Ggra1222.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1222.t1
Unique NameGgra1222.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:145716..148484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog373994.Riv7116_4850
Preferred nameefeO
PFAMsCupredoxin_1,Peptidase_M75
Max annot lvl2|Bacteria
KEGG koko:K07224
KEGG TC2.A.108.2.3
Evalue7.99e-17
EggNOG OGsCOG2822@1|root,COG2822@2|Bacteria
Descriptioniron ion transport
COG categoryP
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1222Ggra1222Gracilaria gracilis GNS1m malegenetig00000926_pilon 145716..148484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1Ggra1222.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 145716..148484 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1.start1Ggra1222.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 145716..145718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1.CDS1Ggra1222.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 145716..146272 +
Ggra1222.t1.CDS2Ggra1222.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000926_pilon 147851..147932 +
Ggra1222.t1.CDS3Ggra1222.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000926_pilon 148044..148484 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1.exon1Ggra1222.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 145716..146272 +
Ggra1222.t1.exon2Ggra1222.t1.exon2Gracilaria gracilis GNS1m maleexontig00000926_pilon 147851..147932 +
Ggra1222.t1.exon3Ggra1222.t1.exon3Gracilaria gracilis GNS1m maleexontig00000926_pilon 148044..148484 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1.intron1Ggra1222.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000926_pilon 146273..147850 +
Ggra1222.t1.intron2Ggra1222.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000926_pilon 147933..148043 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1222.t1.stop1Ggra1222.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 148482..148484 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1222.t1 ID=Ggra1222.t1|Name=Ggra1222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=360bp
MKSFTLFFLLFTASLCLAFGSAVPTETDVEDECNVPAVVAYCLDLIHLGS
KYEFPTAEVEELKHDVEEAPFGMCPWGDWDGKASVEDCMQILSVYADLDE
EEEDVEIEMDPSGRIFKKIKKGLKKVGKKIKKGAKKVFKAGKKVFKGVKK
