Ggra1206.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1206.t1
Unique NameGgra1206.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:307242..308885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709390.1
Preferred nameSNW1
PFAMsSKIP_SNW
Max annot lvl2759|Eukaryota
KEGG koko:K06063
KEGG Pathwayko03040,ko04330,ko05169,ko05203,map03040,map04330,map05169,map05203
KEGG ModuleM00355
GOsGO:0000003,GO:0000122,GO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000785,GO:0000974,GO:0001101,GO:0001700,GO:0002119,GO:0002164,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0003714,GO:0005102,GO:0005112,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005737,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007221,GO:0007275,GO:0007276,GO:0007281,GO:0007399,GO:0007444,GO:0007517,GO:0007519,GO:0007610,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008380,GO:0008593,GO:0008630,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009792,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010720,GO:0012501,GO:0014706,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0017015,GO:0018130,GO:0018991,GO:0019098,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030511,GO:0030522,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033120,GO:0033554,GO:0033993,GO:0034399,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035214,GO:0035257,GO:0035258,GO:0035295,GO:0035556,GO:0035821,GO:0035914,GO:0040011,GO:0040025,GO:0042221,GO:0042303,GO:0042771,GO:0042809,GO:0042974,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044703,GO:0045595,GO:0045597,GO:0045747,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046332,GO:0046483,GO:0046782,GO:0048024,GO:0048026,GO:0048384,GO:0048385,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048569,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050434,GO:0050681,GO:0050684,GO:0050685,GO:0050767,GO:0050769,GO:0050789,GO:0050792,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051254,GO:0051427,GO:0051569,GO:0051571,GO:0051702,GO:0051704,GO:0051716,GO:0051817,GO:0051851,GO:0051960,GO:0051962,GO:0052312,GO:0052472,GO:0060065,GO:0060255,GO:0060284,GO:0060429,GO:0060537,GO:0060538,GO:0061061,GO:0061458,GO:0065003,GO:0065007,GO:0070013,GO:0070562,GO:0070564,GO:0070887,GO:0071007,GO:0071013,GO:0071014,GO:0071141,GO:0071229,GO:0071300,GO:0071310,GO:0071396,GO:0071704,GO:0071826,GO:0071840,GO:0072331,GO:0072332,GO:0080090,GO:0090092,GO:0090100,GO:0090287,GO:0090304,GO:0097190,GO:0097193,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1901700,GO:1901701,GO:1902275,GO:1902494,GO:1902679,GO:1902680,GO:1903311,GO:1903313,GO:1903506,GO:1903507,GO:1903508,GO:1903844,GO:1903846,GO:1905269,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001252
Evalue1.62e-61
EggNOG OGsKOG2441@1|root,KOG2441@2759|Eukaryota
