Ggra1221.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1221.t1
Unique Name	Ggra1221.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	624

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000926_pilon	contig	tig00000926_pilon:142242..145602 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705580.1
PFAMs	MFS_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K15378
KEGG TC	2.A.2.4,2.A.2.6
Evalue	2.02e-123
EggNOG OGs	KOG0637@1\|root,KOG0637@2759\|Eukaryota
Description	sucrose transmembrane transporter activity
COG category	S
BRITE	ko00000,ko02000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1221	Ggra1221	Gracilaria gracilis GNS1m male	gene	tig00000926_pilon 142242..145602 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1	Ggra1221.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000926_pilon 142242..145602 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1.stop1	Ggra1221.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000926_pilon 142242..142244 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1.CDS1	Ggra1221.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000926_pilon 142242..144004 -
Ggra1221.t1.CDS2	Ggra1221.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000926_pilon 145494..145602 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1.exon1	Ggra1221.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000926_pilon 142242..144004 -
Ggra1221.t1.exon2	Ggra1221.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000926_pilon 145494..145602 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1.intron1	Ggra1221.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000926_pilon 144005..145493 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1221.t1.start1	Ggra1221.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000926_pilon 145600..145602 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000926_pilon:142242..145602-
coding sequence from alignment at tig00000926_pilon:142242..145602-

mRNA sequence

>Ggra1221.t1 ID=Ggra1221.t1|Name=Ggra1221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=624bp
MADQPPFIQHETPFIGSGSEAKNDVPDGLMIVFGVGAPAARLFTRTARRL
ALLPAATDAATDAATDAATDAATDAAAPKMGKPIVKAFSSPAIAKTYVET
PPMKQWRIAVCALAMAGIQVCYAAQINLGTAQLLLLGLNERAVSLAWLAG
PLSGLIVQPIVGHISDGCTHPLGRRRPFLIAGTIFTSCALLLFSHATQVA
HFLSGSPAPAFALALAICAFFALDFSIQAIQAPLRALITDVVPQPQRALA
NSYIGVFTGVGNLLGGLLAGMRLSSVLPFFSRDVEALFTLSALILVLTVA
ATVMNTHEQRLRPQRAVVLSDGRVHSAPLRSVSSSTSLLAPRLSHTHQSF
APGWRGAMQALKHIPRPFWQVFGVQLCTWCGFFTLFVYVNTWVGRNVFLG
DGTAPEGTDARTVFERGVRLGGKANALTALVTLAYSLLLPRLVQVCGIIP
IYALSQLVEAACLMAAVFIRGAPGQAYPSAMVRLAAMADIGLFGIVWATT
MSVPWTLIGNALESDHRYARRLGLFTTLFNASQSFPQLVVAFGAPLILRV
WQNDPAGVMFVGGICALLGAVLVVVLRVNVYGGDEVDEESVLAEEEEEEL
EIQRGYALRVSQSFSMDPFFSRS*

