Ggra1198.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1198.t1
Unique NameGgra1198.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length135
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:52921..53325 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707255.1
Preferred nameCPX1
PFAMsCoprogen_oxidas
Max annot lvl2759|Eukaryota
KEGG rclassRC00884
KEGG koko:K00228
KEGG ReactionR03220
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009719,GO:0009725,GO:0009735,GO:0010033,GO:0042221,GO:0042802,GO:0042803,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046983,GO:0048046,GO:0050896
Evalue7.09e-60
EggNOG OGsCOG0408@1|root,KOG1518@2759|Eukaryota
EC1.3.3.3
Descriptioncoproporphyrinogen oxidase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1198Ggra1198Gracilaria gracilis GNS1m malegenetig00000168_pilon 52921..53325 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1198.t1.start1Ggra1198.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 52921..52923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1198.t1.CDS1Ggra1198.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 52921..53325 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1198.t1.exon1Ggra1198.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 52921..53325 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1198.t1.stop1Ggra1198.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 53323..53325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1198.t1Ggra1198.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 52921..53325 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1198.t1 ID=Ggra1198.t1|Name=Ggra1198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=135bp
MHPKNPMALTMHFNYRDFETDRGLWWFGGGTNLTTAYVFEEEVKYFHSTL
KAWCDRHDREYYINYKKRYDDYFLIKQRGRRRGLGGIFFDDLDDRDAGEI
FKFSEDCASNVCNAYLPIVERRKDAEYTEDQKKW*
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spliced messenger RNA

>Ggra1198.t1 ID=Ggra1198.t1|Name=Ggra1198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000168_pilon:52921..53325+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCCAAAGAATCCAATGGCTTTGACCATGCATTTCAATTATAGAGA
CTTTGAAACCGATCGTGGTCTGTGGTGGTTTGGCGGAGGAACTAATCTTA
CAACTGCTTACGTTTTTGAGGAAGAAGTAAAGTACTTCCATTCCACGTTG
AAGGCTTGGTGTGATAGACATGACAGGGAATACTACATTAATTATAAGAA
GCGGTATGATGACTACTTCTTAATCAAACAAAGAGGCAGGAGAAGAGGTC
TTGGAGGCATCTTCTTCGATGACCTTGACGACAGGGATGCTGGTGAAATA
TTCAAGTTCAGCGAAGATTGTGCTTCAAACGTTTGCAATGCCTATTTGCC
CATTGTTGAACGTCGGAAGGATGCAGAGTATACTGAAGATCAGAAGAAAT
GGTAG
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protein sequence of Ggra1198.t1

>Ggra1198.t1 ID=Ggra1198.t1|Name=Ggra1198.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=135bp
MHPKNPMALTMHFNYRDFETDRGLWWFGGGTNLTTAYVFEEEVKYFHSTL
KAWCDRHDREYYINYKKRYDDYFLIKQRGRRRGLGGIFFDDLDDRDAGEI
FKFSEDCASNVCNAYLPIVERRKDAEYTEDQKKW*
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mRNA from alignment at tig00000168_pilon:52921..53325+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1198.t1 ID=Ggra1198.t1|Name=Ggra1198.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=405bp|location=Sequence derived from alignment at tig00000168_pilon:52921..53325+ (Gracilaria gracilis GNS1m male)
ATGCATCCAAAGAATCCAATGGCTTTGACCATGCATTTCAATTATAGAGA
CTTTGAAACCGATCGTGGTCTGTGGTGGTTTGGCGGAGGAACTAATCTTA
CAACTGCTTACGTTTTTGAGGAAGAAGTAAAGTACTTCCATTCCACGTTG
AAGGCTTGGTGTGATAGACATGACAGGGAATACTACATTAATTATAAGAA
GCGGTATGATGACTACTTCTTAATCAAACAAAGAGGCAGGAGAAGAGGTC
TTGGAGGCATCTTCTTCGATGACCTTGACGACAGGGATGCTGGTGAAATA
TTCAAGTTCAGCGAAGATTGTGCTTCAAACGTTTGCAATGCCTATTTGCC
CATTGTTGAACGTCGGAAGGATGCAGAGTATACTGAAGATCAGAAGAAAT
GGTAG
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Coding sequence (CDS) from alignment at tig00000168_pilon:52921..53325+

>Ggra1198.t1 ID=Ggra1198.t1|Name=Ggra1198.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=405bp|location=Sequence derived from alignment at tig00000168_pilon:52921..53325+ (Gracilaria gracilis GNS1m male)
ATGCATCCAAAGAATCCAATGGCTTTGACCATGCATTTCAATTATAGAGA
CTTTGAAACCGATCGTGGTCTGTGGTGGTTTGGCGGAGGAACTAATCTTA
CAACTGCTTACGTTTTTGAGGAAGAAGTAAAGTACTTCCATTCCACGTTG
AAGGCTTGGTGTGATAGACATGACAGGGAATACTACATTAATTATAAGAA
GCGGTATGATGACTACTTCTTAATCAAACAAAGAGGCAGGAGAAGAGGTC
TTGGAGGCATCTTCTTCGATGACCTTGACGACAGGGATGCTGGTGAAATA
TTCAAGTTCAGCGAAGATTGTGCTTCAAACGTTTGCAATGCCTATTTGCC
CATTGTTGAACGTCGGAAGGATGCAGAGTATACTGAAGATCAGAAGAAAT
GGTAG
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