Ggra1280.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1280.t1
Unique NameGgra1280.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length131
Homology
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A2V3IQ53 (RING-H2 finger protein ATL48 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ53_9FLOR)

HSP 1 Score: 80.1 bits (196), Expect = 6.840e-17
Identity = 44/64 (68.75%), Postives = 47/64 (73.44%), Query Frame = 0
Query:   56 LPPKRDLSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVLGASV 119
            LPP+RDLS  RKNPLV  GAL T  VL  GLLAF  GN RLSQ+MMR RV+AQ ATL  L ASV
Sbjct:   47 LPPRRDLSQFRKNPLVAGGALFTGGVLLAGLLAFHRGNQRLSQSMMRLRVIAQGATLAALAASV 110          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A443NF44 (RING-H2 finger protein ATL48-like protein n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443NF44_9MAGN)

HSP 1 Score: 63.5 bits (153), Expect = 7.980e-11
Identity = 32/49 (65.31%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   67 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            KNPLVP GAL TA VL  GL++FR GN+RL Q +MRARVVAQ AT+ ++
Sbjct:   22 KNPLVPLGALVTAGVLTAGLISFRQGNSRLGQKLMRARVVAQGATVALM 70          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A6J1AZC7 (RING-H2 finger protein ATL48-like n=1 Tax=Herrania umbratica TaxID=108875 RepID=A0A6J1AZC7_9ROSI)

HSP 1 Score: 63.5 bits (153), Expect = 8.180e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   67 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            +NPLVP GAL TA VL  GL++FR GN+RL Q +MRARVV Q AT+G++
Sbjct:   19 RNPLVPVGALITAGVLTAGLISFRLGNSRLGQVLMRARVVVQGATVGLM 67          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A852PC43 (HIG2A protein (Fragment) n=1 Tax=Atrichornis clamosus TaxID=449594 RepID=A0A852PC43_9PASS)

HSP 1 Score: 63.5 bits (153), Expect = 1.440e-10
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   66 RKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            R+NPLVP G L T  VLG GLL+FR GNTR SQ MMRAR+VAQ  T   L
Sbjct:   43 RENPLVPLGCLCTVGVLGYGLLSFRKGNTRRSQLMMRARIVAQGFTFAAL 92          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A5J5AMF9 (HIG1 domain-containing protein n=2 Tax=asterids TaxID=71274 RepID=A0A5J5AMF9_9ASTE)

HSP 1 Score: 62.4 bits (150), Expect = 2.250e-10
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 0
Query:   67 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            KNP VP GAL TA VL  GL++FR GN+RL QT+MRARVV Q AT+ ++
Sbjct:   22 KNPFVPIGALITAGVLTAGLISFRQGNSRLGQTLMRARVVVQGATVALM 70          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A2R5GCC1 (Respiratory supercomplex factor 1, mitochondrial n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCC1_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.250e-10
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0
Query:   62 LSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL--GASVTQQHQRQ 126
            +S +R  PLVP G + TA VL  G+ +FRAGN +LSQ MMRARV+AQ  TLG L  GA V+ Q++++
Sbjct:   10 MSKIRAEPLVPIGCVVTAVVLFGGIASFRAGNQKLSQQMMRARVLAQGGTLGALAYGAYVSAQNKKE 76          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A5C7H0M7 (HIG1 domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7H0M7_9ROSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.510e-10
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 0
Query:   49 LASFDAALPPKRDLSLLRK---NPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            +   DA  P   +L   +K   NP VP GAL TA VL  GL++FR GN+RL QT+MRARVV Q AT+ ++
Sbjct:    1 MEKMDAVEPSLEELLQEKKRVRNPFVPIGALMTAGVLTAGLISFRRGNSRLGQTLMRARVVVQGATVALM 70          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A8C5UGM9 (HIG1 domain-containing protein n=2 Tax=Malurus TaxID=55806 RepID=A0A8C5UGM9_9PASS)

