Ggra1216.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1216.t1
Unique NameGgra1216.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length332
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:79864..80935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1216Ggra1216Gracilaria gracilis GNS1m malegenetig00000926_pilon 79864..80935 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1Ggra1216.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 79864..80935 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1.start1Ggra1216.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 79864..79866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1.CDS1Ggra1216.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 79864..80519 +
Ggra1216.t1.CDS2Ggra1216.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000926_pilon 80596..80935 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1.exon1Ggra1216.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 79864..80519 +
Ggra1216.t1.exon2Ggra1216.t1.exon2Gracilaria gracilis GNS1m maleexontig00000926_pilon 80596..80935 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1.intron1Ggra1216.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000926_pilon 80520..80595 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1216.t1.stop1Ggra1216.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 80933..80935 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1216.t1 ID=Ggra1216.t1|Name=Ggra1216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=332bp
MLAMWTYVGGQRELITNKTGVLQNNHQSYSRMLNHTWNSLQEVLEHPKKY
KDVIAAGTRLVRSKFTTQMFGKCVVHNLEGARRWKEKQMLRSREHWEDMN
VIQKGVDAVSDHVLDGVAVETVHGLYNRERVESSLERFMTIGVKTYVCDE
TIVCQVENLVHSIHAHYLKIRDVPTNDGPMLLGNEEVVRENPFTELHVPP
ADSESSVGRHHMLNATVSRGTHNGDVDIVGIRVRHLPSIDELDRIGIILP
IYVANMTSFNDREVTLCAWNENDGPSVYGIMHPIQVDVLHNACNYMQVRN
VQQPEDWTLPNTKHVMGRLAFVPPPTLKNGA*
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spliced messenger RNA

>Ggra1216.t1 ID=Ggra1216.t1|Name=Ggra1216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=996bp|location=Sequence derived from alignment at tig00000926_pilon:79864..80935+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCGATGTGGACGTATGTTGGAGGTCAGCGTGAATTAATCACGAA
TAAGACCGGTGTGCTGCAGAACAACCACCAGAGTTATTCAAGGATGCTGA
ATCACACTTGGAATAGTCTTCAGGAGGTTCTCGAGCACCCAAAGAAGTAC
AAGGACGTGATAGCTGCAGGGACGCGTCTTGTACGGAGCAAATTTACGAC
ACAAATGTTTGGGAAATGTGTGGTTCACAATCTAGAGGGGGCTCGGCGAT
GGAAAGAGAAACAAATGTTGCGGTCCCGGGAGCACTGGGAAGATATGAAC
GTGATTCAGAAAGGGGTGGATGCTGTATCGGATCACGTCTTAGACGGAGT
GGCAGTGGAAACAGTCCATGGTCTGTACAATCGTGAGCGTGTTGAAAGTT
CGCTTGAAAGATTTATGACGATTGGAGTCAAGACATATGTTTGTGATGAA
ACCATAGTCTGTCAAGTGGAAAACCTTGTTCATTCCATCCATGCACACTA
TCTTAAGATACGAGATGTCCCGACCAATGATGGGCCCATGCTGTTGGGCA
ACGAAGAGGTCGTGAGAGAAAATCCATTCACGGAGTTGCATGTACCTCCG
GCGGACAGTGAAAGTTCGGTTGGACGACACCACATGTTGAATGCAACAGT
TTCGCGGGGCACTCATAACGGAGATGTCGACATTGTCGGAATACGCGTTA
GACATCTACCGAGTATCGACGAATTAGATCGTATTGGCATTATCCTACCA
ATATATGTGGCAAATATGACGAGCTTCAACGACCGAGAAGTGACTCTTTG
CGCGTGGAACGAAAACGATGGTCCGAGTGTATACGGTATCATGCATCCGA
TCCAGGTCGATGTGCTTCACAACGCATGTAACTATATGCAGGTAAGAAAT
GTACAGCAACCTGAGGATTGGACTTTGCCGAACACCAAGCATGTGATGGG
GCGGTTGGCATTTGTACCTCCGCCAACTCTTAAGAATGGCGCTTGA
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protein sequence of Ggra1216.t1

