Ggra1261.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1261.t1
Unique NameGgra1261.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:60702..62294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1261Ggra1261Gracilaria gracilis GNS1m malegenetig00000208_pilon 60702..62294 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1Ggra1261.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 60702..62294 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1.start1Ggra1261.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 60702..60704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1.CDS1Ggra1261.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 60702..61542 +
Ggra1261.t1.CDS2Ggra1261.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000208_pilon 62056..62294 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1.exon1Ggra1261.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 60702..61542 +
Ggra1261.t1.exon2Ggra1261.t1.exon2Gracilaria gracilis GNS1m maleexontig00000208_pilon 62056..62294 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1.intron1Ggra1261.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000208_pilon 61543..62055 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1261.t1.stop1Ggra1261.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 62292..62294 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1261.t1 ID=Ggra1261.t1|Name=Ggra1261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MELRNTPERVAAKARRLSCSLSNPFPNYNQTNNHHVENLFDATTPSPNKL
CDAPQSAPPPVNVITVDIEKDIGPISARQNAVVNASTRRNSLASTECPEP
DSQPRTLDALFTFIVKTLKKEKLQSLCEKLGLVKRGTKLEGAYRIMIHAV
LCIFREKEVPHCFNDAELNTNFTRFLKENMTWEICPDVESLISKMPTVGE
RGKWKGKLRAAKFYAGQPWDTDNAAGEKSPSNVPGSLDHIDSVTRVPDFS
VNEFARLCILLRDDDQCRSAMKNSSCLELSLSKSSLHISEALTRNNEAVL
ADERDSRVHQKLELLCAELRNRRLDRNYEEDDAASNAESFLKEMSVKHIN
NLIDSLKED*
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spliced messenger RNA

>Ggra1261.t1 ID=Ggra1261.t1|Name=Ggra1261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000208_pilon:60702..62294+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTCCCCAATTACAACCAGACAAACAACC
ACCACGTAGAAAATCTTTTTGACGCGACGACTCCGTCTCCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGTTAACGTCATCACAGTAGA
CATTGAGAAAGATATTGGCCCGATTTCTGCACGTCAAAATGCAGTTGTTA
ATGCTTCGACGCGACGAAATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTCTCAACCACGCACCCTGGACGCCCTTTTCACGTTCATCGTGAAAAC
TCTAAAGAAAGAAAAGCTCCAGAGTCTTTGCGAGAAATTGGGTCTTGTCA
AACGAGGGACAAAGCTGGAGGGCGCGTACCGAATTATGATCCATGCCGTG
TTGTGCATATTCCGGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACCAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TATGTCCTGATGTCGAGTCTTTGATCAGTAAAATGCCAACCGTTGGCGAG
AGAGGAAAGTGGAAAGGAAAGCTACGGGCAGCAAAATTTTATGCTGGTCA
ACCATGGGACACGGATAACGCAGCTGGAGAAAAAAGCCCAAGTAATGTTC
CAGGCTCTTTGGATCACATTGACTCTGTCACTCGTGTTCCTGACTTTTCG
GTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAGATGATGACCAATG
TCGTTCTGCCATGAAGAATTCTTCGTGTTTGGAGCTTTCCCTCTCCAAAT
CATCTCTGCACATTTCTGAGGCTTTGACTAGAAATAACGAAGCCGTTCTT
GCAGACGAGAGAGACTCCAGAGTTCATCAGAAGCTCGAGCTTCTTTGCGC
AGAGCTTCGTAACCGACGTCTGGATAGGAACTATGAAGAGGACGACGCTG
CATCAAATGCAGAATCCTTTTTGAAGGAGATGTCTGTGAAGCACATTAAC
AATTTGATAGATAGTTTGAAGGAGGATTAA
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protein sequence of Ggra1261.t1