VVKKVAKFCSKNKEICEKAVEIGKKLLSGESGETRNAPEYERIEVLVADF
SQLDANIDARPYAGDVDRLCDTLQGGIDGEGTFSAKRVLGGMITLAYEVP
AKKISSEEETWSDLSILIFRENLKGLLDAAQAVLAPHAQADKQNRRSLKM
AYRLARDTLENVLDRGNDWDNGLNFKMYFNVPVYERKRISDNFYEMARAL
VAARTALFE*
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spliced messenger RNA

>Ggra1222.t1 ID=Ggra1222.t1|Name=Ggra1222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00000926_pilon:145716..148484+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTCTTTTACTCTTTTCTTCTTGTTGTTTACTGCTTCGCTCTGCCT
GGCCTTCGGCTCCGCTGTACCGACCGAAACGGATGTCGAGGATGAATGCA
ACGTTCCGGCGGTCGTCGCGTACTGCCTCGACCTGATTCACCTCGGCTCC
AAGTATGAGTTTCCCACCGCCGAAGTGGAAGAGTTGAAGCACGATGTCGA
AGAGGCGCCATTTGGAATGTGTCCGTGGGGTGATTGGGATGGCAAAGCAA
GCGTGGAGGATTGTATGCAAATCCTTTCCGTATATGCCGATCTGGACGAA
GAAGAGGAGGATGTAGAAATTGAGATGGACCCTAGCGGAAGGATCTTCAA
GAAGATCAAGAAGGGGTTGAAGAAGGTCGGCAAGAAGATAAAGAAGGGCG
CCAAGAAAGTGTTTAAGGCCGGCAAGAAAGTATTCAAGGGCGTGAAGAAG
GTGGTCAAGAAGGTAGCCAAGTTCTGCAGTAAGAACAAGGAAATCTGCGA
GAAGGCTGTCGAGATCGGAAAGAAGCTCCTTAGCGGTGAGAGTGGTGAGA
CCAGGAACGCGCCCGAGTATGAGCGTATCGAAGTGTTAGTGGCCGACTTT
TCGCAACTGGATGCTAACATTGACGCTCGTCCCTACGCGGGCGATGTGGA
CCGCCTTTGCGACACATTGCAAGGCGGAATCGACGGCGAAGGCACCTTCT
CTGCGAAGCGCGTTTTAGGCGGAATGATCACGCTGGCGTACGAAGTGCCT
GCCAAGAAAATCAGCTCCGAGGAGGAAACTTGGTCCGATCTGTCCATTCT
GATCTTCCGTGAGAACTTGAAAGGCCTTTTGGACGCTGCTCAAGCCGTTC
TTGCACCACATGCCCAAGCAGACAAGCAGAACAGAAGGAGCTTGAAAATG
GCTTATCGTCTCGCCAGAGACACCTTGGAGAACGTTCTGGATCGTGGCAA
TGACTGGGACAATGGGTTGAACTTCAAGATGTATTTCAACGTCCCTGTTT
ATGAAAGGAAGCGCATCTCGGATAACTTCTACGAGATGGCTCGTGCCCTC
GTGGCTGCGCGCACCGCTTTGTTCGAATAA
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protein sequence of Ggra1222.t1

>Ggra1222.t1 ID=Ggra1222.t1|Name=Ggra1222.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=360bp
MKSFTLFFLLFTASLCLAFGSAVPTETDVEDECNVPAVVAYCLDLIHLGS
KYEFPTAEVEELKHDVEEAPFGMCPWGDWDGKASVEDCMQILSVYADLDE
EEEDVEIEMDPSGRIFKKIKKGLKKVGKKIKKGAKKVFKAGKKVFKGVKK
VVKKVAKFCSKNKEICEKAVEIGKKLLSGESGETRNAPEYERIEVLVADF
SQLDANIDARPYAGDVDRLCDTLQGGIDGEGTFSAKRVLGGMITLAYEVP
AKKISSEEETWSDLSILIFRENLKGLLDAAQAVLAPHAQADKQNRRSLKM
AYRLARDTLENVLDRGNDWDNGLNFKMYFNVPVYERKRISDNFYEMARAL
VAARTALFE*
