Ggra1197.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1197.t1
Unique NameGgra1197.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length215
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:49945..50782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1197Ggra1197Gracilaria gracilis GNS1m malegenetig00000168_pilon 49945..50782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1Ggra1197.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 49945..50782 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1.stop1Ggra1197.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 49945..49947 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1.CDS1Ggra1197.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 49945..50484 -
Ggra1197.t1.CDS2Ggra1197.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000168_pilon 50584..50595 -
Ggra1197.t1.CDS3Ggra1197.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000168_pilon 50690..50782 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1.exon1Ggra1197.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 49945..50484 -
Ggra1197.t1.exon2Ggra1197.t1.exon2Gracilaria gracilis GNS1m maleexontig00000168_pilon 50584..50595 -
Ggra1197.t1.exon3Ggra1197.t1.exon3Gracilaria gracilis GNS1m maleexontig00000168_pilon 50690..50782 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1.intron1Ggra1197.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000168_pilon 50485..50583 -
Ggra1197.t1.intron2Ggra1197.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000168_pilon 50596..50689 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1197.t1.start1Ggra1197.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 50780..50782 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1197.t1 ID=Ggra1197.t1|Name=Ggra1197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=215bp
MFQGLWDAMIGFFEDAVVSSRSRPGKLVVTPKGDIGSKKSEAPGLDDPIV
PVAALKAAAARLSSYSEGPMASTEIHTVDSLASAVTEQNTRDAEAIISYL
VSKNEAVPLFTEPHPEHTDPVLSVKFGKRKVNPSDKGVLRTKAALEDMEN
QSSNLEMAIAKEMETATKAAKSGNKAEALTRLEKKKVLEKIGLPKDRKWM
LPASMGRENTRKWK*
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spliced messenger RNA

>Ggra1197.t1 ID=Ggra1197.t1|Name=Ggra1197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=645bp|location=Sequence derived from alignment at tig00000168_pilon:49945..50782- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTCAGGGATTATGGGACGCGATGATCGGGTTTTTCGAGGACGCGGT
AGTTTCGTCACGCAGTCGTCCTGGGAAACTTGTCGTCACTCCAAAGGGAG
ATATTGGTTCGAAGAAATCCGAAGCTCCTGGCCTTGATGACCCAATTGTG
CCGGTGGCGGCACTCAAAGCAGCAGCTGCTCGTCTCTCATCTTATTCTGA
GGGTCCCATGGCTTCAACTGAAATTCACACCGTCGATAGTTTAGCGTCTG
CAGTGACCGAACAAAACACGCGCGATGCAGAGGCTATAATATCATATCTC
GTATCCAAGAATGAAGCCGTGCCTTTGTTTACAGAACCACATCCGGAGCA
TACAGATCCCGTGCTTAGTGTGAAGTTTGGAAAGCGAAAAGTTAACCCGA
GCGACAAGGGGGTTCTTAGAACGAAGGCTGCGCTTGAAGACATGGAAAAT
CAATCGTCCAATTTAGAAATGGCCATTGCCAAGGAAATGGAAACGGCAAC
AAAAGCAGCAAAGTCTGGAAACAAGGCAGAAGCTCTTACGCGGTTGGAAA
AGAAGAAGGTTTTGGAGAAGATCGGTTTGCCAAAGGACCGAAAATGGATG
TTGCCAGCTTCCATGGGTCGTGAGAATACGAGGAAGTGGAAGTAA
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protein sequence of Ggra1197.t1

