Ggra1199.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1199.t1
Unique NameGgra1199.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:66140..67365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog71139.XP_010069478.1
PFAMsDNA_pol_E_B,Dpoe2NT
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K02325
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
GOsGO:0000003,GO:0000228,GO:0000731,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008622,GO:0009058,GO:0009059,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0018130,GO:0019438,GO:0019899,GO:0019985,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0048316,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051302,GO:0051716,GO:0051781,GO:0061458,GO:0061695,GO:0065007,GO:0070013,GO:0070182,GO:0071704,GO:0071897,GO:0090304,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue1.59e-67
EggNOG OGsKOG3818@1|root,KOG3818@2759|Eukaryota,37SA8@33090|Viridiplantae,3G7UX@35493|Streptophyta
EC2.7.7.7
DescriptionParticipates in DNA repair and in chromosomal DNA replication
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1199Ggra1199Gracilaria gracilis GNS1m malegenetig00000168_pilon 66140..67365 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1Ggra1199.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 66140..67365 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1.start1Ggra1199.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 66140..66142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1.CDS1Ggra1199.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 66140..66236 +
Ggra1199.t1.CDS2Ggra1199.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000168_pilon 66326..67365 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1.exon1Ggra1199.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 66140..66236 +
Ggra1199.t1.exon2Ggra1199.t1.exon2Gracilaria gracilis GNS1m maleexontig00000168_pilon 66326..67365 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1.intron1Ggra1199.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000168_pilon 66237..66325 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1199.t1.stop1Ggra1199.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 67363..67365 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1199.t1 ID=Ggra1199.t1|Name=Ggra1199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=379bp
MFRSRYDVMLNKPLEDPKLKLLMSELQSVSRSRIWYLEDLNVKADLSETF
VTSGMHTEASFVIAQGQVTERKGEEPIFKGQEIETPPCESREDTIMALGR
DANPFGGHFDMSETSDLLKIEEQSLETVFLFVSDVALDNSRVFAGLRHIW
KPFLEDGVVPSVIVLMGNFLSHRFGEKPDDVSTLCEKLGELGAMVKDEFK
