Ggra1265.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1265.t1
Unique Name	Ggra1265.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	401

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000208_pilon	contig	tig00000208_pilon:114503..115705 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1265	Ggra1265	Gracilaria gracilis GNS1m male	gene	tig00000208_pilon 114503..115705 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1265.t1.start1	Ggra1265.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000208_pilon 114503..114505 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1265.t1.CDS1	Ggra1265.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000208_pilon 114503..115705 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1265.t1.exon1	Ggra1265.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000208_pilon 114503..115705 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1265.t1.stop1	Ggra1265.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000208_pilon 115703..115705 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1265.t1	Ggra1265.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000208_pilon 114503..115705 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000208_pilon:114503..115705+
coding sequence from alignment at tig00000208_pilon:114503..115705+

mRNA sequence

>Ggra1265.t1 ID=Ggra1265.t1|Name=Ggra1265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=401bp
MRRQMPQNTQKAIRHIGTVEVGVTALLDIFCMPDGDHSFRSIQSNYRRLS
LLVHPDRVRRFDKSTGARYMQVLSRAFELAKYGARYAVLTGEFDNFNDAV
IPWIAKFPRMPTAVENLVNLSEQCEKEKHEAEERARNASDSRRTEADKHA
EKGEETRRRAEQERQEQEERKRSEQQRLVRESRDDRSRTQTSHEDNNEEE
VSRAEGGTEDNADEQSAHTSSHQESSEISQTKHPQDCREDSEPCGVAENE
EDDKTSDCNSHQTMKETASSEDDWNASGSVHAKNPAGEIEHTIHEGSGTN
QGKTSNDEEVPHRGRRAEHVAQNGEEQAAEDETDGDRRDDGGVPDGLDDG
SMANLNLESVLGDPEFDMSEYISGFWAESDNANEPPGAPTQNVPSTTCTL
*

spliced messenger RNA

>Ggra1265.t1 ID=Ggra1265.t1|Name=Ggra1265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000208_pilon:114503..115705+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCCGGCAAATGCCACAAAACACGCAGAAGGCGATACGCCATATTGG
CACCGTTGAAGTTGGTGTTACAGCCCTCCTTGACATATTTTGCATGCCAG
ATGGAGATCATTCATTTCGATCAATCCAGAGCAACTATAGAAGGCTCTCC
CTTCTCGTACATCCAGACCGGGTTCGTCGCTTTGACAAAAGCACTGGCGC
ACGATACATGCAAGTTCTTTCGCGTGCGTTCGAACTTGCCAAATATGGAG
CACGGTACGCTGTACTAACGGGCGAGTTCGACAATTTTAATGATGCAGTG
ATTCCCTGGATTGCTAAGTTCCCTCGAATGCCAACAGCAGTTGAGAATCT
TGTTAATCTCTCTGAACAATGTGAAAAAGAGAAGCACGAAGCGGAGGAAA
GAGCCAGGAATGCTTCCGATAGCCGTAGAACCGAAGCTGACAAGCATGCA
GAGAAAGGTGAGGAGACTCGGAGGCGCGCTgagcaggagaggcaagagca
agaggaacgaaaaagatcagagcaaCAACGATTGGTACGAGAGAGCAGAG
ACGATCGCTCACGCACGCAGACATCTCATGAAGATAATAATGAAGAGGAA
GTTAGTCGAGCAGAGGGGGGTACCGAAGACAATGCTGATGAGCAAAGCGC
TCACACATCTAGCCACCAAGAGAGCAGCGAGATAAGCCAAACGAAACATC
CTCAGGATTGTAGGGAAGACTCCGAGCCTTGCGGGGTGGCTGAGAACGAG
GAAGATGACAAAACCTCGGACTGCAACAGCCACCAAACCATGAAAGAGAC
AGCATCAAGTGAAGACGATTGGAATGCATCTGGGTCAGTGCACGCAAAAA
ATCCTGCAGGCGAAATTGAGCACACAATTCACGAGGGGAGCGGAACCAAC
CAAGGAAAAACCTCAAATGACGAAGAAGTTCCACATCGTGGAAGAAGAGC
AGAGCATGTAGCTCAGAACGGGGAAGAGCAAGCAGCAGAGGACGAAACAG
ATGGTGATCGTAGAGATGACGGTGGAGTCCCTGACGGTTTGGATGATGGC
TCGATGGCGAACTTGAACTTGGAGAGTGTTTTGGGGGACCCTGAGTTTGA
CATGTCGGAGTACATTTCAGGATTTTGGGCTGAAAGTGACAACGCAAATG
AGCCCCCCGGTGCACCTACACAAAACGTCCCAAGCACTACCTGCACTTTG
TGA

