Ggra1287.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1287.t1
Unique NameGgra1287.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length417
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:32327..33752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1287Ggra1287Gracilaria gracilis GNS1m malegenetig00000235_pilon 32327..33752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1Ggra1287.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 32327..33752 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1.stop1Ggra1287.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 32327..32329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1.CDS1Ggra1287.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 32327..33185 -
Ggra1287.t1.CDS2Ggra1287.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000235_pilon 33361..33752 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1.exon1Ggra1287.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 32327..33185 -
Ggra1287.t1.exon2Ggra1287.t1.exon2Gracilaria gracilis GNS1m maleexontig00000235_pilon 33361..33752 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1.intron1Ggra1287.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000235_pilon 33186..33360 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1287.t1.start1Ggra1287.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 33750..33752 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1287.t1 ID=Ggra1287.t1|Name=Ggra1287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=417bp
MNAFLLLTAAVLLAFGNAQTNCRPQTLIDEENRSPMVISLDLHQNSLRRR
RGPNSLPPLLQRSIVECESTIEVLQVPDNTTDYEGVPLGSIVTIVETEVP
LLDSIQAAQRALPACTGIFISPSQILSSAHCVYKQRQNESEEAYWTYGDD
NPHNTFLYAIAGKVNAVDSTFDVYKLVQGCIPQSYVDAENEEVTSVMSND
LVVFQIEGEFVGDPLSIGTIAPSIVYDVVYEYMLPQYPSDVNDGRSLVID
KNTTPILFEPLGSGVFFSVDLASWSGSSGGPIIDMNATRTSGSPTIVGVL
MSSGWAVCDSGIVPVTSGIPIVKELITSTSNARRGRGEGKGTGSTFVTTE
TLNHEREPVPSLDFVEGSPEPLELRTIDDTEISDETDYFPMFSSEEETEP
YKNTVHKDEASSNYRA*
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spliced messenger RNA

>Ggra1287.t1 ID=Ggra1287.t1|Name=Ggra1287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1251bp|location=Sequence derived from alignment at tig00000235_pilon:32327..33752- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGCCTTCCTCCTGCTCACAGCCGCAGTATTGTTGGCTTTTGGTAA
CGCTCAAACCAATTGCCGGCCTCAAACATTGATTGATGAAGAAAATCGTT
CTCCAATGGTCATCTCTTTGGATCTTCACCAAAACTCTTTGCGTCGAAGG
CGAGGACCAAATTCTTTACCGCCACTTCTGCAACGATCAATAGTAGAATG
TGAGTCCACTATTGAAGTTCTACAGGTACCCGACAATACAACAGACTACG
AAGGTGTTCCGCTGGGAAGTATAGTAACTATTGTCGAAACAGAGGTTCCC