ELIDKTTFVIVPGPNDPGPGNVLPRPPMPQMITKRFVEAVGSENVHLATN
PCQIRFITQEIVILREDLMQKMIRHCAVKPDLTEAALMHTHLVKTVSDQK
YLTPLPLSARPVLWAHDHGLWLFPTPHVIVLADKVDSYICTYERNLGMNP
GSFKTDFSFLVYLPAEKRAQQSSLTVKT*
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spliced messenger RNA

>Ggra1199.t1 ID=Ggra1199.t1|Name=Ggra1199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000168_pilon:66140..67365+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCCGCTCGCGATACGATGTTATGCTCAATAAACCCCTTGAGGATCC
CAAATTGAAGCTACTAATGAGCGAGTTGCAATCGGTCTCCCGGTCTAGGA
TCTGGTACTTAGAGGACCTCAACGTCAAGGCAGACCTGTCCGAGACCTTT
GTGACTTCTGGTATGCATACGGAAGCCAGTTTTGTCATAGCTCAAGGGCA
AGTTACAGAACGCAAAGGGGAAGAGCCAATATTCAAGGGTCAAGAAATAG
AAACCCCTCCTTGTGAGTCCCGCGAGGATACCATCATGGCACTTGGACGA
GACGCCAATCCGTTTGGTGGTCATTTTGATATGAGTGAGACGTCAGATCT
TCTAAAGATTGAAGAGCAGAGCTTAGAGACGGTTTTTCTTTTCGTTTCAG
ACGTCGCTTTAGACAATTCTCGAGTCTTTGCTGGTTTGCGACATATCTGG
AAACCGTTTCTTGAAGATGGTGTCGTTCCTTCTGTAATAGTTCTCATGGG
TAACTTTCTTTCCCACCGCTTTGGGGAAAAACCAGACGACGTGTCAACTC
TATGCGAGAAACTCGGAGAGCTGGGTGCCATGGTCAAAGACGAGTTTAAA
GAACTAATTGACAAAACCACCTTTGTCATAGTCCCGGGACCAAACGACCC
AGGACCAGGAAATGTATTGCCGCGACCTCCGATGCCGCAGATGATCACTA
AACGATTCGTGGAAGCTGTGGGTTCTGAAAACGTCCACCTTGCTACAAAT
CCTTGTCAAATTCGATTTATTACCCAAGAGATTGTTATTCTAAGAGAAGA
TCTCATGCAGAAGATGATTCGTCATTGCGCCGTAAAACCTGATCTGACGG
AAGCTGCATTGATGCATACTCATTTAGTGAAAACGGTTAGCGACCAGAAA
TACTTGACTCCGCTTCCACTCTCTGCAAGGCCAGTCCTCTGGGCTCATGA
TCATGGCCTCTGGCTTTTCCCTACACCACACGTTATAGTTCTCGCAGACA
AGGTTGACAGCTACATATGCACGTACGAGAGAAACCTTGGCATGAACCCA
GGTTCTTTCAAAACTGACTTCTCTTTCCTAGTCTACCTTCCAGCTGAGAA
ACGAGCGCAACAAAGCTCCCTGACAGTGAAGACATAA
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protein sequence of Ggra1199.t1

>Ggra1199.t1 ID=Ggra1199.t1|Name=Ggra1199.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=379bp
MFRSRYDVMLNKPLEDPKLKLLMSELQSVSRSRIWYLEDLNVKADLSETF
VTSGMHTEASFVIAQGQVTERKGEEPIFKGQEIETPPCESREDTIMALGR
DANPFGGHFDMSETSDLLKIEEQSLETVFLFVSDVALDNSRVFAGLRHIW
KPFLEDGVVPSVIVLMGNFLSHRFGEKPDDVSTLCEKLGELGAMVKDEFK
ELIDKTTFVIVPGPNDPGPGNVLPRPPMPQMITKRFVEAVGSENVHLATN
PCQIRFITQEIVILREDLMQKMIRHCAVKPDLTEAALMHTHLVKTVSDQK
YLTPLPLSARPVLWAHDHGLWLFPTPHVIVLADKVDSYICTYERNLGMNP
GSFKTDFSFLVYLPAEKRAQQSSLTVKT*
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mRNA from alignment at tig00000168_pilon:66140..67365+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1199.t1 ID=Ggra1199.t1|Name=Ggra1199.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1226bp|location=Sequence derived from alignment at tig00000168_pilon:66140..67365+ (Gracilaria gracilis GNS1m male)
ATGTTCCGCTCGCGATACGATGTTATGCTCAATAAACCCCTTGAGGATCC
CAAATTGAAGCTACTAATGAGCGAGTTGCAATCGGTCTCCCGGTCTAGTC