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mRNA from alignment at tig00000926_pilon:145716..148484+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1222.t1 ID=Ggra1222.t1|Name=Ggra1222.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2769bp|location=Sequence derived from alignment at tig00000926_pilon:145716..148484+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTTTTACTCTTTTCTTCTTGTTGTTTACTGCTTCGCTCTGCCT
GGCCTTCGGCTCCGCTGTACCGACCGAAACGGATGTCGAGGATGAATGCA
ACGTTCCGGCGGTCGTCGCGTACTGCCTCGACCTGATTCACCTCGGCTCC
AAGTATGAGTTTCCCACCGCCGAAGTGGAAGAGTTGAAGCACGATGTCGA
AGAGGCGCCATTTGGAATGTGTCCGTGGGGTGATTGGGATGGCAAAGCAA
GCGTGGAGGATTGTATGCAAATCCTTTCCGTATATGCCGATCTGGACGAA
GAAGAGGAGGATGTAGAAATTGAGATGGACCCTAGCGGAAGGATCTTCAA
GAAGATCAAGAAGGGGTTGAAGAAGGTCGGCAAGAAGATAAAGAAGGGCG
CCAAGAAAGTGTTTAAGGCCGGCAAGAAAGTATTCAAGGGCGTGAAGAAG
GTGGTCAAGAAGGTAGCCAAGTTCTGCAGTAAGAACAAGGAAATCTGCGA
GAAGGCTGTCGAGATCGGAAAGAAGCTCCTTAGCGGTGAGAGTGGTGAGA
CCAGGAAGTGAGGGAGGAATACTACCATGACCAGCACTGGGTAATAGGAT
AGGGGGGTATGAATTGCTTTCTGCCATACATCATGAGCGTGGGTGACTTC
TCTCCTGATTGTTGTTGAACCGTACGTTTCTAATTCAGGGTAGAAGCGCA
TCAAGGGGTTCTTATTTTGCTCATGATTTCATCTGTATATGCTATTGTGA
TAGTGCTCATTCAATGTAAAGGTTTTCATTGCATCATTCTGTTGGATGTG
ATCGTACATATCGTACTGGATAGCAAAGGTGCAGCTCTTTTAGTGGACTT
GGTGTTTGCCATTTGCTTATTAGGACCCTTTTAGAGCCACTTTTCTCCTA
TCTCTCTGCTACCACCACGACAGTATTGTGTGCATATTATATGCAAGGGA
CAGGGTGTGAAATACGTAGCTGAGCTCGTCATAATCTTATACATATTATG
CAAACGGGACAGGTTTCACCTGATAAAGAAAAGAAAGAAAGGCCAATGGT
TTGTTTGTTTTGTTGTTTATGAGACATGTACGCTTATTTGGTCGTATCCC
GTGAGACTGACAAAGGATGCGCCAACACTCTACAACTGCTTGGCTACAAA
CATAGCGCTTACGTACGGATCCATAGCAGCGTTACGGACATTGAGCAATT
ACACAGATATTGTTCTTTCTTCCACAACAGAGACCAACGAAAAGCTGGGA
AGATGTGACGTGGCGGTATATAATATAATGTACCTTTGTACCGTTTGTAG
TAAATTTAAATAATAGAAAAACTAAAGCACCAAGGGTGAAGGGCGACACG
CCCGACTTGGTTTCGTTCGGTTCGCGCCTACAAGTCAAAAGTGTGCGCTT
GTGCTCGCTCGGCGCGCCCGCAGCGTGTCGGCGCGCATCGCAGAGAAGAA
GCTTCTGTTCGGCATGGAGCGTCGAATCGGCTCGCGGTCGCACCCGCCAT
TCGTGCGGCTCACGCACGCGCTCCACACGTTTCATGCATGCCGTCGACCC
AGTCTTCGTCATGCAAAGCGTACCAAGTTGGTGCTACCAACGGTACCTAA
CGCGCGCGCTGCTTAGCGCCCGATTCCGCTTTTGTGGCGCCAACGCCCAG
GCTCGCATATTCAGGGGCGCCGCCTCGCCAATTGCTAACTCACATCATCT
CGCTAGCATTTGCTGCGTCCGTCGCTGTCCTTCGCGTGTCACCTTCAGCA
GGCGAGCATGACGCTCACTTTGCTCGGCTTTCATCTTTTGGGGCGCGCTA
TCTACAGGACAACCACTTTGCTACCGATAAGGGTGATGCGCGACCCTACA
GCGAGGTGACGGTCGCTTAGAGGAAGCTCATCATTAATTACAGCTACAGG
TTTGCCGTCGCACTCGAACACCTCAGAACGGACTTGAACGCGCAGTTCGC
