Ggra1269.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1269.t1
Unique NameGgra1269.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length425
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:141081..143678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1269Ggra1269Gracilaria gracilis GNS1m malegenetig00000208_pilon 141081..143678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1Ggra1269.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 141081..143678 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1.start1Ggra1269.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 141081..141083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1.CDS1Ggra1269.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 141081..141267 +
Ggra1269.t1.CDS2Ggra1269.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000208_pilon 141347..142430 +
Ggra1269.t1.CDS3Ggra1269.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000208_pilon 143675..143678 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1.exon1Ggra1269.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 141081..141267 +
Ggra1269.t1.exon2Ggra1269.t1.exon2Gracilaria gracilis GNS1m maleexontig00000208_pilon 141347..142430 +
Ggra1269.t1.exon3Ggra1269.t1.exon3Gracilaria gracilis GNS1m maleexontig00000208_pilon 143675..143678 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1.intron1Ggra1269.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000208_pilon 141268..141346 +
Ggra1269.t1.intron2Ggra1269.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000208_pilon 142431..143674 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1269.t1.stop1Ggra1269.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 143676..143678 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1269.t1 ID=Ggra1269.t1|Name=Ggra1269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=425bp
MEELERTAVPRRRKKTGEETHSQDDLNDGVDGIEPELMETVDESCGTGNT
RRTAPRKGGSTYAPAPISSSEEGNGTMSSSCSSQDEQSNENHNGVATISE
MKRSSHKMKGKQLLTDITNIVSDEGMFSQWNLGEGDEMFGSGIGGNLEEL
YSGSNRMVRACHERDDDDVYENDDEESAGREVKRQKRARESCTVSSGSPI
DMLNDVDTTTADAAAAELDRDAAAGDAMEVAVADSGAPRAIAAPRDVKVS
GMSRSRKRMLENTIDAEQVVHDGLFEGHGGNSDNSGGSGAKMRRALRFSI
EQDRIHEKALKRNRTGSSSTRALPTTNPSANQGDAATNITEPPSHVDPHE
GQRLRRGLIERVEDAEQAPVHHQQHQHEQHEEQHEPQDAHNDQQDQQQLQ
QNQEQQHEEHLREEHGMQDEVVAE*
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spliced messenger RNA

>Ggra1269.t1 ID=Ggra1269.t1|Name=Ggra1269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1275bp|location=Sequence derived from alignment at tig00000208_pilon:141081..143678+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGAGTTGGAGCGGACCGCTGTGCCACGACGGCGCAAGAAGACAGG
AGAAGAGACGCACTCGCAAGATGACCTCAACGACGGCGTTGATGGGATTG
AGCCAGAACTGATGGAAACCGTTGATGAGAGTTGCGGGACCGGGAACACG
AGGAGAACGGCACCGAGAAAGGGAGGGAGCACATATGCCCCTGCTCCTAT
TTCATCATCCGAAGAGGGAAATGGTACCATGTCCTCTTCGTGTTCTTCCC
AAGATGAGCAAAGCAACGAAAACCACAATGGTGTTGCCACCATTTCCGAA
ATGAAACGGAGCAGTCATAAGATGAAGGGGAAGCAGTTATTGACTGATAT
AACCAATATCGTGTCCGATGAAGGGATGTTTTCGCAATGGAATCTTGGAG
AAGGGGATGAAATGTTTGGAAGTGGGATTGGCGGGAATTTGGAAGAGCTG
