Ggra1213.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1213.t1
Unique NameGgra1213.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000926_piloncontigtig00000926_pilon:10928..11263 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1213Ggra1213Gracilaria gracilis GNS1m malegenetig00000926_pilon 10928..11263 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1213.t1.start1Ggra1213.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000926_pilon 10928..10930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1213.t1.CDS1Ggra1213.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000926_pilon 10928..11263 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1213.t1.exon1Ggra1213.t1.exon1Gracilaria gracilis GNS1m maleexontig00000926_pilon 10928..11263 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1213.t1.stop1Ggra1213.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000926_pilon 11261..11263 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1213.t1Ggra1213.t1Gracilaria gracilis GNS1m malepolypeptidetig00000926_pilon 10928..11263 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1213.t1 ID=Ggra1213.t1|Name=Ggra1213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=112bp
MVKLFSLPGTDPAMQTRFLQLTQMQALKRIELNVTAFDSIQEQVPSSREG
AVGASSEAALRTVLHESNDCDSTLNGISSQYDGKELVGPIAGSSREESEA
GNSLLCLSTDA*
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spliced messenger RNA

>Ggra1213.t1 ID=Ggra1213.t1|Name=Ggra1213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00000926_pilon:10928..11263+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTAAATTGTTTTCTTTGCCTGGTACGGACCCAGCTATGCAGACACG
GTTTCTGCAGCTCACGCAAATGCAGGCTCTCAAGAGGATTGAACTAAATG
TCACTGCTTTTGATTCAATTCAAGAGCAGGTCCCCTCATCTCGTGAAGGG
GCAGTTGGAGCTAGTTCTGAAGCAGCCCTTCGGACAGTGTTGCACGAATC
CAATGATTGTGATTCTACACTAAATGGTATTTCCTCCCAATACGATGGAA
AAGAATTGGTGGGCCCTATAGCAGGGTCTTCAAGGGAAGAAAGCGAGGCC
GGCAATTCTCTTTTGTGTTTATCGACTGATGCCTAA
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protein sequence of Ggra1213.t1

>Ggra1213.t1 ID=Ggra1213.t1|Name=Ggra1213.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MVKLFSLPGTDPAMQTRFLQLTQMQALKRIELNVTAFDSIQEQVPSSREG
AVGASSEAALRTVLHESNDCDSTLNGISSQYDGKELVGPIAGSSREESEA
GNSLLCLSTDA*
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mRNA from alignment at tig00000926_pilon:10928..11263+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1213.t1 ID=Ggra1213.t1|Name=Ggra1213.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=336bp|location=Sequence derived from alignment at tig00000926_pilon:10928..11263+ (Gracilaria gracilis GNS1m male)
ATGGTTAAATTGTTTTCTTTGCCTGGTACGGACCCAGCTATGCAGACACG
GTTTCTGCAGCTCACGCAAATGCAGGCTCTCAAGAGGATTGAACTAAATG
TCACTGCTTTTGATTCAATTCAAGAGCAGGTCCCCTCATCTCGTGAAGGG
GCAGTTGGAGCTAGTTCTGAAGCAGCCCTTCGGACAGTGTTGCACGAATC
CAATGATTGTGATTCTACACTAAATGGTATTTCCTCCCAATACGATGGAA
AAGAATTGGTGGGCCCTATAGCAGGGTCTTCAAGGGAAGAAAGCGAGGCC
GGCAATTCTCTTTTGTGTTTATCGACTGATGCCTAA
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Coding sequence (CDS) from alignment at tig00000926_pilon:10928..11263+

>Ggra1213.t1 ID=Ggra1213.t1|Name=Ggra1213.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=336bp|location=Sequence derived from alignment at tig00000926_pilon:10928..11263+ (Gracilaria gracilis GNS1m male)
ATGGTTAAATTGTTTTCTTTGCCTGGTACGGACCCAGCTATGCAGACACG
GTTTCTGCAGCTCACGCAAATGCAGGCTCTCAAGAGGATTGAACTAAATG
TCACTGCTTTTGATTCAATTCAAGAGCAGGTCCCCTCATCTCGTGAAGGG
GCAGTTGGAGCTAGTTCTGAAGCAGCCCTTCGGACAGTGTTGCACGAATC
CAATGATTGTGATTCTACACTAAATGGTATTTCCTCCCAATACGATGGAA
AAGAATTGGTGGGCCCTATAGCAGGGTCTTCAAGGGAAGAAAGCGAGGCC
GGCAATTCTCTTTTGTGTTTATCGACTGATGCCTAA
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