>Ggra1216.t1 ID=Ggra1216.t1|Name=Ggra1216.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=332bp
MLAMWTYVGGQRELITNKTGVLQNNHQSYSRMLNHTWNSLQEVLEHPKKY
KDVIAAGTRLVRSKFTTQMFGKCVVHNLEGARRWKEKQMLRSREHWEDMN
VIQKGVDAVSDHVLDGVAVETVHGLYNRERVESSLERFMTIGVKTYVCDE
TIVCQVENLVHSIHAHYLKIRDVPTNDGPMLLGNEEVVRENPFTELHVPP
ADSESSVGRHHMLNATVSRGTHNGDVDIVGIRVRHLPSIDELDRIGIILP
IYVANMTSFNDREVTLCAWNENDGPSVYGIMHPIQVDVLHNACNYMQVRN
VQQPEDWTLPNTKHVMGRLAFVPPPTLKNGA*
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mRNA from alignment at tig00000926_pilon:79864..80935+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1216.t1 ID=Ggra1216.t1|Name=Ggra1216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1072bp|location=Sequence derived from alignment at tig00000926_pilon:79864..80935+ (Gracilaria gracilis GNS1m male)
ATGCTTGCGATGTGGACGTATGTTGGAGGTCAGCGTGAATTAATCACGAA
TAAGACCGGTGTGCTGCAGAACAACCACCAGAGTTATTCAAGGATGCTGA
ATCACACTTGGAATAGTCTTCAGGAGGTTCTCGAGCACCCAAAGAAGTAC
AAGGACGTGATAGCTGCAGGGACGCGTCTTGTACGGAGCAAATTTACGAC
ACAAATGTTTGGGAAATGTGTGGTTCACAATCTAGAGGGGGCTCGGCGAT
GGAAAGAGAAACAAATGTTGCGGTCCCGGGAGCACTGGGAAGATATGAAC
GTGATTCAGAAAGGGGTGGATGCTGTATCGGATCACGTCTTAGACGGAGT
GGCAGTGGAAACAGTCCATGGTCTGTACAATCGTGAGCGTGTTGAAAGTT
CGCTTGAAAGATTTATGACGATTGGAGTCAAGACATATGTTTGTGATGAA
ACCATAGTCTGTCAAGTGGAAAACCTTGTTCATTCCATCCATGCACACTA
TCTTAAGATACGAGATGTCCCGACCAATGATGGGCCCATGCTGTTGGGCA
ACGAAGAGGTCGTGAGAGAAAATCCATTCACGGAGTTGCATGTACCTCCG
GCGGACAGTGAAAGTTCGGTTGGACGACACCACATGTTGAATGCAACAGT
TTCGCGGTACTTACAGCTCTTGGATGACGACCATCATACATGATTTACTT
GACGACATAACGAACTTGACAATGCTGTTAAGGGGCACTCATAACGGAGA
TGTCGACATTGTCGGAATACGCGTTAGACATCTACCGAGTATCGACGAAT
TAGATCGTATTGGCATTATCCTACCAATATATGTGGCAAATATGACGAGC
TTCAACGACCGAGAAGTGACTCTTTGCGCGTGGAACGAAAACGATGGTCC
GAGTGTATACGGTATCATGCATCCGATCCAGGTCGATGTGCTTCACAACG
CATGTAACTATATGCAGGTAAGAAATGTACAGCAACCTGAGGATTGGACT
TTGCCGAACACCAAGCATGTGATGGGGCGGTTGGCATTTGTACCTCCGCC
AACTCTTAAGAATGGCGCTTGA
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Coding sequence (CDS) from alignment at tig00000926_pilon:79864..80935+

>Ggra1216.t1 ID=Ggra1216.t1|Name=Ggra1216.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=996bp|location=Sequence derived from alignment at tig00000926_pilon:79864..80935+ (Gracilaria gracilis GNS1m male)
ATGCTTGCGATGTGGACGTATGTTGGAGGTCAGCGTGAATTAATCACGAA
TAAGACCGGTGTGCTGCAGAACAACCACCAGAGTTATTCAAGGATGCTGA
ATCACACTTGGAATAGTCTTCAGGAGGTTCTCGAGCACCCAAAGAAGTAC
AAGGACGTGATAGCTGCAGGGACGCGTCTTGTACGGAGCAAATTTACGAC
ACAAATGTTTGGGAAATGTGTGGTTCACAATCTAGAGGGGGCTCGGCGAT
GGAAAGAGAAACAAATGTTGCGGTCCCGGGAGCACTGGGAAGATATGAAC
GTGATTCAGAAAGGGGTGGATGCTGTATCGGATCACGTCTTAGACGGAGT
GGCAGTGGAAACAGTCCATGGTCTGTACAATCGTGAGCGTGTTGAAAGTT
CGCTTGAAAGATTTATGACGATTGGAGTCAAGACATATGTTTGTGATGAA
ACCATAGTCTGTCAAGTGGAAAACCTTGTTCATTCCATCCATGCACACTA
TCTTAAGATACGAGATGTCCCGACCAATGATGGGCCCATGCTGTTGGGCA
ACGAAGAGGTCGTGAGAGAAAATCCATTCACGGAGTTGCATGTACCTCCG
GCGGACAGTGAAAGTTCGGTTGGACGACACCACATGTTGAATGCAACAGT
TTCGCGGGGCACTCATAACGGAGATGTCGACATTGTCGGAATACGCGTTA
GACATCTACCGAGTATCGACGAATTAGATCGTATTGGCATTATCCTACCA
ATATATGTGGCAAATATGACGAGCTTCAACGACCGAGAAGTGACTCTTTG
CGCGTGGAACGAAAACGATGGTCCGAGTGTATACGGTATCATGCATCCGA
TCCAGGTCGATGTGCTTCACAACGCATGTAACTATATGCAGGTAAGAAAT
GTACAGCAACCTGAGGATTGGACTTTGCCGAACACCAAGCATGTGATGGG
GCGGTTGGCATTTGTACCTCCGCCAACTCTTAAGAATGGCGCTTGA
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