protein sequence of Ggra1265.t1

>Ggra1265.t1 ID=Ggra1265.t1|Name=Ggra1265.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=401bp
MRRQMPQNTQKAIRHIGTVEVGVTALLDIFCMPDGDHSFRSIQSNYRRLS
LLVHPDRVRRFDKSTGARYMQVLSRAFELAKYGARYAVLTGEFDNFNDAV
IPWIAKFPRMPTAVENLVNLSEQCEKEKHEAEERARNASDSRRTEADKHA
EKGEETRRRAEQERQEQEERKRSEQQRLVRESRDDRSRTQTSHEDNNEEE
VSRAEGGTEDNADEQSAHTSSHQESSEISQTKHPQDCREDSEPCGVAENE
EDDKTSDCNSHQTMKETASSEDDWNASGSVHAKNPAGEIEHTIHEGSGTN
QGKTSNDEEVPHRGRRAEHVAQNGEEQAAEDETDGDRRDDGGVPDGLDDG
SMANLNLESVLGDPEFDMSEYISGFWAESDNANEPPGAPTQNVPSTTCTL
*

mRNA from alignment at tig00000208_pilon:114503..115705+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1265.t1 ID=Ggra1265.t1|Name=Ggra1265.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1203bp|location=Sequence derived from alignment at tig00000208_pilon:114503..115705+ (Gracilaria gracilis GNS1m male)
ATGCGCCGGCAAATGCCACAAAACACGCAGAAGGCGATACGCCATATTGG
CACCGTTGAAGTTGGTGTTACAGCCCTCCTTGACATATTTTGCATGCCAG
ATGGAGATCATTCATTTCGATCAATCCAGAGCAACTATAGAAGGCTCTCC
CTTCTCGTACATCCAGACCGGGTTCGTCGCTTTGACAAAAGCACTGGCGC
ACGATACATGCAAGTTCTTTCGCGTGCGTTCGAACTTGCCAAATATGGAG
CACGGTACGCTGTACTAACGGGCGAGTTCGACAATTTTAATGATGCAGTG
ATTCCCTGGATTGCTAAGTTCCCTCGAATGCCAACAGCAGTTGAGAATCT
TGTTAATCTCTCTGAACAATGTGAAAAAGAGAAGCACGAAGCGGAGGAAA
GAGCCAGGAATGCTTCCGATAGCCGTAGAACCGAAGCTGACAAGCATGCA
GAGAAAGGTGAGGAGACTCGGAGGCGCGCTgagcaggagaggcaagagca
agaggaacgaaaaagatcagagcaaCAACGATTGGTACGAGAGAGCAGAG
ACGATCGCTCACGCACGCAGACATCTCATGAAGATAATAATGAAGAGGAA
GTTAGTCGAGCAGAGGGGGGTACCGAAGACAATGCTGATGAGCAAAGCGC
TCACACATCTAGCCACCAAGAGAGCAGCGAGATAAGCCAAACGAAACATC
CTCAGGATTGTAGGGAAGACTCCGAGCCTTGCGGGGTGGCTGAGAACGAG
GAAGATGACAAAACCTCGGACTGCAACAGCCACCAAACCATGAAAGAGAC
AGCATCAAGTGAAGACGATTGGAATGCATCTGGGTCAGTGCACGCAAAAA
ATCCTGCAGGCGAAATTGAGCACACAATTCACGAGGGGAGCGGAACCAAC
CAAGGAAAAACCTCAAATGACGAAGAAGTTCCACATCGTGGAAGAAGAGC
AGAGCATGTAGCTCAGAACGGGGAAGAGCAAGCAGCAGAGGACGAAACAG
ATGGTGATCGTAGAGATGACGGTGGAGTCCCTGACGGTTTGGATGATGGC
TCGATGGCGAACTTGAACTTGGAGAGTGTTTTGGGGGACCCTGAGTTTGA
CATGTCGGAGTACATTTCAGGATTTTGGGCTGAAAGTGACAACGCAAATG
AGCCCCCCGGTGCACCTACACAAAACGTCCCAAGCACTACCTGCACTTTG
TGA