CTTCTTGATTCAATCCAAGCAGCCCAACGTGCGCTACCGGCCTGTACAGG
GATATTCATTTCACCTTCTCAAATTCTATCTAGTGCTCACTGTGTGTACA
AACAACGGCAAAATGAGAGCGAAGAGGCTTACTGGACGTATGGCGATGAC
AATCCGCACAATACCTTTCTTTATGCTATTGCCGGCAAAGTGAATGCAGT
GGACAGCACATTCGATGTCTACAAACTGGTTCAGGGATGCATACCACAGT
CTTATGTTGATGCTGAAAACGAGGAAGTTACCAGCGTCATGAGCAACGAT
TTGGTTGTCTTCCAAATCGAGGGGGAATTTGTTGGAGATCCGCTGTCGAT
AGGAACCATAGCGCCGTCCATTGTTTACGACGTTGTATATGAGTACATGT
TGCCGCAATACCCAAGCGATGTCAATGACGGGCGTAGTCTTGTGATCGAC
AAAAACACTACTCCAATTCTGTTTGAACCGCTCGGGAGCGGGGTATTCTT
CTCGGTTGATTTAGCATCGTGGTCAGGATCTTCCGGTGGTCCGATAATTG
ACATGAACGCAACGCGAACCAGCGGGAGTCCAACGATTGTGGGAGTCCTG
ATGAGCTCGGGGTGGGCTGTGTGTGATTCTGGTATCGTCCCCGTGACCTC
CGGTATTCCAATTGTCAAAGAGCTTATCACGTCTACTTCTAACGCAAGAC
GTGGAAGAGGAGAGGGGAAAGGGACTGGAAGCACTTTCGTGACAACCGAG
ACTCTCAATCATGAGCGAGAGCCTGTTCCCTCCCTAGATTTTGTCGAAGG
GAGTCCAGAGCCCTTAGAATTAAGAACCATTGATGACACTGAGATATCCG
ATGAAACTGATTATTTCCCAATGTTTTCCAGTGAGGAAGAAACGGAGCCG
TACAAGAACACAGTTCACAAGGACGAAGCCTCAAGTAATTACAGAGCATA
G
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protein sequence of Ggra1287.t1

>Ggra1287.t1 ID=Ggra1287.t1|Name=Ggra1287.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=417bp
MNAFLLLTAAVLLAFGNAQTNCRPQTLIDEENRSPMVISLDLHQNSLRRR
RGPNSLPPLLQRSIVECESTIEVLQVPDNTTDYEGVPLGSIVTIVETEVP
LLDSIQAAQRALPACTGIFISPSQILSSAHCVYKQRQNESEEAYWTYGDD
NPHNTFLYAIAGKVNAVDSTFDVYKLVQGCIPQSYVDAENEEVTSVMSND
LVVFQIEGEFVGDPLSIGTIAPSIVYDVVYEYMLPQYPSDVNDGRSLVID
KNTTPILFEPLGSGVFFSVDLASWSGSSGGPIIDMNATRTSGSPTIVGVL
MSSGWAVCDSGIVPVTSGIPIVKELITSTSNARRGRGEGKGTGSTFVTTE
TLNHEREPVPSLDFVEGSPEPLELRTIDDTEISDETDYFPMFSSEEETEP
YKNTVHKDEASSNYRA*
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mRNA from alignment at tig00000235_pilon:32327..33752-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1287.t1 ID=Ggra1287.t1|Name=Ggra1287.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1426bp|location=Sequence derived from alignment at tig00000235_pilon:32327..33752- (Gracilaria gracilis GNS1m male)
ATGAATGCCTTCCTCCTGCTCACAGCCGCAGTATTGTTGGCTTTTGGTAA
CGCTCAAACCAATTGCCGGCCTCAAACATTGATTGATGAAGAAAATCGTT
CTCCAATGGTCATCTCTTTGGATCTTCACCAAAACTCTTTGCGTCGAAGG
CGAGGACCAAATTCTTTACCGCCACTTCTGCAACGATCAATAGTAGAATG
TGAGTCCACTATTGAAGTTCTACAGGTACCCGACAATACAACAGACTACG
AAGGTGTTCCGCTGGGAAGTATAGTAACTATTGTCGAAACAGAGGTTCCC
CTTCTTGATTCAATCCAAGCAGCCCAACGTGCGCTACCGGCCTGTACAGG
GATATTCATTTCACCTTCTCAAATTCTATCTAGTGCTCACTGGTAAGTTA
ATCAGAAGAACCTCTACTCGCAAACCACACATTCGTAGGATCGACAGACG
CGCTACGCCCACAATAAAGGTAGAAGGGAAGAACCGATTCTCTAAATCCA
ATCCCCCACTCTGGAGAAACGACTAACTCTCTCTGTACTCCATTTGCGTT