spliced messenger RNA

>Ggra1221.t1 ID=Ggra1221.t1|Name=Ggra1221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1872bp|location=Sequence derived from alignment at tig00000926_pilon:142242..145602- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGATCAACCCCCTTTTATACAGCATGAAACGCCCTTCATCGGCTC
AGGCTCAGAGGCTAAAAATGACGTTCCCGATGGTTTGATGATCGTTTTCG
GAGTTGGGGCACCGGCCGCGCGCCTCTTCACGCGCACCGCCCGCCGCCTC
GCGCTTCTCCCCGCCGCCACGGACGCCGCCACGGACGCCGCCACGGACGC
CGCCACGGACGCCGCCACGGACGCCGCCGCGCCCAAGATGGGCAAGCCCA
TCGTCAAGGCGTTCTCATCGCCCGCCATCGCCAAGACGTACGTCGAGACG
CCGCCCATGAAGCAGTGGCGCATCGCCGTCTGCGCGCTGGCCATGGCGGG
CATCCAGGTGTGCTACGCCGCGCAGATCAACCTCGGAACCGCGCAACTGC
TGCTGCTGGGTCTCAACGAGCGCGCCGTGTCGCTCGCCTGGTTGGCTGGT
CCCTTATCCGGCCTCATAGTGCAGCCCATCGTGGGGCACATCTCCGACGG
CTGCACGCATCCGCTTGGGCGACGACGCCCGTTCCTCATCGCCGGCACCA
TCTTCACGTCGTGTGCGCTGCTTCTGTTCTCACATGCCACGCAGGTGGCT
CACTTTCTGTCCGGCTCGCCCGCCCCAGCCTTCGCGCTGGCGTTGGCCAT
CTGCGCCTTCTTCGCGCTCGACTTTTCAATACAGGCCATCCAGGCGCCGC
TGCGCGCGCTCATCACCGACGTGGTACCGCAGCCGCAGCGCGCGCTCGCC
AACTCCTACATCGGCGTCTTCACCGGCGTGGGCAATCTTCTGGGCGGGCT
GTTGGCCGGCATGAGGCTCAGCTCCGTCCTACCGTTTTTCAGCCGTGATG
TGGAGGCGTTGTTCACTCTATCGGCTCTCATCCTGGTGCTCACCGTCGCC
GCCACCGTCATGAACACGCACGAGCAGCGGCTGCGCCCGCAGCGCGCGGT
GGTTCTGTCGGACGGACGCGTGCATAGCGCGCCGTTGCGCTCCGTGTCGT
CGTCCACGTCGCTGCTGGCGCCGCGCCTGTCGCACACGCACCAGTCGTTT
GCGCCGGGCTGGCGCGGCGCCATGCAGGCGTTGAAGCACATCCCGCGCCC
GTTTTGGCAGGTGTTTGGCGTGCAGCTTTGCACGTGGTGCGGCTTCTTCA
CGCTGTTTGTGTACGTCAACACCTGGGTGGGGCGCAACGTGTTCCTTGGC
GACGGCACGGCGCCGGAGGGCACCGATGCGCGCACGGTGTTCGAGCGCGG
CGTGAGACTGGGCGGCAAGGCAAATGCGTTGACGGCGCTCGTCACACTGG
CGTACTCGCTGCTGCTGCCCAGGTTGGTGCAAGTGTGCGGCATTATCCCG
ATCTACGCGCTGAGTCAGCTGGTGGAGGCGGCTTGCTTGATGGCGGCCGT
GTTCATCCGCGGCGCGCCGGGACAGGCGTATCCGTCGGCGATGGTGCGAC
TGGCAGCGATGGCGGATATCGGCTTGTTTGGCATTGTGTGGGCCACGACG
ATGAGCGTGCCGTGGACGCTGATCGGCAACGCGCTGGAGAGTGACCACCG
GTACGCGCGACGGCTCGGGCTGTTCACGACGCTGTTCAACGCGAGCCAGA
GTTTCCCGCAGCTGGTGGTGGCGTTCGGCGCGCCGCTGATCCTGCGCGTG
TGGCAGAACGACCCGGCGGGCGTCATGTTCGTGGGCGGCATCTGCGCGCT
GTTGGGCGCGGTGCTGGTAGTGGTGCTGCGCGTGAACGTGTACGGCGGCG
ATGAGGTGGATGAGGAGAGCGTGTTGGCGGAGGAGGAGGAGGAGGAGCTG
GAGATCCAACGCGGCTACGCGCTGCGCGTGAGCCAGTCATTCTCGATGGA
CCCGTTCTTCTCGCGGTCGTGA

protein sequence of Ggra1221.t1

>Ggra1221.t1 ID=Ggra1221.t1|Name=Ggra1221.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=624bp
MADQPPFIQHETPFIGSGSEAKNDVPDGLMIVFGVGAPAARLFTRTARRL
ALLPAATDAATDAATDAATDAATDAAAPKMGKPIVKAFSSPAIAKTYVET
PPMKQWRIAVCALAMAGIQVCYAAQINLGTAQLLLLGLNERAVSLAWLAG
PLSGLIVQPIVGHISDGCTHPLGRRRPFLIAGTIFTSCALLLFSHATQVA
HFLSGSPAPAFALALAICAFFALDFSIQAIQAPLRALITDVVPQPQRALA
NSYIGVFTGVGNLLGGLLAGMRLSSVLPFFSRDVEALFTLSALILVLTVA
ATVMNTHEQRLRPQRAVVLSDGRVHSAPLRSVSSSTSLLAPRLSHTHQSF
APGWRGAMQALKHIPRPFWQVFGVQLCTWCGFFTLFVYVNTWVGRNVFLG
DGTAPEGTDARTVFERGVRLGGKANALTALVTLAYSLLLPRLVQVCGIIP
IYALSQLVEAACLMAAVFIRGAPGQAYPSAMVRLAAMADIGLFGIVWATT
MSVPWTLIGNALESDHRYARRLGLFTTLFNASQSFPQLVVAFGAPLILRV
WQNDPAGVMFVGGICALLGAVLVVVLRVNVYGGDEVDEESVLAEEEEEEL
EIQRGYALRVSQSFSMDPFFSRS*