TACTCTGGTTCCAATCGCATGGTGCGCGCATGTCATGAGCGtgatgatga
tgatgtttatgagaatgatgatgaagaATCCGCTGGGCGTGAAGTGAAGC
GGCAGAAAAGGGCCAGAGAAAGTTGCACAGTTTCGAGCGGGAGCCCTATT
GACATGCTCAACGACGTTGACACGACAACAGCTGATGCCGCTGCAGCGGA
ACTGGACCGTGACGCGGCCGCCGGAGATGCAATGGAAGTGGCTGTGGCTG
ATTCGGGTGCGCCTAGAGCCATTGCAGCTCCTCGTGATGTGAAAGTGAGT
GGTATGAGCAGAAGCCGGAAGAGAATGTTGGAAAATACAATTGATGCTGA
GCAAGTTGTACACGATGGACTCTTTGAAGGACACGGTGGTAACTCAGATA
ATAGCGGTGGGAGTGGAGCGAAGATGCGTAGAGCTCTACGGTTCTCAATC
GAGCAGGACCGTATTCATGAGAAAGCACTGAAGCGGAACCGCACGGGAAG
TAGCAGCACTCGTGCTCTACCCACCACCAATCCGAGCGCAAACCAAGGCG
ATGCGGCAACCAACATTACAGAACCTCCATCTCATGTAGATCCACATGAG
GGGCAGCGTTTGAGACGTGGGTTGATTGAACGAGTAGAAGATGCTGAGCA
AGCGCCCGTTCATCACCAGCAGCATCAGCATGAACAGCATGAAGAGCAGC
ACGAGCCGCAGGATGCGCACAATGATCAGCAGGATCAGCAACAGCTGCAA
CAGAATCAGGAACAGCAGCATGAAGAACATCTGCGGGAAGAGCACGGAAT
GCAAGATGAAGtggtggctgaGTAA
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protein sequence of Ggra1269.t1

>Ggra1269.t1 ID=Ggra1269.t1|Name=Ggra1269.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=425bp
MEELERTAVPRRRKKTGEETHSQDDLNDGVDGIEPELMETVDESCGTGNT
RRTAPRKGGSTYAPAPISSSEEGNGTMSSSCSSQDEQSNENHNGVATISE
MKRSSHKMKGKQLLTDITNIVSDEGMFSQWNLGEGDEMFGSGIGGNLEEL
YSGSNRMVRACHERDDDDVYENDDEESAGREVKRQKRARESCTVSSGSPI
DMLNDVDTTTADAAAAELDRDAAAGDAMEVAVADSGAPRAIAAPRDVKVS
GMSRSRKRMLENTIDAEQVVHDGLFEGHGGNSDNSGGSGAKMRRALRFSI
EQDRIHEKALKRNRTGSSSTRALPTTNPSANQGDAATNITEPPSHVDPHE
GQRLRRGLIERVEDAEQAPVHHQQHQHEQHEEQHEPQDAHNDQQDQQQLQ
QNQEQQHEEHLREEHGMQDEVVAE*
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mRNA from alignment at tig00000208_pilon:141081..143678+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1269.t1 ID=Ggra1269.t1|Name=Ggra1269.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2598bp|location=Sequence derived from alignment at tig00000208_pilon:141081..143678+ (Gracilaria gracilis GNS1m male)
ATGGAGGAGTTGGAGCGGACCGCTGTGCCACGACGGCGCAAGAAGACAGG
AGAAGAGACGCACTCGCAAGATGACCTCAACGACGGCGTTGATGGGATTG
AGCCAGAACTGATGGAAACCGTTGATGAGAGTTGCGGGACCGGGAACACG
AGGAGAACGGCACCGAGAAAGGGAGGGAGCACATATGGTGTGAGAAGAGA
TCCCTCAATACAACGAAGAATGCATGCGATGAGCCAGTTGATGCAAACCT
ACCGCGAGAACAACAGCCCCTGCTCCTATTTCATCATCCGAAGAGGGAAA
TGGTACCATGTCCTCTTCGTGTTCTTCCCAAGATGAGCAAAGCAACGAAA
ACCACAATGGTGTTGCCACCATTTCCGAAATGAAACGGAGCAGTCATAAG
ATGAAGGGGAAGCAGTTATTGACTGATATAACCAATATCGTGTCCGATGA
AGGGATGTTTTCGCAATGGAATCTTGGAGAAGGGGATGAAATGTTTGGAA
GTGGGATTGGCGGGAATTTGGAAGAGCTGTACTCTGGTTCCAATCGCATG
GTGCGCGCATGTCATGAGCGtgatgatgatgatgtttatgagaatgatga
tgaagaATCCGCTGGGCGTGAAGTGAAGCGGCAGAAAAGGGCCAGAGAAA
GTTGCACAGTTTCGAGCGGGAGCCCTATTGACATGCTCAACGACGTTGAC
ACGACAACAGCTGATGCCGCTGCAGCGGAACTGGACCGTGACGCGGCCGC
CGGAGATGCAATGGAAGTGGCTGTGGCTGATTCGGGTGCGCCTAGAGCCA
TTGCAGCTCCTCGTGATGTGAAAGTGAGTGGTATGAGCAGAAGCCGGAAG
AGAATGTTGGAAAATACAATTGATGCTGAGCAAGTTGTACACGATGGACT
CTTTGAAGGACACGGTGGTAACTCAGATAATAGCGGTGGGAGTGGAGCGA
AGATGCGTAGAGCTCTACGGTTCTCAATCGAGCAGGACCGTATTCATGAG
AAAGCACTGAAGCGGAACCGCACGGGAAGTAGCAGCACTCGTGCTCTACC
CACCACCAATCCGAGCGCAAACCAAGGCGATGCGGCAACCAACATTACAG
AACCTCCATCTCATGTAGATCCACATGAGGGGCAGCGTTTGAGACGTGGG
TTGATTGAACGAGTAGAAGATGCTGAGCAAGCGCCCGTTCATCACCAGCA
GCATCAGCATGAACAGCATGAAGAGCAGCACGAGCCGCAGGATGCGCACA