HSP 1 Score: 62.0 bits (149), Expect = 4.280e-10
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   66 RKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            R+NPLVP G L+T  VL  GLL+FR GNTR SQ MMRARVVAQ  T   L
Sbjct:   31 RENPLVPLGCLSTVGVLAYGLLSFRKGNTRRSQLMMRARVVAQGFTFAAL 80          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A484MSM8 (HIG1 domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MSM8_9ASTE)

HSP 1 Score: 61.2 bits (147), Expect = 6.350e-10
Identity = 30/49 (61.22%), Postives = 39/49 (79.59%), Query Frame = 0
Query:   67 KNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            +NPLVP GAL TA VL  GL++FR GN++L Q +MRARVVAQ AT+ ++
Sbjct:   19 RNPLVPIGALVTAGVLTAGLISFRQGNSKLGQKLMRARVVAQGATVALM 67          
BLAST of Ggra1280.t1 vs. uniprot
Match: A0A1B0EUC2 (HIG1 domain-containing protein n=6 Tax=Glossina TaxID=7393 RepID=A0A1B0EUC2_GLOMM)

HSP 1 Score: 61.6 bits (148), Expect = 7.510e-10
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 0
Query:   54 AALPPKRDLSLLRK---NPLVPAGALATAAVLGVGLLAFRAGNTRLSQTMMRARVVAQAATLGVL 115
            +A P      ++RK   NPLVP G LATA+ LG GL  FR GN R+SQ MMRAR++AQ  T+  L
Sbjct:   26 SAFPETTKEKMMRKIKENPLVPIGCLATASALGFGLYNFRTGNRRMSQMMMRARIIAQGFTVAAL 90          
The following BLAST results are available for this feature:
BLAST of Ggra1280.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQ536.840e-1768.75RING-H2 finger protein ATL48 n=1 Tax=Gracilariopsi... [more]
A0A443NF447.980e-1165.31RING-H2 finger protein ATL48-like protein n=1 Tax=... [more]
A0A6J1AZC78.180e-1163.27RING-H2 finger protein ATL48-like n=1 Tax=Herrania... [more]
A0A852PC431.440e-1066.00HIG2A protein (Fragment) n=1 Tax=Atrichornis clamo... [more]
A0A5J5AMF92.250e-1063.27HIG1 domain-containing protein n=2 Tax=asterids Ta... [more]
A0A2R5GCC12.250e-1053.73Respiratory supercomplex factor 1, mitochondrial n... [more]
A0A5C7H0M73.510e-1050.00HIG1 domain-containing protein n=1 Tax=Acer yangbi... [more]
A0A8C5UGM94.280e-1066.00HIG1 domain-containing protein n=2 Tax=Malurus Tax... [more]
A0A484MSM86.350e-1061.22HIG1 domain-containing protein n=3 Tax=Cuscuta sec... [more]
A0A1B0EUC27.510e-1052.31HIG1 domain-containing protein n=6 Tax=Glossina Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.1320coord: 68..126
e-value: 3.8E-15
score: 57.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 7..21
NoneNo IPR availablePANTHERPTHR12297HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATEDcoord: 65..125
NoneNo IPR availablePANTHERPTHR12297:SF3HIG1 DOMAIN FAMILY MEMBER 2Acoord: 65..125
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..130
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..92
NoneNo IPR availableTMHMMTMhelixcoord: 70..92
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 67..117
e-value: 1.7E-17
score: 63.3
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 42..130
score: 18.603039

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000235_piloncontigtig00000235_pilon:15666..16058 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1280.t1Ggra1280.t1Gracilaria gracilis GNS1m malemRNAtig00000235_pilon 15666..16058 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1280.t1 ID=Ggra1280.t1|Name=Ggra1280.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=131bp
MSNASAHDNGERDDARDGRRAAAPRIILTAPHGDDSDHDDYHRVDAELLA
SFDAALPPKRDLSLLRKNPLVPAGALATAAVLGVGLLAFRAGNTRLSQTM
MRARVVAQAATLGVLGASVTQQHQRQSGAQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain