Ggra1214.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1214.t1
Unique Name	Ggra1214.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	374

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000926_pilon	contig	tig00000926_pilon:41660..42781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1214	Ggra1214	Gracilaria gracilis GNS1m male	gene	tig00000926_pilon 41660..42781 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1214.t1.start1	Ggra1214.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000926_pilon 41660..41662 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1214.t1.CDS1	Ggra1214.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000926_pilon 41660..42781 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1214.t1.exon1	Ggra1214.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000926_pilon 41660..42781 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1214.t1.stop1	Ggra1214.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000926_pilon 42779..42781 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1214.t1	Ggra1214.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000926_pilon 41660..42781 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000926_pilon:41660..42781+
coding sequence from alignment at tig00000926_pilon:41660..42781+

mRNA sequence

>Ggra1214.t1 ID=Ggra1214.t1|Name=Ggra1214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MGVVENAIVLPDPTIGRTSKQSSSVSLGKALNEAIEIHNARINGEKQETI
RLEILEKPRAYSQKVMVTVERKICRSKLFKKYYGKVSYQTIMKETPRTQF
MEEVDRIISAVNEEHRLLAYTEGSWGARKALVTKLRIAAATNKNAGKERK
SKTRPTVQQKNRTKEKPNDINNATEEDMETSSDEDEVRPVIKGGRRSRIQ
PTVVRSKLSAEPRKRKAGDSFEGVEVTTKKPKILKQRRSLLLRKNTPMNS
LVGNGQKNAALNMKDKGTMKTGHGNARGRVTHSKTVRNATDVGHSPSSSP
ESDNVTAGIDSTPTRVCVIDGCVFNSPPTHRCKICEKPMHNLCGQRVLGK
DAIDGLFFCSISCIVQSVRNSNE*

spliced messenger RNA

>Ggra1214.t1 ID=Ggra1214.t1|Name=Ggra1214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000926_pilon:41660..42781+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTGTTGTCGAGAACGCGATTGTGCTGCCTGACCCAACTATTGGACG
CACATCGAAGCAGTCTAGCTCCGTTAGCCTTGGGAAGGCTCTCAATGAAG
CAATCGAGATTCACAACGCCCGAATAAACGGTGAGAAACAGGAAACCATC
CGTTTGGAGATACTTGAGAAACCCCGTGCGTACTCTCAGAAGGTGATGGT
GACTGTGGAGCGCAAGATTTGTCGAAGCAAATTGTTCAAGAAGTACTATG
GTAAAGTAAGTTATCAAACGATAATGAAAGAAACGCCGAGAACCCAGTTC
ATGGAGGAGGTTGATCGCATCATAAGTGCGGTAAACGAAGAACACAGATT
ACTGGCATACACCGAAGGAAGTTGGGGGGCACGTAAAGCGCTCGTTACAA
AACTGCGCATAGCCGCAGCTACAAACAAGAATGCAGGGAAGGAGAGAAAG
TCCAAAACGCGTCCCACTGTACAGCAGAAAAATCGTACGAAAGAGAAACC
TAATGATATCAATAACGCCACTGAAGAAGATATGGAAACATCAAGCGACG
AGGATGAAGTTCGACCTGTAATAAAAGGCGGTAGACGAAGCCGAATTCAA
CCCACTGTGGTGAGGTCTAAGTTGTCCGCAGAACCTAGAAAGCGAAAGGC
TGGGGACAGCTTTGAGGGCGTTGAAGTTACAACTAAGAAGCCCAAAATTT
TGAAACAGCGAAGAAGCCTTCTACTTCGAAAGAACACACCGATGAATTCA
TTGGTGGGAAATGGCCAGAAAAATGCAGCATTGAACATGAAAGACAAAGG
CACCATGAAGACCGGACACGGAAACGCTCGTGGTCGTGTTACGCATTCAA
AAACTGTTAGAAATGCAACAGATGTAGGTCATTCTCCATCCTCCAGTCCG
GAGTCTGACAATGTTACAGCAGGTATCGATTCGACACCCACCCGGGTTTG
CGTGATTGATGGTTGTGTTTTTAACTCGCCTCCGACGCATAGGTGCAAGA
TATGTGAAAAACCTATGCATAACCTGTGCGGGCAACGTGTTCTTGGAAAG
GATGCGATTGATGGGCTTTTCTTCTGTTCGATCTCGTGTATTGTTCAGAG
TGTTCGCAACTCTAATGAGTAA

protein sequence of Ggra1214.t1

>Ggra1214.t1 ID=Ggra1214.t1|Name=Ggra1214.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MGVVENAIVLPDPTIGRTSKQSSSVSLGKALNEAIEIHNARINGEKQETI
RLEILEKPRAYSQKVMVTVERKICRSKLFKKYYGKVSYQTIMKETPRTQF
MEEVDRIISAVNEEHRLLAYTEGSWGARKALVTKLRIAAATNKNAGKERK
SKTRPTVQQKNRTKEKPNDINNATEEDMETSSDEDEVRPVIKGGRRSRIQ
PTVVRSKLSAEPRKRKAGDSFEGVEVTTKKPKILKQRRSLLLRKNTPMNS
LVGNGQKNAALNMKDKGTMKTGHGNARGRVTHSKTVRNATDVGHSPSSSP
ESDNVTAGIDSTPTRVCVIDGCVFNSPPTHRCKICEKPMHNLCGQRVLGK
DAIDGLFFCSISCIVQSVRNSNE*