TGAGGAGGAAGAAGAAGGCGATGAGCCAATGAGCGACATGGAAAAGACGT
TCATGAGAGAGCCGATCAGGGCTGGCTTGAGAGGATTCTTGCGTTTCTGC
GAAGAACAGCAGCAAAGCCTGGCCAAGCTGCGACACACGTTGAAGCAGCG
CAATATGAGCTCTGCCAAACGCGCGTACACTGAAGCGCGCCCGAGTATGA
GCGTATCGAAGTGTTAGTGGCCGACTTTTCGCAACTGGATGCTAACATTG
ACGCTCGTCCCTACGCGGTTGGTCGCGGTGAACTAGATGAGTAATGGAGG
GGATTCCATGCGGTCGAACGCGCCTTGTACCGAGATAATGACTTTGACGC
TGCGACCTGATACGCCGATGTGCTGAAGGGCGATGTGGACCGCCTTTGCG
ACACATTGCAAGGCGGAATCGACGGCGAAGGCACCTTCTCTGCGAAGCGC
GTTTTAGGCGGAATGATCACGCTGGCGTACGAAGTGCCTGCCAAGAAAAT
CAGCTCCGAGGAGGAAACTTGGTCCGATCTGTCCATTCTGATCTTCCGTG
AGAACTTGAAAGGCCTTTTGGACGCTGCTCAAGCCGTTCTTGCACCACAT
GCCCAAGCAGACAAGCAGAACAGAAGGAGCTTGAAAATGGCTTATCGTCT
CGCCAGAGACACCTTGGAGAACGTTCTGGATCGTGGCAATGACTGGGACA
ATGGGTTGAACTTCAAGATGTATTTCAACGTCCCTGTTTATGAAAGGAAG
CGCATCTCGGATAACTTCTACGAGATGGCTCGTGCCCTCGTGGCTGCGCG
CACCGCTTTGTTCGAATAA
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Coding sequence (CDS) from alignment at tig00000926_pilon:145716..148484+

>Ggra1222.t1 ID=Ggra1222.t1|Name=Ggra1222.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00000926_pilon:145716..148484+ (Gracilaria gracilis GNS1m male)
ATGAAGTCTTTTACTCTTTTCTTCTTGTTGTTTACTGCTTCGCTCTGCCT
GGCCTTCGGCTCCGCTGTACCGACCGAAACGGATGTCGAGGATGAATGCA
ACGTTCCGGCGGTCGTCGCGTACTGCCTCGACCTGATTCACCTCGGCTCC
AAGTATGAGTTTCCCACCGCCGAAGTGGAAGAGTTGAAGCACGATGTCGA
AGAGGCGCCATTTGGAATGTGTCCGTGGGGTGATTGGGATGGCAAAGCAA
GCGTGGAGGATTGTATGCAAATCCTTTCCGTATATGCCGATCTGGACGAA
GAAGAGGAGGATGTAGAAATTGAGATGGACCCTAGCGGAAGGATCTTCAA
GAAGATCAAGAAGGGGTTGAAGAAGGTCGGCAAGAAGATAAAGAAGGGCG
CCAAGAAAGTGTTTAAGGCCGGCAAGAAAGTATTCAAGGGCGTGAAGAAG
GTGGTCAAGAAGGTAGCCAAGTTCTGCAGTAAGAACAAGGAAATCTGCGA
GAAGGCTGTCGAGATCGGAAAGAAGCTCCTTAGCGGTGAGAGTGGTGAGA
CCAGGAACGCGCCCGAGTATGAGCGTATCGAAGTGTTAGTGGCCGACTTT
TCGCAACTGGATGCTAACATTGACGCTCGTCCCTACGCGGGCGATGTGGA
CCGCCTTTGCGACACATTGCAAGGCGGAATCGACGGCGAAGGCACCTTCT
CTGCGAAGCGCGTTTTAGGCGGAATGATCACGCTGGCGTACGAAGTGCCT
GCCAAGAAAATCAGCTCCGAGGAGGAAACTTGGTCCGATCTGTCCATTCT
GATCTTCCGTGAGAACTTGAAAGGCCTTTTGGACGCTGCTCAAGCCGTTC
TTGCACCACATGCCCAAGCAGACAAGCAGAACAGAAGGAGCTTGAAAATG
GCTTATCGTCTCGCCAGAGACACCTTGGAGAACGTTCTGGATCGTGGCAA
TGACTGGGACAATGGGTTGAACTTCAAGATGTATTTCAACGTCCCTGTTT
ATGAAAGGAAGCGCATCTCGGATAACTTCTACGAGATGGCTCGTGCCCTC
GTGGCTGCGCGCACCGCTTTGTTCGAATAA
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