Descriptiongeneration of catalytic spliceosome for second transesterification step
COG categoryA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1206Ggra1206Gracilaria gracilis GNS1m malegenetig00000168_pilon 307242..308885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1Ggra1206.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 307242..308885 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1.start1Ggra1206.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 307242..307244 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1.CDS1Ggra1206.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 307242..307567 +
Ggra1206.t1.CDS2Ggra1206.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000168_pilon 307654..308575 +
Ggra1206.t1.CDS3Ggra1206.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000168_pilon 308658..308885 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1.exon1Ggra1206.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 307242..307567 +
Ggra1206.t1.exon2Ggra1206.t1.exon2Gracilaria gracilis GNS1m maleexontig00000168_pilon 307654..308575 +
Ggra1206.t1.exon3Ggra1206.t1.exon3Gracilaria gracilis GNS1m maleexontig00000168_pilon 308658..308885 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1.intron1Ggra1206.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000168_pilon 307568..307653 +
Ggra1206.t1.intron2Ggra1206.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000168_pilon 308576..308657 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1206.t1.stop1Ggra1206.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 308883..308885 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1206.t1 ID=Ggra1206.t1|Name=Ggra1206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MSLKSLLPSPTDVMVITAADLPSARALTVVPSQPSAQAGVSRVLSQPVST
DGPDYTAVVRQGENASRIVHTSYDALIEKPREEALRPMPTTLEIEQTARR
TRAGIEQVLATTGSRQRIIRMVEAPSDPMEPPKFSHRKAPLNPPSPRVPV
MHSPDRKPTKAEASEWKIPPVVSNWKNNRGYTIVLDKRLADDGRAQVDRF
INDIFAEMAEALYNAERVAREQVERRARLQRQVSLKAKEVKERELRELAE
KARRERKGYLGLSERTGVPSSAAPSGVHGFDVYSALGSAVPVEDEAPPLL
SGTKAPEVKKRQRRTRFGDRGQEDRSVDNDTLRRDEVRTQRRIQRERELR
GREEGNLDIGRQTLKRSKLTRDQDRDIAERVALGQSWTAKPVGEAMYDQR
LFNQEAGTSRRGGLSIFQYRTSLANDVDERERRFRADRGFGGGNDKEEAP
ASEGPRNKPVEFERDVPSKRVAGDDPYGMDRFLEEARNRGE*
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spliced messenger RNA

>Ggra1206.t1 ID=Ggra1206.t1|Name=Ggra1206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000168_pilon:307242..308885+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCTCAAGAGCTTGCTGCCGTCGCCCACGGACGTCATGGTCATCAC
GGCCGCCGACCTCCCGTCCGCACGCGCTCTCACTGTAGTGCCAAGCCAGC
CATCCGCTCAGGCAGGCGTCTCCCGCGTGCTTTCGCAGCCAGTCAGCACG
GATGGCCCCGACTACACCGCCGTCGTCCGCCAAGGCGAGAATGCCTCCAG
AATCGTGCATACATCTTACGATGCCTTAATCGAGAAACCGCGAGAGGAGG
CGCTCAGGCCCATGCCCACGACCCTCGAGATCGAGCAAACTGCCCGTCGC
ACCCGCGCCGGGATTGAACAGGTCCTCGCCACGACCGGCTCGCGGCAGCG