mRNA from alignment at tig00000926_pilon:142242..145602-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1221.t1 ID=Ggra1221.t1|Name=Ggra1221.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3361bp|location=Sequence derived from alignment at tig00000926_pilon:142242..145602- (Gracilaria gracilis GNS1m male)
ATGGCCGATCAACCCCCTTTTATACAGCATGAAACGCCCTTCATCGGCTC
AGGCTCAGAGGCTAAAAATGACGTTCCCGATGGTTTGATGATCGTTTTCG
GAGTTGGGGGTGCGTCTGTCTGTTCAAAGAAGTGCGATTGTGGTTGTTTG
GCAAGATGATCGGCATGAAACAACAATCGCGAAGCAATGAGAGTGACAAA
TCAGCGTGCTCCGCAGAAGTGATTATCAATCATGGCGACACAAAACAGTT
GTACTTGTGGGCATAACTACGTCACTATAGTGATTTAAAGGTGAGTATGA
ACAAAAACTTTATGACAGCTTGCAATAACAAGCAAATGAAGCAGCACTCG
AAGCACGGTAACAACTGGCATGTAAGAACGGCAAGCTTGCATTGTGATAT
GAGTTGGGGCACAAGACCAACAAGTACGAAGTGCTAAAATAAGAGATGTA
GAGGTTTGAACATGTTACATATGAGGGGTGCAGAACGAAGTGTAACAAGG
CACTGGAAAGTAAAGTTGGAAAGAAACATGAAGGGCACGAGTGCAACCGA
AGCAAATGAGTGTTTTGAACAGAAGATATATCGGAGATTCAATTTAGCAG
GAGGGGGAGATTGGGCTAATGGTTACGTGTTTCACGTTGACGTCGTTAGG
TACAAGAAGGCAATTATGCTGCACGTTTAGGTTTGGAGTTGGGCGTGGAG
AGTGTGAAAAGGTGTTCCAACAGGTGTTCAAGTTGGTTCATCAGCACCGT
CCATCAATGCGAAAAAGCGAGGCAGGACAGAGGAGCAGCGTTGGGCAAAC
GTGCGAACTGGTCGAGCCAGATAGAATATGGCATACAGGGGCGCATTTGC
AGGGTGATGCCGGGCCATTTTTTGAATTACGCTCGTAAGGCATGTGCCGG
TGGTGGAGCTGAGGTCAACAATGTTGTCATGTTGACAGCTTTGTGCGCGT
CGTGAACGGTTTTGACATTGATGCGGACTCGCTGAATTGCCTCGATGGCA
CATTGATTCACGTTATGGGCTAACATTGACAGTTGCGAGCTTGCGAGCGT
TTAGACGCGGCGACGCAGGGGAAGCACATGGGCGGCTCGGGGCAGGAATC
TGATGCGTGGTGAGCTGAGCAGCACCGGGAGAGAGGAGTCGTTGGGTTTC
ATGTTGGATTGTTGTGGTGGCGCAAGTGATACCAACGGTACAGGTAGCGT
TTTACCCTTGGTACCGTCGTACTTTGAGCACATGTGACGTTCCTAAAGTT
CAGCAGCAGCGCTTGTTGGACAGGCATAGAGTTGCAAACAATGGCCAACA
CATAGCGCGGTGCGTGTAGCTGGTGTGCACGTATTCCACGCGGCCGCGTG
GCCACGTCGCACAGCAGTGAAGCTTACACTATTGCATCTCACAAGTGGCG
AGATGCAGCGCGAGCGCCGTGACCAGAAGCAAAAGCGGCGCGCTGCTGCA
CGCCGCATGCGCGTGTGCCACCGCCGCCCACACACGTCGGCCGAATAGAT
ATCATATCATACCCTTGGTACTGAACATACGCCGCCGGCGCGCGGCGCGA