>Ggra1261.t1 ID=Ggra1261.t1|Name=Ggra1261.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MELRNTPERVAAKARRLSCSLSNPFPNYNQTNNHHVENLFDATTPSPNKL
CDAPQSAPPPVNVITVDIEKDIGPISARQNAVVNASTRRNSLASTECPEP
DSQPRTLDALFTFIVKTLKKEKLQSLCEKLGLVKRGTKLEGAYRIMIHAV
LCIFREKEVPHCFNDAELNTNFTRFLKENMTWEICPDVESLISKMPTVGE
RGKWKGKLRAAKFYAGQPWDTDNAAGEKSPSNVPGSLDHIDSVTRVPDFS
VNEFARLCILLRDDDQCRSAMKNSSCLELSLSKSSLHISEALTRNNEAVL
ADERDSRVHQKLELLCAELRNRRLDRNYEEDDAASNAESFLKEMSVKHIN
NLIDSLKED*
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mRNA from alignment at tig00000208_pilon:60702..62294+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1261.t1 ID=Ggra1261.t1|Name=Ggra1261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1593bp|location=Sequence derived from alignment at tig00000208_pilon:60702..62294+ (Gracilaria gracilis GNS1m male)
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTCCCCAATTACAACCAGACAAACAACC
ACCACGTAGAAAATCTTTTTGACGCGACGACTCCGTCTCCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGTTAACGTCATCACAGTAGA
CATTGAGAAAGATATTGGCCCGATTTCTGCACGTCAAAATGCAGTTGTTA
ATGCTTCGACGCGACGAAATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTCTCAACCACGCACCCTGGACGCCCTTTTCACGTTCATCGTGAAAAC
TCTAAAGAAAGAAAAGCTCCAGAGTCTTTGCGAGAAATTGGGTCTTGTCA
AACGAGGGACAAAGCTGGAGGGCGCGTACCGAATTATGATCCATGCCGTG
TTGTGCATATTCCGGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACCAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TATGTCCTGATGTCGAGTCTTTGATCAGTAAAATGCCAACCGTTGGCGAG
AGAGGAAAGTGGAAAGGAAAGCTACGGGCAGCAAAATTTTATGCTGGTCA
ACCATGGGACACGGATAACGCAGCTGGAGAAAAAAGCCCAAGTAATGTTC
CAGGCTCTTTGGATCACATTGACTCTGTCACTCGTGTTCCTGACTTTTCG
GTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAGATGATGACCAATG
TCGTTCTGCCATGAAGAATTCTTCGTGTTTGGAGCTTTCCCGTAAGCAAT
TGGACACTGGCGTAACTAGAGATACGTTCTGGGTAACAATTGAGACtcgt
tttaacgatcctactgtagttactacgaaggattttcgaggggttattga
cggcattgaatccaatgcttgtccgcttgcgcatcgcactgccgctctgc
tgaagtcgcattatcgagactcgagaaaggacttcactgaatattttaat
aagtggcagcagtcaggtcagattgatcctgaacgatttattgacttctt
gccaaagcatggcaatgttctttataattattcgaagcgttcgtacattt
tgttccatgtttgcagatgtgggacagcaaattctgacacagcattgttg
aacatagtgtcacggttggcgaaaaagggttcaggttatgaagctggagt
aattggcgatggcgaaagtgatggtgaaattgaaccgcaaaagaagaaaa
ggcgatcagctgactcgacgagttttaagaaccttgagaaTTGCCTTGCC
CAAGTCTCCAAATCATCTCTGCACATTTCTGAGGCTTTGACTAGAAATAA
CGAAGCCGTTCTTGCAGACGAGAGAGACTCCAGAGTTCATCAGAAGCTCG
AGCTTCTTTGCGCAGAGCTTCGTAACCGACGTCTGGATAGGAACTATGAA
GAGGACGACGCTGCATCAAATGCAGAATCCTTTTTGAAGGAGATGTCTGT
GAAGCACATTAACAATTTGATAGATAGTTTGAAGGAGGATTAA
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Coding sequence (CDS) from alignment at tig00000208_pilon:60702..62294+

>Ggra1261.t1 ID=Ggra1261.t1|Name=Ggra1261.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000208_pilon:60702..62294+ (Gracilaria gracilis GNS1m male)
ATGGAACTTCGAAATACTCCCGAGCGCGTTGCAGCCAAAGCCCGAAGATT
GTCTTGTTCACTTTCCAACCCGTTCCCCAATTACAACCAGACAAACAACC
ACCACGTAGAAAATCTTTTTGACGCGACGACTCCGTCTCCTAACAAACTC
TGCGACGCACCTCAATCCGCACCGCCTCCCGTTAACGTCATCACAGTAGA
CATTGAGAAAGATATTGGCCCGATTTCTGCACGTCAAAATGCAGTTGTTA
ATGCTTCGACGCGACGAAATTCTTTGGCATCTACCGAATGTCCGGAGCCT
GATTCTCAACCACGCACCCTGGACGCCCTTTTCACGTTCATCGTGAAAAC
TCTAAAGAAAGAAAAGCTCCAGAGTCTTTGCGAGAAATTGGGTCTTGTCA
AACGAGGGACAAAGCTGGAGGGCGCGTACCGAATTATGATCCATGCCGTG
TTGTGCATATTCCGGGAGAAAGAAGTACCGCATTGCTTTAATGACGCTGA
ATTGAACACAAACTTTACCAGGTTCTTAAAGGAAAATATGACTTGGGAAA
TATGTCCTGATGTCGAGTCTTTGATCAGTAAAATGCCAACCGTTGGCGAG
AGAGGAAAGTGGAAAGGAAAGCTACGGGCAGCAAAATTTTATGCTGGTCA
ACCATGGGACACGGATAACGCAGCTGGAGAAAAAAGCCCAAGTAATGTTC
CAGGCTCTTTGGATCACATTGACTCTGTCACTCGTGTTCCTGACTTTTCG
GTGAACGAGTTTGCTAGGTTGTGCATTCTATTGCGAGATGATGACCAATG
TCGTTCTGCCATGAAGAATTCTTCGTGTTTGGAGCTTTCCCTCTCCAAAT
CATCTCTGCACATTTCTGAGGCTTTGACTAGAAATAACGAAGCCGTTCTT
GCAGACGAGAGAGACTCCAGAGTTCATCAGAAGCTCGAGCTTCTTTGCGC
AGAGCTTCGTAACCGACGTCTGGATAGGAACTATGAAGAGGACGACGCTG
CATCAAATGCAGAATCCTTTTTGAAGGAGATGTCTGTGAAGCACATTAAC
AATTTGATAGATAGTTTGAAGGAGGATTAA
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