TATCATAAGAATGGTCGAAGCTCCATCCGATCCCATGGAGCCACCGAAGT
TCTCGCACCGCAAGGCTCCTTTAAACCCGCCGAGCCCTCGCGTCCCGGTT
ATGCACTCCCCTGATCGCAAGCCCACCAAGGCCGAGGCTTCCGAATGGAA
AATTCCACCAGTTGTATCGAACTGGAAGAACAACAGAGGATACACCATCG
TTCTTGATAAACGCTTAGCCGATGACGGTCGTGCACAAGTTGATCGCTTC
ATCAATGACATATTCGCGGAGATGGCAGAGGCGCTTTACAACGCTGAGCG
TGTTGCAAGGGAGCAAGTAGAACGACGGGCTCGACTGCAGCGTCAGGTGA
GTTTAAAGGCAAAAGAAGTCAAAGAACGAGAACTCCGTGAATTGGCAGAA
AAGGCCCGTCGGGAGCGAAAAGGTTATCTTGGTCTTTCCGAGAGAACGGG
TGTACCCAGTTCCGCCGCGCCATCGGGAGTGCATGGATTTGATGTATATT
CTGCGTTAGGGTCTGCGGTCCCTGTGGAAGATGAGGCTCCACCCCTTCTC
TCAGGTACTAAGGCTCCTGAGGTGAAAAAGAGGCAGCGGCGAACGCGATT
TGGTGATCGCGGTCAGGAAGACCGTAGCGTGGACAATGACACGCTGCGAA
GAGATGAGGTGAGAACGCAGCGACGCATTCAACGAGAGAGGGAGCTGCGT
GGAAGGGAAGAGGGCAATTTGGACATTGGTCGACAGACGCTGAAGCGATC
TAAATTGACTCGAGATCAGGATCGAGACATTGCCGAGCGCGTGGCTCTGG
GTCAATCTTGGACAGCAAAGCCAGTTGGGGAAGCTATGTACGATCAGCGC
TTATTCAACCAGGAAGCAGGGACTAGTAGAAGAGGTGGTTTATCAATTTT
TCAGTACCGGACATCGCTTGCAAATGATGTCGATGAACGAGAACGTCGAT
TTCGTGCTGATCGTGGGTTTGGGGGAGGCAATGATAAGGAAGAAGCCCCA
GCGTCTGAGGGACCACGGAACAAACCTGTTGAGTTTGAACGTGACGTTCC
TTCAAAACGGGTGGCTGGTGATGATCCATATGGTATGGACAGATTCTTAG
AAGAAGCTAGAAATCGGGGAGAGTAA
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protein sequence of Ggra1206.t1

>Ggra1206.t1 ID=Ggra1206.t1|Name=Ggra1206.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MSLKSLLPSPTDVMVITAADLPSARALTVVPSQPSAQAGVSRVLSQPVST
DGPDYTAVVRQGENASRIVHTSYDALIEKPREEALRPMPTTLEIEQTARR
TRAGIEQVLATTGSRQRIIRMVEAPSDPMEPPKFSHRKAPLNPPSPRVPV
MHSPDRKPTKAEASEWKIPPVVSNWKNNRGYTIVLDKRLADDGRAQVDRF
INDIFAEMAEALYNAERVAREQVERRARLQRQVSLKAKEVKERELRELAE
KARRERKGYLGLSERTGVPSSAAPSGVHGFDVYSALGSAVPVEDEAPPLL
SGTKAPEVKKRQRRTRFGDRGQEDRSVDNDTLRRDEVRTQRRIQRERELR
GREEGNLDIGRQTLKRSKLTRDQDRDIAERVALGQSWTAKPVGEAMYDQR
LFNQEAGTSRRGGLSIFQYRTSLANDVDERERRFRADRGFGGGNDKEEAP
ASEGPRNKPVEFERDVPSKRVAGDDPYGMDRFLEEARNRGE*
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mRNA from alignment at tig00000168_pilon:307242..308885+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1206.t1 ID=Ggra1206.t1|Name=Ggra1206.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1644bp|location=Sequence derived from alignment at tig00000168_pilon:307242..308885+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCAAGAGCTTGCTGCCGTCGCCCACGGACGTCATGGTCATCAC
GGCCGCCGACCTCCCGTCCGCACGCGCTCTCACTGTAGTGCCAAGCCAGC
CATCCGCTCAGGCAGGCGTCTCCCGCGTGCTTTCGCAGCCAGTCAGCACG
GATGGCCCCGACTACACCGCCGTCGTCCGCCAAGGCGAGAATGCCTCCAG
AATCGTGCATACATCTTACGATGCCTTAATCGAGAAACCGCGAGAGGAGG
CGCTCAGGCCCATGCCCACGACCCTCGAGATCGAGCAAACTGCCCGTCGC
ACCCGCGCCGGGATTGAACAGGTCCTGTCCGGGAGCTCGCCGCCAAGAGC
GGCAGCCAGGCCCAAAAGAAGCCTTCCTTCGTCCGCTACACGCCAGCGAA
CACGAACACCAGCGCCACGACCGGCTCGCGGCAGCGTATCATAAGAATGG
TCGAAGCTCCATCCGATCCCATGGAGCCACCGAAGTTCTCGCACCGCAAG
GCTCCTTTAAACCCGCCGAGCCCTCGCGTCCCGGTTATGCACTCCCCTGA
TCGCAAGCCCACCAAGGCCGAGGCTTCCGAATGGAAAATTCCACCAGTTG