GTGCTCGGCCGCAACCGTCGCCCGTCGCGCCGCACCACGCGCACGCAGCA
CCGGCCGCGCGCCTCTTCACGCGCACCGCCCGCCGCCTCGCGCTTCTCCC
CGCCGCCACGGACGCCGCCACGGACGCCGCCACGGACGCCGCCACGGACG
CCGCCACGGACGCCGCCGCGCCCAAGATGGGCAAGCCCATCGTCAAGGCG
TTCTCATCGCCCGCCATCGCCAAGACGTACGTCGAGACGCCGCCCATGAA
GCAGTGGCGCATCGCCGTCTGCGCGCTGGCCATGGCGGGCATCCAGGTGT
GCTACGCCGCGCAGATCAACCTCGGAACCGCGCAACTGCTGCTGCTGGGT
CTCAACGAGCGCGCCGTGTCGCTCGCCTGGTTGGCTGGTCCCTTATCCGG
CCTCATAGTGCAGCCCATCGTGGGGCACATCTCCGACGGCTGCACGCATC
CGCTTGGGCGACGACGCCCGTTCCTCATCGCCGGCACCATCTTCACGTCG
TGTGCGCTGCTTCTGTTCTCACATGCCACGCAGGTGGCTCACTTTCTGTC
CGGCTCGCCCGCCCCAGCCTTCGCGCTGGCGTTGGCCATCTGCGCCTTCT
TCGCGCTCGACTTTTCAATACAGGCCATCCAGGCGCCGCTGCGCGCGCTC
ATCACCGACGTGGTACCGCAGCCGCAGCGCGCGCTCGCCAACTCCTACAT
CGGCGTCTTCACCGGCGTGGGCAATCTTCTGGGCGGGCTGTTGGCCGGCA
TGAGGCTCAGCTCCGTCCTACCGTTTTTCAGCCGTGATGTGGAGGCGTTG
TTCACTCTATCGGCTCTCATCCTGGTGCTCACCGTCGCCGCCACCGTCAT
GAACACGCACGAGCAGCGGCTGCGCCCGCAGCGCGCGGTGGTTCTGTCGG
ACGGACGCGTGCATAGCGCGCCGTTGCGCTCCGTGTCGTCGTCCACGTCG
CTGCTGGCGCCGCGCCTGTCGCACACGCACCAGTCGTTTGCGCCGGGCTG
GCGCGGCGCCATGCAGGCGTTGAAGCACATCCCGCGCCCGTTTTGGCAGG
TGTTTGGCGTGCAGCTTTGCACGTGGTGCGGCTTCTTCACGCTGTTTGTG
TACGTCAACACCTGGGTGGGGCGCAACGTGTTCCTTGGCGACGGCACGGC
GCCGGAGGGCACCGATGCGCGCACGGTGTTCGAGCGCGGCGTGAGACTGG
GCGGCAAGGCAAATGCGTTGACGGCGCTCGTCACACTGGCGTACTCGCTG
CTGCTGCCCAGGTTGGTGCAAGTGTGCGGCATTATCCCGATCTACGCGCT
GAGTCAGCTGGTGGAGGCGGCTTGCTTGATGGCGGCCGTGTTCATCCGCG
GCGCGCCGGGACAGGCGTATCCGTCGGCGATGGTGCGACTGGCAGCGATG
GCGGATATCGGCTTGTTTGGCATTGTGTGGGCCACGACGATGAGCGTGCC
GTGGACGCTGATCGGCAACGCGCTGGAGAGTGACCACCGGTACGCGCGAC
GGCTCGGGCTGTTCACGACGCTGTTCAACGCGAGCCAGAGTTTCCCGCAG
CTGGTGGTGGCGTTCGGCGCGCCGCTGATCCTGCGCGTGTGGCAGAACGA
CCCGGCGGGCGTCATGTTCGTGGGCGGCATCTGCGCGCTGTTGGGCGCGG
TGCTGGTAGTGGTGCTGCGCGTGAACGTGTACGGCGGCGATGAGGTGGAT
GAGGAGAGCGTGTTGGCGGAGGAGGAGGAGGAGGAGCTGGAGATCCAACG
CGGCTACGCGCTGCGCGTGAGCCAGTCATTCTCGATGGACCCGTTCTTCT
CGCGGTCGTGA

