Ggra1201.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1201.t1
Unique NameGgra1201.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length99
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:111897..112193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703826.1
PFAMsEF-hand_5,EF-hand_7,EF-hand_8
Max annot lvl2759|Eukaryota
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue6.15e-29
EggNOG OGsKOG2562@1|root,KOG2562@2759|Eukaryota
Descriptionpositive regulation of B cell differentiation
COG categoryL
BRITEko00000,ko00001,ko01009,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1201Ggra1201Gracilaria gracilis GNS1m malegenetig00000168_pilon 111897..112193 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1201.t1.start1Ggra1201.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 111897..111899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1201.t1.CDS1Ggra1201.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 111897..112193 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1201.t1.exon1Ggra1201.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 111897..112193 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1201.t1.stop1Ggra1201.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 112191..112193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1201.t1Ggra1201.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 111897..112193 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1201.t1 ID=Ggra1201.t1|Name=Ggra1201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=99bp
MIKPNVRPPVIRSKDLKRCRLAGNFFNVLFNLKKFFAIEARDPLQIRQEH
ATPELTDLDRFAALEYLRLSEEEEKGEKESWEEVGDVANPLMAGEDPF*
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spliced messenger RNA

>Ggra1201.t1 ID=Ggra1201.t1|Name=Ggra1201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00000168_pilon:111897..112193+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCAAACCCAATGTACGACCACCTGTGATTAGGAGCAAGGATCTCAA
ACGGTGTCGCCTAGCCGGTAACTTTTTCAACGTTTTGTTCAACCTCAAAA
AGTTTTTCGCCATTGAGGCTAGGGATCCATTGCAAATAAGACAAGAACAT
GCGACCCCAGAGCTCACTGACTTGGACCGCTTTGCTGCGTTGGAATACCT
TAGGCTAAGTGAAGAGGAAGAAAAAGGGGAAAAAGAATCTTGGGAAGAAG
TCGGCGACGTTGCGAATCCACTAATGGCTGGCGAGGACCCATTCTAa
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protein sequence of Ggra1201.t1

>Ggra1201.t1 ID=Ggra1201.t1|Name=Ggra1201.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=99bp
MIKPNVRPPVIRSKDLKRCRLAGNFFNVLFNLKKFFAIEARDPLQIRQEH
ATPELTDLDRFAALEYLRLSEEEEKGEKESWEEVGDVANPLMAGEDPF*
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mRNA from alignment at tig00000168_pilon:111897..112193+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1201.t1 ID=Ggra1201.t1|Name=Ggra1201.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp|location=Sequence derived from alignment at tig00000168_pilon:111897..112193+ (Gracilaria gracilis GNS1m male)
ATGATCAAACCCAATGTACGACCACCTGTGATTAGGAGCAAGGATCTCAA
ACGGTGTCGCCTAGCCGGTAACTTTTTCAACGTTTTGTTCAACCTCAAAA
AGTTTTTCGCCATTGAGGCTAGGGATCCATTGCAAATAAGACAAGAACAT
GCGACCCCAGAGCTCACTGACTTGGACCGCTTTGCTGCGTTGGAATACCT
TAGGCTAAGTGAAGAGGAAGAAAAAGGGGAAAAAGAATCTTGGGAAGAAG
TCGGCGACGTTGCGAATCCACTAATGGCTGGCGAGGACCCATTCTAa
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Coding sequence (CDS) from alignment at tig00000168_pilon:111897..112193+

>Ggra1201.t1 ID=Ggra1201.t1|Name=Ggra1201.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=297bp|location=Sequence derived from alignment at tig00000168_pilon:111897..112193+ (Gracilaria gracilis GNS1m male)
ATGATCAAACCCAATGTACGACCACCTGTGATTAGGAGCAAGGATCTCAA
ACGGTGTCGCCTAGCCGGTAACTTTTTCAACGTTTTGTTCAACCTCAAAA
AGTTTTTCGCCATTGAGGCTAGGGATCCATTGCAAATAAGACAAGAACAT
GCGACCCCAGAGCTCACTGACTTGGACCGCTTTGCTGCGTTGGAATACCT
TAGGCTAAGTGAAGAGGAAGAAAAAGGGGAAAAAGAATCTTGGGAAGAAG
TCGGCGACGTTGCGAATCCACTAATGGCTGGCGAGGACCCATTCTAa
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