCTCTGATCCAT
TCTGATCTTACAATGTTCACGTCGCCCATGCACGAAATGTCTCTGCTTTT
AAGCGAACAAAAAGCGCGTCAACATAAGAAACAAATCGTCGGGATTTACT
ACTCAAATGCACTCATAGACGATACTAGCATTGCCGAAATCCCTACACTT
ACTGCGAACGCCGTTCAAACACGGACGGGAAGCACATGTCTTCTCATGAT
CGACGCGAAGAACCTGCTGAAGGACACACGAAAAGAACGGCATGCGTTTC
GAGTGTTCGTGAGAAACGGCGAAGTAAGCGGTACTTGGGGTAGAAGTGAA
GTGCCTCATGACACACTGCAAGTGTCTGATCGTGCGTTGAAGCTGGTTGA
TGCGCTGCTCGACGGATCGATTCTCAAAAACGAACACCTGTTTGTCGCTG
ACTTTGAGGATCATTGTAACGACCCATGTGTAGACTGGATGAATATCAAA
CTCAGCTCTCGTCTGAACGCGCTGCAGCTGTGA
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Coding sequence (CDS) from alignment at tig00000235_pilon:41456..42088-

>Ggra1289.t1 ID=Ggra1289.t1|Name=Ggra1289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=633bp|location=Sequence derived from alignment at tig00000235_pilon:41456..42088- (Gracilaria gracilis GNS1m male)
ATGGCTTCCATGAGGTATAAACTCTCCGATGTCAGCTACGCCACAATCAT
TCTACATGCTCAGCAGCACCCTTCGAACATAATTGGTGTGCTACTAGGAA
CAATCACCACAGAATGTGTCGAAATTGACACAGCACTACCTCTGATCCAT
TCTGATCTTACAATGTTCACGTCGCCCATGCACGAAATGTCTCTGCTTTT
AAGCGAACAAAAAGCGCGTCAACATAAGAAACAAATCGTCGGGATTTACT
ACTCAAATGCACTCATAGACGATACTAGCATTGCCGAAATCCCTACACTT
ACTGCGAACGCCGTTCAAACACGGACGGGAAGCACATGTCTTCTCATGAT
CGACGCGAAGAACCTGCTGAAGGACACACGAAAAGAACGGCATGCGTTTC
GAGTGTTCGTGAGAAACGGCGAAGTAAGCGGTACTTGGGGTAGAAGTGAA
GTGCCTCATGACACACTGCAAGTGTCTGATCGTGCGTTGAAGCTGGTTGA
TGCGCTGCTCGACGGATCGATTCTCAAAAACGAACACCTGTTTGTCGCTG
ACTTTGAGGATCATTGTAACGACCCATGTGTAGACTGGATGAATATCAAA
CTCAGCTCTCGTCTGAACGCGCTGCAGCTGTGA
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