TATCGAACTGGAAGAACAACAGAGGATACACCATCGTTCTTGATAAACGC
TTAGCCGATGACGGTCGTGCACAAGTTGATCGCTTCATCAATGACATATT
CGCGGAGATGGCAGAGGCGCTTTACAACGCTGAGCGTGTTGCAAGGGAGC
AAGTAGAACGACGGGCTCGACTGCAGCGTCAGGTGAGTTTAAAGGCAAAA
GAAGTCAAAGAACGAGAACTCCGTGAATTGGCAGAAAAGGCCCGTCGGGA
GCGAAAAGGTTATCTTGGTCTTTCCGAGAGAACGGGTGTACCCAGTTCCG
CCGCGCCATCGGGAGTGCATGGATTTGATGTATATTCTGCGTTAGGGTCT
GCGGTCCCTGTGGAAGATGAGGCTCCACCCCTTCTCTCAGGTACTAAGGC
TCCTGAGGTGAAAAAGAGGCAGCGGCGAACGCGATTTGGTGATCGCGGTC
AGGAAGACCGTAGCGTGGACAATGACACGCTGCGAAGAGATGAGGTGAGA
ACGCAGCGACGCATTCAACGAGAGAGGGAGCTGCGTGGAAGGGAAGAGGG
CAATTTGGACATTGGTCGACAGACGCTGAAGCGATCTAAATTGACTCGAG
ATCAGGATCGAGACATTGCCGAGCGCGTGGCTCTGGGTCAATCTTGGACA
GCAAAGCCAGTTGGGGAAGCTATGTACGATCAGCGCTTATTCAACCAGGA
AGCAGGGACTAGTAGAAGAGGTGGTTTATCAATTGTTGGAGGTTATGGCG
CGGACGATGCGTATCTACAACATATACGACAAATCTTTATTCGTTGGTTC
CAATTCGGCCGCCCAGTTTCAGTACCGGACATCGCTTGCAAATGATGTCG
ATGAACGAGAACGTCGATTTCGTGCTGATCGTGGGTTTGGGGGAGGCAAT
GATAAGGAAGAAGCCCCAGCGTCTGAGGGACCACGGAACAAACCTGTTGA
GTTTGAACGTGACGTTCCTTCAAAACGGGTGGCTGGTGATGATCCATATG
GTATGGACAGATTCTTAGAAGAAGCTAGAAATCGGGGAGAGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:307242..308885+

>Ggra1206.t1 ID=Ggra1206.t1|Name=Ggra1206.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000168_pilon:307242..308885+ (Gracilaria gracilis GNS1m male)
ATGTCGCTCAAGAGCTTGCTGCCGTCGCCCACGGACGTCATGGTCATCAC
GGCCGCCGACCTCCCGTCCGCACGCGCTCTCACTGTAGTGCCAAGCCAGC
CATCCGCTCAGGCAGGCGTCTCCCGCGTGCTTTCGCAGCCAGTCAGCACG
GATGGCCCCGACTACACCGCCGTCGTCCGCCAAGGCGAGAATGCCTCCAG
AATCGTGCATACATCTTACGATGCCTTAATCGAGAAACCGCGAGAGGAGG
CGCTCAGGCCCATGCCCACGACCCTCGAGATCGAGCAAACTGCCCGTCGC
ACCCGCGCCGGGATTGAACAGGTCCTCGCCACGACCGGCTCGCGGCAGCG
TATCATAAGAATGGTCGAAGCTCCATCCGATCCCATGGAGCCACCGAAGT
TCTCGCACCGCAAGGCTCCTTTAAACCCGCCGAGCCCTCGCGTCCCGGTT
ATGCACTCCCCTGATCGCAAGCCCACCAAGGCCGAGGCTTCCGAATGGAA
AATTCCACCAGTTGTATCGAACTGGAAGAACAACAGAGGATACACCATCG
TTCTTGATAAACGCTTAGCCGATGACGGTCGTGCACAAGTTGATCGCTTC
ATCAATGACATATTCGCGGAGATGGCAGAGGCGCTTTACAACGCTGAGCG
TGTTGCAAGGGAGCAAGTAGAACGACGGGCTCGACTGCAGCGTCAGGTGA
GTTTAAAGGCAAAAGAAGTCAAAGAACGAGAACTCCGTGAATTGGCAGAA
AAGGCCCGTCGGGAGCGAAAAGGTTATCTTGGTCTTTCCGAGAGAACGGG
TGTACCCAGTTCCGCCGCGCCATCGGGAGTGCATGGATTTGATGTATATT
CTGCGTTAGGGTCTGCGGTCCCTGTGGAAGATGAGGCTCCACCCCTTCTC
TCAGGTACTAAGGCTCCTGAGGTGAAAAAGAGGCAGCGGCGAACGCGATT
TGGTGATCGCGGTCAGGAAGACCGTAGCGTGGACAATGACACGCTGCGAA
GAGATGAGGTGAGAACGCAGCGACGCATTCAACGAGAGAGGGAGCTGCGT
GGAAGGGAAGAGGGCAATTTGGACATTGGTCGACAGACGCTGAAGCGATC
TAAATTGACTCGAGATCAGGATCGAGACATTGCCGAGCGCGTGGCTCTGG
GTCAATCTTGGACAGCAAAGCCAGTTGGGGAAGCTATGTACGATCAGCGC
TTATTCAACCAGGAAGCAGGGACTAGTAGAAGAGGTGGTTTATCAATTTT
TCAGTACCGGACATCGCTTGCAAATGATGTCGATGAACGAGAACGTCGAT
TTCGTGCTGATCGTGGGTTTGGGGGAGGCAATGATAAGGAAGAAGCCCCA
GCGTCTGAGGGACCACGGAACAAACCTGTTGAGTTTGAACGTGACGTTCC
TTCAAAACGGGTGGCTGGTGATGATCCATATGGTATGGACAGATTCTTAG
AAGAAGCTAGAAATCGGGGAGAGTAA
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