Coding sequence (CDS) from alignment at tig00000208_pilon:114503..115705+

>Ggra1265.t1 ID=Ggra1265.t1|Name=Ggra1265.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1203bp|location=Sequence derived from alignment at tig00000208_pilon:114503..115705+ (Gracilaria gracilis GNS1m male)
ATGCGCCGGCAAATGCCACAAAACACGCAGAAGGCGATACGCCATATTGG
CACCGTTGAAGTTGGTGTTACAGCCCTCCTTGACATATTTTGCATGCCAG
ATGGAGATCATTCATTTCGATCAATCCAGAGCAACTATAGAAGGCTCTCC
CTTCTCGTACATCCAGACCGGGTTCGTCGCTTTGACAAAAGCACTGGCGC
ACGATACATGCAAGTTCTTTCGCGTGCGTTCGAACTTGCCAAATATGGAG
CACGGTACGCTGTACTAACGGGCGAGTTCGACAATTTTAATGATGCAGTG
ATTCCCTGGATTGCTAAGTTCCCTCGAATGCCAACAGCAGTTGAGAATCT
TGTTAATCTCTCTGAACAATGTGAAAAAGAGAAGCACGAAGCGGAGGAAA
GAGCCAGGAATGCTTCCGATAGCCGTAGAACCGAAGCTGACAAGCATGCA
GAGAAAGGTGAGGAGACTCGGAGGCGCGCTgagcaggagaggcaagagca
agaggaacgaaaaagatcagagcaaCAACGATTGGTACGAGAGAGCAGAG
ACGATCGCTCACGCACGCAGACATCTCATGAAGATAATAATGAAGAGGAA
GTTAGTCGAGCAGAGGGGGGTACCGAAGACAATGCTGATGAGCAAAGCGC
TCACACATCTAGCCACCAAGAGAGCAGCGAGATAAGCCAAACGAAACATC
CTCAGGATTGTAGGGAAGACTCCGAGCCTTGCGGGGTGGCTGAGAACGAG
GAAGATGACAAAACCTCGGACTGCAACAGCCACCAAACCATGAAAGAGAC
AGCATCAAGTGAAGACGATTGGAATGCATCTGGGTCAGTGCACGCAAAAA
ATCCTGCAGGCGAAATTGAGCACACAATTCACGAGGGGAGCGGAACCAAC
CAAGGAAAAACCTCAAATGACGAAGAAGTTCCACATCGTGGAAGAAGAGC
AGAGCATGTAGCTCAGAACGGGGAAGAGCAAGCAGCAGAGGACGAAACAG
ATGGTGATCGTAGAGATGACGGTGGAGTCCCTGACGGTTTGGATGATGGC
TCGATGGCGAACTTGAACTTGGAGAGTGTTTTGGGGGACCCTGAGTTTGA
CATGTCGGAGTACATTTCAGGATTTTGGGCTGAAAGTGACAACGCAAATG
AGCCCCCCGGTGCACCTACACAAAACGTCCCAAGCACTACCTGCACTTTG
TGA