Ggra1280.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1280.t1
Unique NameGgra1280.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length131
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:15666..16058 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008780937.1
PFAMsHIG_1_N
Max annot lvl35493|Streptophyta
Evalue8.78e-11
EggNOG OGsKOG4431@1|root,KOG4431@2759|Eukaryota,37W5X@33090|Viridiplantae,3GK82@35493|Streptophyta,3M1JT@4447|Liliopsida
DescriptionHypoxia induced protein conserved region
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1280Ggra1280Gracilaria gracilis GNS1m malegenetig00000235_pilon 15666..16058 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1.stop1Ggra1280.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000235_pilon 15666..15668 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1.CDS1Ggra1280.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000235_pilon 15666..16058 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1.exon1Ggra1280.t1.exon1Gracilaria gracilis GNS1m maleexontig00000235_pilon 15666..16058 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1.start1Ggra1280.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000235_pilon 16056..16058 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1Ggra1280.t1Gracilaria gracilis GNS1m malepolypeptidetig00000235_pilon 15666..16058 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=131bp
MSNASAHDNGERDDARDGRRAAAPRIILTAPHGDDSDHDDYHRVDAELLA
SFDAALPPKRDLSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTM
MRARVVAQAATLGVLGASVTQQHQRQSGAQ*
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spliced messenger RNA

>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000235_pilon:15666..16058- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACGCGTCCGCGCACGATAACGGCGAGCGCGACGACGCGCGCGA
CGGCCGCCGCGCAGCGGCGCCACGCATCATCCTGACGGCGCCGCACGGCG
ACGACAGCGACCACGACGACTACCACCGCGTGGACGCCGAGCTGCTTGCG
TCGTTCGACGCGGCGCTGCCGCCAAAGCGCGACCTGTCGCTGCTGCGCAA
GAACCCGCTGGTGCCGGCGGGCGCGCTGGCCACGGCGGCCGTGCTGGGCG
TGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCCTGTCGCAGACGATG
ATGCGCGCGCGCGTGGTGGCGCAGGCCGCCACGCTGGGCGTGCTGGGCGC
CTCCGTCACTCAGCAGCACCAGCGCCAAAGCGGCGCTCAATAA
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protein sequence of Ggra1280.t1

>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=131bp
MSNASAHDNGERDDARDGRRAAAPRIILTAPHGDDSDHDDYHRVDAELLA
SFDAALPPKRDLSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTM
MRARVVAQAATLGVLGASVTQQHQRQSGAQ*
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mRNA from alignment at tig00000235_pilon:15666..16058-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=393bp|location=Sequence derived from alignment at tig00000235_pilon:15666..16058- (Gracilaria gracilis GNS1m male)
ATGAGCAACGCGTCCGCGCACGATAACGGCGAGCGCGACGACGCGCGCGA
CGGCCGCCGCGCAGCGGCGCCACGCATCATCCTGACGGCGCCGCACGGCG
ACGACAGCGACCACGACGACTACCACCGCGTGGACGCCGAGCTGCTTGCG
TCGTTCGACGCGGCGCTGCCGCCAAAGCGCGACCTGTCGCTGCTGCGCAA
GAACCCGCTGGTGCCGGCGGGCGCGCTGGCCACGGCGGCCGTGCTGGGCG
TGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCCTGTCGCAGACGATG
ATGCGCGCGCGCGTGGTGGCGCAGGCCGCCACGCTGGGCGTGCTGGGCGC
CTCCGTCACTCAGCAGCACCAGCGCCAAAGCGGCGCTCAATAA
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Coding sequence (CDS) from alignment at tig00000235_pilon:15666..16058-

>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=393bp|location=Sequence derived from alignment at tig00000235_pilon:15666..16058- (Gracilaria gracilis GNS1m male)
ATGAGCAACGCGTCCGCGCACGATAACGGCGAGCGCGACGACGCGCGCGA
CGGCCGCCGCGCAGCGGCGCCACGCATCATCCTGACGGCGCCGCACGGCG
ACGACAGCGACCACGACGACTACCACCGCGTGGACGCCGAGCTGCTTGCG
TCGTTCGACGCGGCGCTGCCGCCAAAGCGCGACCTGTCGCTGCTGCGCAA
GAACCCGCTGGTGCCGGCGGGCGCGCTGGCCACGGCGGCCGTGCTGGGCG
TGGGGCTGCTGGCGTTCCGCGCCGGCAACACGCGCCTGTCGCAGACGATG
ATGCGCGCGCGCGTGGTGGCGCAGGCCGCCACGCTGGGCGTGCTGGGCGC
CTCCGTCACTCAGCAGCACCAGCGCCAAAGCGGCGCTCAATAA
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