CATACTTTCAGCTAACGGAAATCGAAAGCCTGTCACTTTCAAAAGAGATC
AGTTAGTGCATGGCGTTTTCACTCCATGTCAAGAAGGGATCTGGTACTTA
GAGGACCTCAACGTCAAGGCAGACCTGTCCGAGACCTTTGTGACTTCTGG
TATGCATACGGAAGCCAGTTTTGTCATAGCTCAAGGGCAAGTTACAGAAC
GCAAAGGGGAAGAGCCAATATTCAAGGGTCAAGAAATAGAAACCCCTCCT
TGTGAGTCCCGCGAGGATACCATCATGGCACTTGGACGAGACGCCAATCC
GTTTGGTGGTCATTTTGATATGAGTGAGACGTCAGATCTTCTAAAGATTG
AAGAGCAGAGCTTAGAGACGGTTTTTCTTTTCGTTTCAGACGTCGCTTTA
GACAATTCTCGAGTCTTTGCTGGTTTGCGACATATCTGGAAACCGTTTCT
TGAAGATGGTGTCGTTCCTTCTGTAATAGTTCTCATGGGTAACTTTCTTT
CCCACCGCTTTGGGGAAAAACCAGACGACGTGTCAACTCTATGCGAGAAA
CTCGGAGAGCTGGGTGCCATGGTCAAAGACGAGTTTAAAGAACTAATTGA
CAAAACCACCTTTGTCATAGTCCCGGGACCAAACGACCCAGGACCAGGAA
ATGTATTGCCGCGACCTCCGATGCCGCAGATGATCACTAAACGATTCGTG
GAAGCTGTGGGTTCTGAAAACGTCCACCTTGCTACAAATCCTTGTCAAAT
TCGATTTATTACCCAAGAGATTGTTATTCTAAGAGAAGATCTCATGCAGA
AGATGATTCGTCATTGCGCCGTAAAACCTGATCTGACGGAAGCTGCATTG
ATGCATACTCATTTAGTGAAAACGGTTAGCGACCAGAAATACTTGACTCC
GCTTCCACTCTCTGCAAGGCCAGTCCTCTGGGCTCATGATCATGGCCTCT
GGCTTTTCCCTACACCACACGTTATAGTTCTCGCAGACAAGGTTGACAGC
TACATATGCACGTACGAGAGAAACCTTGGCATGAACCCAGGTTCTTTCAA
AACTGACTTCTCTTTCCTAGTCTACCTTCCAGCTGAGAAACGAGCGCAAC
AAAGCTCCCTGACAGTGAAGACATAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:66140..67365+

>Ggra1199.t1 ID=Ggra1199.t1|Name=Ggra1199.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000168_pilon:66140..67365+ (Gracilaria gracilis GNS1m male)
ATGTTCCGCTCGCGATACGATGTTATGCTCAATAAACCCCTTGAGGATCC
CAAATTGAAGCTACTAATGAGCGAGTTGCAATCGGTCTCCCGGTCTAGGA
TCTGGTACTTAGAGGACCTCAACGTCAAGGCAGACCTGTCCGAGACCTTT
GTGACTTCTGGTATGCATACGGAAGCCAGTTTTGTCATAGCTCAAGGGCA
AGTTACAGAACGCAAAGGGGAAGAGCCAATATTCAAGGGTCAAGAAATAG
AAACCCCTCCTTGTGAGTCCCGCGAGGATACCATCATGGCACTTGGACGA
GACGCCAATCCGTTTGGTGGTCATTTTGATATGAGTGAGACGTCAGATCT
TCTAAAGATTGAAGAGCAGAGCTTAGAGACGGTTTTTCTTTTCGTTTCAG
ACGTCGCTTTAGACAATTCTCGAGTCTTTGCTGGTTTGCGACATATCTGG
AAACCGTTTCTTGAAGATGGTGTCGTTCCTTCTGTAATAGTTCTCATGGG
TAACTTTCTTTCCCACCGCTTTGGGGAAAAACCAGACGACGTGTCAACTC
TATGCGAGAAACTCGGAGAGCTGGGTGCCATGGTCAAAGACGAGTTTAAA
GAACTAATTGACAAAACCACCTTTGTCATAGTCCCGGGACCAAACGACCC
AGGACCAGGAAATGTATTGCCGCGACCTCCGATGCCGCAGATGATCACTA
AACGATTCGTGGAAGCTGTGGGTTCTGAAAACGTCCACCTTGCTACAAAT
CCTTGTCAAATTCGATTTATTACCCAAGAGATTGTTATTCTAAGAGAAGA
TCTCATGCAGAAGATGATTCGTCATTGCGCCGTAAAACCTGATCTGACGG
AAGCTGCATTGATGCATACTCATTTAGTGAAAACGGTTAGCGACCAGAAA
TACTTGACTCCGCTTCCACTCTCTGCAAGGCCAGTCCTCTGGGCTCATGA
TCATGGCCTCTGGCTTTTCCCTACACCACACGTTATAGTTCTCGCAGACA
AGGTTGACAGCTACATATGCACGTACGAGAGAAACCTTGGCATGAACCCA
GGTTCTTTCAAAACTGACTTCTCTTTCCTAGTCTACCTTCCAGCTGAGAA
ACGAGCGCAACAAAGCTCCCTGACAGTGAAGACATAA
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