Coding sequence (CDS) from alignment at tig00000926_pilon:142242..145602-

>Ggra1221.t1 ID=Ggra1221.t1|Name=Ggra1221.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1872bp|location=Sequence derived from alignment at tig00000926_pilon:142242..145602- (Gracilaria gracilis GNS1m male)
ATGGCCGATCAACCCCCTTTTATACAGCATGAAACGCCCTTCATCGGCTC
AGGCTCAGAGGCTAAAAATGACGTTCCCGATGGTTTGATGATCGTTTTCG
GAGTTGGGGCACCGGCCGCGCGCCTCTTCACGCGCACCGCCCGCCGCCTC
GCGCTTCTCCCCGCCGCCACGGACGCCGCCACGGACGCCGCCACGGACGC
CGCCACGGACGCCGCCACGGACGCCGCCGCGCCCAAGATGGGCAAGCCCA
TCGTCAAGGCGTTCTCATCGCCCGCCATCGCCAAGACGTACGTCGAGACG
CCGCCCATGAAGCAGTGGCGCATCGCCGTCTGCGCGCTGGCCATGGCGGG
CATCCAGGTGTGCTACGCCGCGCAGATCAACCTCGGAACCGCGCAACTGC
TGCTGCTGGGTCTCAACGAGCGCGCCGTGTCGCTCGCCTGGTTGGCTGGT
CCCTTATCCGGCCTCATAGTGCAGCCCATCGTGGGGCACATCTCCGACGG
CTGCACGCATCCGCTTGGGCGACGACGCCCGTTCCTCATCGCCGGCACCA
TCTTCACGTCGTGTGCGCTGCTTCTGTTCTCACATGCCACGCAGGTGGCT
CACTTTCTGTCCGGCTCGCCCGCCCCAGCCTTCGCGCTGGCGTTGGCCAT
CTGCGCCTTCTTCGCGCTCGACTTTTCAATACAGGCCATCCAGGCGCCGC
TGCGCGCGCTCATCACCGACGTGGTACCGCAGCCGCAGCGCGCGCTCGCC
AACTCCTACATCGGCGTCTTCACCGGCGTGGGCAATCTTCTGGGCGGGCT
GTTGGCCGGCATGAGGCTCAGCTCCGTCCTACCGTTTTTCAGCCGTGATG
TGGAGGCGTTGTTCACTCTATCGGCTCTCATCCTGGTGCTCACCGTCGCC
GCCACCGTCATGAACACGCACGAGCAGCGGCTGCGCCCGCAGCGCGCGGT
GGTTCTGTCGGACGGACGCGTGCATAGCGCGCCGTTGCGCTCCGTGTCGT
CGTCCACGTCGCTGCTGGCGCCGCGCCTGTCGCACACGCACCAGTCGTTT
GCGCCGGGCTGGCGCGGCGCCATGCAGGCGTTGAAGCACATCCCGCGCCC
GTTTTGGCAGGTGTTTGGCGTGCAGCTTTGCACGTGGTGCGGCTTCTTCA
CGCTGTTTGTGTACGTCAACACCTGGGTGGGGCGCAACGTGTTCCTTGGC
GACGGCACGGCGCCGGAGGGCACCGATGCGCGCACGGTGTTCGAGCGCGG
CGTGAGACTGGGCGGCAAGGCAAATGCGTTGACGGCGCTCGTCACACTGG
CGTACTCGCTGCTGCTGCCCAGGTTGGTGCAAGTGTGCGGCATTATCCCG
ATCTACGCGCTGAGTCAGCTGGTGGAGGCGGCTTGCTTGATGGCGGCCGT
GTTCATCCGCGGCGCGCCGGGACAGGCGTATCCGTCGGCGATGGTGCGAC
TGGCAGCGATGGCGGATATCGGCTTGTTTGGCATTGTGTGGGCCACGACG
ATGAGCGTGCCGTGGACGCTGATCGGCAACGCGCTGGAGAGTGACCACCG
GTACGCGCGACGGCTCGGGCTGTTCACGACGCTGTTCAACGCGAGCCAGA
GTTTCCCGCAGCTGGTGGTGGCGTTCGGCGCGCCGCTGATCCTGCGCGTG
TGGCAGAACGACCCGGCGGGCGTCATGTTCGTGGGCGGCATCTGCGCGCT
GTTGGGCGCGGTGCTGGTAGTGGTGCTGCGCGTGAACGTGTACGGCGGCG
ATGAGGTGGATGAGGAGAGCGTGTTGGCGGAGGAGGAGGAGGAGGAGCTG
GAGATCCAACGCGGCTACGCGCTGCGCGTGAGCCAGTCATTCTCGATGGA
CCCGTTCTTCTCGCGGTCGTGA