Ggra1224.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1224.t1
Unique NameGgra1224.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:160054..160779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1224Ggra1224Gracilaria gracilis GNS1m malegenetig00000926_pilon 160054..160779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1Ggra1224.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 160054..160779 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1.stop1Ggra1224.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 160054..160056 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1.CDS1Ggra1224.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 160054..160541 -
Ggra1224.t1.CDS2Ggra1224.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000926_pilon 160645..160679 -
Ggra1224.t1.CDS3Ggra1224.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000926_pilon 160736..160779 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1.exon1Ggra1224.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 160054..160541 -
Ggra1224.t1.exon2Ggra1224.t1.exon2Gracilaria gracilis GNS1m maleexontig00000926_pilon 160645..160679 -
Ggra1224.t1.exon3Ggra1224.t1.exon3Gracilaria gracilis GNS1m maleexontig00000926_pilon 160736..160779 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1.intron1Ggra1224.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000926_pilon 160542..160644 -
Ggra1224.t1.intron2Ggra1224.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000926_pilon 160680..160735 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1224.t1.start1Ggra1224.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 160777..160779 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1224.t1 ID=Ggra1224.t1|Name=Ggra1224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MSPPQPESPSPTCSSTPGYVLSHLPSPGLVIADLEISLVGGSTLAFVYAA
HIGSWNAAIRPTILLLWLPNIYTMELWHVDGRREARNFTSRGSDSADRDP
YKRAEEAVRRLFARASEEDGNAFLTWRDELVLALLSLKFVAFTQRELEWS
EAPERPPVQVIWTKLSRWEKGWNGRPGKWLRQWASFES*
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spliced messenger RNA

>Ggra1224.t1 ID=Ggra1224.t1|Name=Ggra1224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000926_pilon:160054..160779- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCCACCGCAACCCGAGTCTCCGAGCCCAACCTGTTCGAGTACGCC
TGGCTATGTTCTCTCACATCTCCCTTCTCCAGGTCTCGTTATAGCCGACC
TCGAAATCAGCCTTGTGGGTGGCTCAACACTCGCCTTCGTTTACGCCGCG
CACATAGGCTCCTGGAACGCAGCCATCCGCCCCACCATCCTGCTTCTCTG
GCTGCCCAACATATATACAATGGAACTCTGGCATGTCGACGGCAGGCGGG
AAGCCCGCAACTTCACCTCCCGCGGTAGCGATTCGGCCGATCGGGATCCA
TATAAACGTGCAGAGGAAGCCGTGCGACGCCTTTTCGCGCGCGCCAGCGA
GGAGGACGGCAATGCCTTTCTTACTTGGCGTGACGAGCTCGTGCTGGCCT
TACTCTCACTCAAGTTCGTCGCCTTCACTCAAAGAGAGTTGGAATGGAGC
GAAGCGCCCGAGAGGCCACCCGTCCAGGTCATCTGGACAAAGCTTTCCAG
GTGGGAAAAGGGCTGGAATGGACGACCTGGGAAGTGGCTCCGGCAGTGGG
CCTCTTTCGAGTCGTAA
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protein sequence of Ggra1224.t1

>Ggra1224.t1 ID=Ggra1224.t1|Name=Ggra1224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MSPPQPESPSPTCSSTPGYVLSHLPSPGLVIADLEISLVGGSTLAFVYAA
HIGSWNAAIRPTILLLWLPNIYTMELWHVDGRREARNFTSRGSDSADRDP
YKRAEEAVRRLFARASEEDGNAFLTWRDELVLALLSLKFVAFTQRELEWS
EAPERPPVQVIWTKLSRWEKGWNGRPGKWLRQWASFES*
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mRNA from alignment at tig00000926_pilon:160054..160779-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1224.t1 ID=Ggra1224.t1|Name=Ggra1224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=726bp|location=Sequence derived from alignment at tig00000926_pilon:160054..160779- (Gracilaria gracilis GNS1m male)
ATGTCTCCACCGCAACCCGAGTCTCCGAGCCCAACCTGTTCGAGGTATCC
GCGACTGTACCATAACAACTCGCATTGCCGCCTCCCCGCTGTTGTGCCAG
TACGCCTGGCTATGTTCTCTCACATCTCCCTTCTCGTAAGCAAAAACCTG
CACCTATTGGTATTCTTCCGCATCGCGCTCATGTCCTTAATAACATCCAA
GCTTCTTGCAATCCCGCTCGGCATAATCCTCTTACTAGCAGGTCTCGTTA
TAGCCGACCTCGAAATCAGCCTTGTGGGTGGCTCAACACTCGCCTTCGTT
TACGCCGCGCACATAGGCTCCTGGAACGCAGCCATCCGCCCCACCATCCT
GCTTCTCTGGCTGCCCAACATATATACAATGGAACTCTGGCATGTCGACG
GCAGGCGGGAAGCCCGCAACTTCACCTCCCGCGGTAGCGATTCGGCCGAT
CGGGATCCATATAAACGTGCAGAGGAAGCCGTGCGACGCCTTTTCGCGCG
CGCCAGCGAGGAGGACGGCAATGCCTTTCTTACTTGGCGTGACGAGCTCG
TGCTGGCCTTACTCTCACTCAAGTTCGTCGCCTTCACTCAAAGAGAGTTG
GAATGGAGCGAAGCGCCCGAGAGGCCACCCGTCCAGGTCATCTGGACAAA
GCTTTCCAGGTGGGAAAAGGGCTGGAATGGACGACCTGGGAAGTGGCTCC
GGCAGTGGGCCTCTTTCGAGTCGTAA
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Coding sequence (CDS) from alignment at tig00000926_pilon:160054..160779-

>Ggra1224.t1 ID=Ggra1224.t1|Name=Ggra1224.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000926_pilon:160054..160779- (Gracilaria gracilis GNS1m male)
ATGTCTCCACCGCAACCCGAGTCTCCGAGCCCAACCTGTTCGAGTACGCC
TGGCTATGTTCTCTCACATCTCCCTTCTCCAGGTCTCGTTATAGCCGACC
TCGAAATCAGCCTTGTGGGTGGCTCAACACTCGCCTTCGTTTACGCCGCG
CACATAGGCTCCTGGAACGCAGCCATCCGCCCCACCATCCTGCTTCTCTG
GCTGCCCAACATATATACAATGGAACTCTGGCATGTCGACGGCAGGCGGG
AAGCCCGCAACTTCACCTCCCGCGGTAGCGATTCGGCCGATCGGGATCCA
TATAAACGTGCAGAGGAAGCCGTGCGACGCCTTTTCGCGCGCGCCAGCGA
GGAGGACGGCAATGCCTTTCTTACTTGGCGTGACGAGCTCGTGCTGGCCT
TACTCTCACTCAAGTTCGTCGCCTTCACTCAAAGAGAGTTGGAATGGAGC
GAAGCGCCCGAGAGGCCACCCGTCCAGGTCATCTGGACAAAGCTTTCCAG
GTGGGAAAAGGGCTGGAATGGACGACCTGGGAAGTGGCTCCGGCAGTGGG
CCTCTTTCGAGTCGTAA
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