>Ggra1197.t1 ID=Ggra1197.t1|Name=Ggra1197.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=215bp
MFQGLWDAMIGFFEDAVVSSRSRPGKLVVTPKGDIGSKKSEAPGLDDPIV
PVAALKAAAARLSSYSEGPMASTEIHTVDSLASAVTEQNTRDAEAIISYL
VSKNEAVPLFTEPHPEHTDPVLSVKFGKRKVNPSDKGVLRTKAALEDMEN
QSSNLEMAIAKEMETATKAAKSGNKAEALTRLEKKKVLEKIGLPKDRKWM
LPASMGRENTRKWK*
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mRNA from alignment at tig00000168_pilon:49945..50782-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1197.t1 ID=Ggra1197.t1|Name=Ggra1197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=838bp|location=Sequence derived from alignment at tig00000168_pilon:49945..50782- (Gracilaria gracilis GNS1m male)
ATGTTTCAGGGATTATGGGACGCGATGATCGGGTTTTTCGAGGACGCGGT
AGTTTCGTCACGCAGTCGTCCTGGGAAACTTGTCGTCACTCCAGTACGTA
GTCCAAAGATGATATCGTTCGCCATTATGTTTGACATTAAGGGCACCCCA
ACTAAGAGCTAAACCCATATCGAACGGAACTTTTCAGAAGGGAGATATTG
TAAGTGTAGACACTCTAAAACCCCCATCAAAGGATTCACCAGCGCGATCA
GGTTATACTTTGACTTCCCTGAAGCAAACATTAGGCAGCTACATTTAGGG
TTCGAAGAAATCCGAAGCTCCTGGCCTTGATGACCCAATTGTGCCGGTGG
CGGCACTCAAAGCAGCAGCTGCTCGTCTCTCATCTTATTCTGAGGGTCCC
ATGGCTTCAACTGAAATTCACACCGTCGATAGTTTAGCGTCTGCAGTGAC
CGAACAAAACACGCGCGATGCAGAGGCTATAATATCATATCTCGTATCCA
AGAATGAAGCCGTGCCTTTGTTTACAGAACCACATCCGGAGCATACAGAT
CCCGTGCTTAGTGTGAAGTTTGGAAAGCGAAAAGTTAACCCGAGCGACAA
GGGGGTTCTTAGAACGAAGGCTGCGCTTGAAGACATGGAAAATCAATCGT
CCAATTTAGAAATGGCCATTGCCAAGGAAATGGAAACGGCAACAAAAGCA
GCAAAGTCTGGAAACAAGGCAGAAGCTCTTACGCGGTTGGAAAAGAAGAA
GGTTTTGGAGAAGATCGGTTTGCCAAAGGACCGAAAATGGATGTTGCCAG
CTTCCATGGGTCGTGAGAATACGAGGAAGTGGAAGTAA
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Coding sequence (CDS) from alignment at tig00000168_pilon:49945..50782-

>Ggra1197.t1 ID=Ggra1197.t1|Name=Ggra1197.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=645bp|location=Sequence derived from alignment at tig00000168_pilon:49945..50782- (Gracilaria gracilis GNS1m male)
ATGTTTCAGGGATTATGGGACGCGATGATCGGGTTTTTCGAGGACGCGGT
AGTTTCGTCACGCAGTCGTCCTGGGAAACTTGTCGTCACTCCAAAGGGAG
ATATTGGTTCGAAGAAATCCGAAGCTCCTGGCCTTGATGACCCAATTGTG
CCGGTGGCGGCACTCAAAGCAGCAGCTGCTCGTCTCTCATCTTATTCTGA
GGGTCCCATGGCTTCAACTGAAATTCACACCGTCGATAGTTTAGCGTCTG
CAGTGACCGAACAAAACACGCGCGATGCAGAGGCTATAATATCATATCTC
GTATCCAAGAATGAAGCCGTGCCTTTGTTTACAGAACCACATCCGGAGCA
TACAGATCCCGTGCTTAGTGTGAAGTTTGGAAAGCGAAAAGTTAACCCGA
GCGACAAGGGGGTTCTTAGAACGAAGGCTGCGCTTGAAGACATGGAAAAT
CAATCGTCCAATTTAGAAATGGCCATTGCCAAGGAAATGGAAACGGCAAC
AAAAGCAGCAAAGTCTGGAAACAAGGCAGAAGCTCTTACGCGGTTGGAAA
AGAAGAAGGTTTTGGAGAAGATCGGTTTGCCAAAGGACCGAAAATGGATG
TTGCCAGCTTCCATGGGTCGTGAGAATACGAGGAAGTGGAAGTAA
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