ATTTGTTTCTACTGCAGTGTGTACAAACAACGGCAAAATGAGAGCGAAGA
GGCTTACTGGACGTATGGCGATGACAATCCGCACAATACCTTTCTTTATG
CTATTGCCGGCAAAGTGAATGCAGTGGACAGCACATTCGATGTCTACAAA
CTGGTTCAGGGATGCATACCACAGTCTTATGTTGATGCTGAAAACGAGGA
AGTTACCAGCGTCATGAGCAACGATTTGGTTGTCTTCCAAATCGAGGGGG
AATTTGTTGGAGATCCGCTGTCGATAGGAACCATAGCGCCGTCCATTGTT
TACGACGTTGTATATGAGTACATGTTGCCGCAATACCCAAGCGATGTCAA
TGACGGGCGTAGTCTTGTGATCGACAAAAACACTACTCCAATTCTGTTTG
AACCGCTCGGGAGCGGGGTATTCTTCTCGGTTGATTTAGCATCGTGGTCA
GGATCTTCCGGTGGTCCGATAATTGACATGAACGCAACGCGAACCAGCGG
GAGTCCAACGATTGTGGGAGTCCTGATGAGCTCGGGGTGGGCTGTGTGTG
ATTCTGGTATCGTCCCCGTGACCTCCGGTATTCCAATTGTCAAAGAGCTT
ATCACGTCTACTTCTAACGCAAGACGTGGAAGAGGAGAGGGGAAAGGGAC
TGGAAGCACTTTCGTGACAACCGAGACTCTCAATCATGAGCGAGAGCCTG
TTCCCTCCCTAGATTTTGTCGAAGGGAGTCCAGAGCCCTTAGAATTAAGA
ACCATTGATGACACTGAGATATCCGATGAAACTGATTATTTCCCAATGTT
TTCCAGTGAGGAAGAAACGGAGCCGTACAAGAACACAGTTCACAAGGACG
AAGCCTCAAGTAATTACAGAGCATAG
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Coding sequence (CDS) from alignment at tig00000235_pilon:32327..33752-

>Ggra1287.t1 ID=Ggra1287.t1|Name=Ggra1287.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1251bp|location=Sequence derived from alignment at tig00000235_pilon:32327..33752- (Gracilaria gracilis GNS1m male)
ATGAATGCCTTCCTCCTGCTCACAGCCGCAGTATTGTTGGCTTTTGGTAA
CGCTCAAACCAATTGCCGGCCTCAAACATTGATTGATGAAGAAAATCGTT
CTCCAATGGTCATCTCTTTGGATCTTCACCAAAACTCTTTGCGTCGAAGG
CGAGGACCAAATTCTTTACCGCCACTTCTGCAACGATCAATAGTAGAATG
TGAGTCCACTATTGAAGTTCTACAGGTACCCGACAATACAACAGACTACG
AAGGTGTTCCGCTGGGAAGTATAGTAACTATTGTCGAAACAGAGGTTCCC
CTTCTTGATTCAATCCAAGCAGCCCAACGTGCGCTACCGGCCTGTACAGG
GATATTCATTTCACCTTCTCAAATTCTATCTAGTGCTCACTGTGTGTACA
AACAACGGCAAAATGAGAGCGAAGAGGCTTACTGGACGTATGGCGATGAC
AATCCGCACAATACCTTTCTTTATGCTATTGCCGGCAAAGTGAATGCAGT
GGACAGCACATTCGATGTCTACAAACTGGTTCAGGGATGCATACCACAGT
CTTATGTTGATGCTGAAAACGAGGAAGTTACCAGCGTCATGAGCAACGAT
TTGGTTGTCTTCCAAATCGAGGGGGAATTTGTTGGAGATCCGCTGTCGAT
AGGAACCATAGCGCCGTCCATTGTTTACGACGTTGTATATGAGTACATGT
TGCCGCAATACCCAAGCGATGTCAATGACGGGCGTAGTCTTGTGATCGAC
AAAAACACTACTCCAATTCTGTTTGAACCGCTCGGGAGCGGGGTATTCTT
CTCGGTTGATTTAGCATCGTGGTCAGGATCTTCCGGTGGTCCGATAATTG
ACATGAACGCAACGCGAACCAGCGGGAGTCCAACGATTGTGGGAGTCCTG
ATGAGCTCGGGGTGGGCTGTGTGTGATTCTGGTATCGTCCCCGTGACCTC
CGGTATTCCAATTGTCAAAGAGCTTATCACGTCTACTTCTAACGCAAGAC
GTGGAAGAGGAGAGGGGAAAGGGACTGGAAGCACTTTCGTGACAACCGAG
ACTCTCAATCATGAGCGAGAGCCTGTTCCCTCCCTAGATTTTGTCGAAGG
GAGTCCAGAGCCCTTAGAATTAAGAACCATTGATGACACTGAGATATCCG
ATGAAACTGATTATTTCCCAATGTTTTCCAGTGAGGAAGAAACGGAGCCG
TACAAGAACACAGTTCACAAGGACGAAGCCTCAAGTAATTACAGAGCATA
G
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