mRNA from alignment at tig00000926_pilon:41660..42781+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1214.t1 ID=Ggra1214.t1|Name=Ggra1214.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000926_pilon:41660..42781+ (Gracilaria gracilis GNS1m male)
ATGGGTGTTGTCGAGAACGCGATTGTGCTGCCTGACCCAACTATTGGACG
CACATCGAAGCAGTCTAGCTCCGTTAGCCTTGGGAAGGCTCTCAATGAAG
CAATCGAGATTCACAACGCCCGAATAAACGGTGAGAAACAGGAAACCATC
CGTTTGGAGATACTTGAGAAACCCCGTGCGTACTCTCAGAAGGTGATGGT
GACTGTGGAGCGCAAGATTTGTCGAAGCAAATTGTTCAAGAAGTACTATG
GTAAAGTAAGTTATCAAACGATAATGAAAGAAACGCCGAGAACCCAGTTC
ATGGAGGAGGTTGATCGCATCATAAGTGCGGTAAACGAAGAACACAGATT
ACTGGCATACACCGAAGGAAGTTGGGGGGCACGTAAAGCGCTCGTTACAA
AACTGCGCATAGCCGCAGCTACAAACAAGAATGCAGGGAAGGAGAGAAAG
TCCAAAACGCGTCCCACTGTACAGCAGAAAAATCGTACGAAAGAGAAACC
TAATGATATCAATAACGCCACTGAAGAAGATATGGAAACATCAAGCGACG
AGGATGAAGTTCGACCTGTAATAAAAGGCGGTAGACGAAGCCGAATTCAA
CCCACTGTGGTGAGGTCTAAGTTGTCCGCAGAACCTAGAAAGCGAAAGGC
TGGGGACAGCTTTGAGGGCGTTGAAGTTACAACTAAGAAGCCCAAAATTT
TGAAACAGCGAAGAAGCCTTCTACTTCGAAAGAACACACCGATGAATTCA
TTGGTGGGAAATGGCCAGAAAAATGCAGCATTGAACATGAAAGACAAAGG
CACCATGAAGACCGGACACGGAAACGCTCGTGGTCGTGTTACGCATTCAA
AAACTGTTAGAAATGCAACAGATGTAGGTCATTCTCCATCCTCCAGTCCG
GAGTCTGACAATGTTACAGCAGGTATCGATTCGACACCCACCCGGGTTTG
CGTGATTGATGGTTGTGTTTTTAACTCGCCTCCGACGCATAGGTGCAAGA
TATGTGAAAAACCTATGCATAACCTGTGCGGGCAACGTGTTCTTGGAAAG
GATGCGATTGATGGGCTTTTCTTCTGTTCGATCTCGTGTATTGTTCAGAG
TGTTCGCAACTCTAATGAGTAA

Coding sequence (CDS) from alignment at tig00000926_pilon:41660..42781+

>Ggra1214.t1 ID=Ggra1214.t1|Name=Ggra1214.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000926_pilon:41660..42781+ (Gracilaria gracilis GNS1m male)
ATGGGTGTTGTCGAGAACGCGATTGTGCTGCCTGACCCAACTATTGGACG
CACATCGAAGCAGTCTAGCTCCGTTAGCCTTGGGAAGGCTCTCAATGAAG
CAATCGAGATTCACAACGCCCGAATAAACGGTGAGAAACAGGAAACCATC
CGTTTGGAGATACTTGAGAAACCCCGTGCGTACTCTCAGAAGGTGATGGT
GACTGTGGAGCGCAAGATTTGTCGAAGCAAATTGTTCAAGAAGTACTATG
GTAAAGTAAGTTATCAAACGATAATGAAAGAAACGCCGAGAACCCAGTTC
ATGGAGGAGGTTGATCGCATCATAAGTGCGGTAAACGAAGAACACAGATT
ACTGGCATACACCGAAGGAAGTTGGGGGGCACGTAAAGCGCTCGTTACAA
AACTGCGCATAGCCGCAGCTACAAACAAGAATGCAGGGAAGGAGAGAAAG
TCCAAAACGCGTCCCACTGTACAGCAGAAAAATCGTACGAAAGAGAAACC
TAATGATATCAATAACGCCACTGAAGAAGATATGGAAACATCAAGCGACG
AGGATGAAGTTCGACCTGTAATAAAAGGCGGTAGACGAAGCCGAATTCAA
CCCACTGTGGTGAGGTCTAAGTTGTCCGCAGAACCTAGAAAGCGAAAGGC
TGGGGACAGCTTTGAGGGCGTTGAAGTTACAACTAAGAAGCCCAAAATTT
TGAAACAGCGAAGAAGCCTTCTACTTCGAAAGAACACACCGATGAATTCA
TTGGTGGGAAATGGCCAGAAAAATGCAGCATTGAACATGAAAGACAAAGG
CACCATGAAGACCGGACACGGAAACGCTCGTGGTCGTGTTACGCATTCAA
AAACTGTTAGAAATGCAACAGATGTAGGTCATTCTCCATCCTCCAGTCCG
GAGTCTGACAATGTTACAGCAGGTATCGATTCGACACCCACCCGGGTTTG
CGTGATTGATGGTTGTGTTTTTAACTCGCCTCCGACGCATAGGTGCAAGA
TATGTGAAAAACCTATGCATAACCTGTGCGGGCAACGTGTTCTTGGAAAG
GATGCGATTGATGGGCTTTTCTTCTGTTCGATCTCGTGTATTGTTCAGAG
TGTTCGCAACTCTAATGAGTAA