ATGATCAGCAGGATCAGCAACAGCTGCAACAGAATCAGGAACAGCAGCAT
GAAGAACATCTGCGGGAAGAGCACGGAATGCAAGATGAAGtggtggctga
gtaccttcgaaatctcgtttgtgagcaggaggaagaattgcggagtcgga
atgacgatgtgttcgccacaagtgtagaaatatttcaacgacgagatggg
ggtgttgccagtgctcgcggaactctttccggccaaaagaagaagaagaa
gctttcagctgcggagaggaggaagcaacggatggaggcacggacgcgac
tgttgcgaaagcagccaaataatgtgcagtggagaaccatgattgatgaa
gttttggcgcgctatccgcagtatttcacgagtgacaacgctgtattgaa
agagaacaagaagtgtgcgaagggggtcatcacttatcctggactccgaa
ttacgcagaccaattgccatgacctggggaccatttacaacactcgcttc
aagctctcgcttcttctcagcgggtcggttgcgggcagtttttcgacatt
gaaaagtataatgggacagttcatgcgttggtgtattgcggccaaggtga
taaacaagtatagtggatggaaacggggcgcattgttcgcacaaatggca
aacgttcatcttgtccgctcgtttgtgaattacttcattatcaattcgtc
agcgaatactgtggtgagcaagtgctatacgctttcgatcgttagcgatt
atgctcagcttcacacaagtggcgccgaagaaacgcagctgatgaaacga
gtgcagatgtacttgaacagcacgttcaatgcggctaagcgacgatcaag
agaggaacgacggaagcgacaaaacgccgaggaacggttggagaagcaga
caattgtgtcggcagagcatgtaaagaaaggaatagcgttggcccgagcg
aacctgaatggcgtcatcgatacctatcttgtggacgttgaaacgaaatc
aaagagagaagcgatcggaaggtttaggagcacggcagggcttgtgaaca
agtggtgtatcaacctcgtcggactcctaacgcttaccggtggagggcag
cgacctcaagcgtatgcgaggttacagtgcccccccaggcagcttgtgga
ggaagggtatgatgtggacatcgagagctctccgcccggtgtgatcacgt
taaaacTGCTCCAGGTACCCCAGGGCTTTATGCCACGAGTCTCAATCCAC
ATGGTGAATACCAGTAAAGTCGTTGACTCTTGATAGCTCTAGGACGCATG
ATTGCATGTTCGGTTTCACAATGCTTTGCCTTTGGCACCTCCAGGTAA
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Coding sequence (CDS) from alignment at tig00000208_pilon:141081..143678+

>Ggra1269.t1 ID=Ggra1269.t1|Name=Ggra1269.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1275bp|location=Sequence derived from alignment at tig00000208_pilon:141081..143678+ (Gracilaria gracilis GNS1m male)
ATGGAGGAGTTGGAGCGGACCGCTGTGCCACGACGGCGCAAGAAGACAGG
AGAAGAGACGCACTCGCAAGATGACCTCAACGACGGCGTTGATGGGATTG
AGCCAGAACTGATGGAAACCGTTGATGAGAGTTGCGGGACCGGGAACACG
AGGAGAACGGCACCGAGAAAGGGAGGGAGCACATATGCCCCTGCTCCTAT
TTCATCATCCGAAGAGGGAAATGGTACCATGTCCTCTTCGTGTTCTTCCC
AAGATGAGCAAAGCAACGAAAACCACAATGGTGTTGCCACCATTTCCGAA
ATGAAACGGAGCAGTCATAAGATGAAGGGGAAGCAGTTATTGACTGATAT
AACCAATATCGTGTCCGATGAAGGGATGTTTTCGCAATGGAATCTTGGAG
AAGGGGATGAAATGTTTGGAAGTGGGATTGGCGGGAATTTGGAAGAGCTG
TACTCTGGTTCCAATCGCATGGTGCGCGCATGTCATGAGCGtgatgatga
tgatgtttatgagaatgatgatgaagaATCCGCTGGGCGTGAAGTGAAGC
GGCAGAAAAGGGCCAGAGAAAGTTGCACAGTTTCGAGCGGGAGCCCTATT
GACATGCTCAACGACGTTGACACGACAACAGCTGATGCCGCTGCAGCGGA
ACTGGACCGTGACGCGGCCGCCGGAGATGCAATGGAAGTGGCTGTGGCTG
ATTCGGGTGCGCCTAGAGCCATTGCAGCTCCTCGTGATGTGAAAGTGAGT
GGTATGAGCAGAAGCCGGAAGAGAATGTTGGAAAATACAATTGATGCTGA
GCAAGTTGTACACGATGGACTCTTTGAAGGACACGGTGGTAACTCAGATA
ATAGCGGTGGGAGTGGAGCGAAGATGCGTAGAGCTCTACGGTTCTCAATC
GAGCAGGACCGTATTCATGAGAAAGCACTGAAGCGGAACCGCACGGGAAG
TAGCAGCACTCGTGCTCTACCCACCACCAATCCGAGCGCAAACCAAGGCG
ATGCGGCAACCAACATTACAGAACCTCCATCTCATGTAGATCCACATGAG
GGGCAGCGTTTGAGACGTGGGTTGATTGAACGAGTAGAAGATGCTGAGCA
AGCGCCCGTTCATCACCAGCAGCATCAGCATGAACAGCATGAAGAGCAGC
ACGAGCCGCAGGATGCGCACAATGATCAGCAGGATCAGCAACAGCTGCAA
CAGAATCAGGAACAGCAGCATGAAGAACATCTGCGGGAAGAGCACGGAAT
GCAAGATGAAGtggtggctgaGTAA
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