Ggra1196.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1196.t1
Unique NameGgra1196.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:36733..37905 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702263.1
PFAMsCation_ATPase_N,E1-E2_ATPase,Hydrolase
Max annot lvl2759|Eukaryota
KEGG koko:K14950
KEGG TC3.A.3.10
GOsGO:0000003,GO:0001709,GO:0003674,GO:0003824,GO:0005215,GO:0005388,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006950,GO:0007154,GO:0007275,GO:0008150,GO:0008324,GO:0009267,GO:0009555,GO:0009605,GO:0009846,GO:0009856,GO:0009888,GO:0009987,GO:0009991,GO:0010073,GO:0010152,GO:0012505,GO:0015075,GO:0015085,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0016020,GO:0016021,GO:0016036,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019725,GO:0019829,GO:0021700,GO:0022414,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030154,GO:0031224,GO:0031226,GO:0031667,GO:0031668,GO:0031669,GO:0032501,GO:0032502,GO:0033554,GO:0034220,GO:0042592,GO:0042594,GO:0042623,GO:0042625,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0044706,GO:0045165,GO:0046873,GO:0048229,GO:0048507,GO:0048856,GO:0048863,GO:0048865,GO:0048867,GO:0048869,GO:0048878,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051704,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071496,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099131,GO:0099132
Evalue8.53e-96
EggNOG OGsCOG0474@1|root,KOG0209@2759|Eukaryota
Descriptioncalcium-transporting ATPase activity
COG categoryP
BRITEko00000,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1196Ggra1196Gracilaria gracilis GNS1m malegenetig00000168_pilon 36733..37905 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1196.t1.stop1Ggra1196.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 36733..36735 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1196.t1.CDS1Ggra1196.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 36733..37905 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1196.t1.exon1Ggra1196.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 36733..37905 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1196.t1.start1Ggra1196.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 37903..37905 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1196.t1Ggra1196.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 36733..37905 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1196.t1 ID=Ggra1196.t1|Name=Ggra1196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=391bp
MTFGMMLVFEATVLAPRLRSLRELGGTHNPPLLTLVYRAKKWQTISSLEL
FPGDIISIRRGKDPSQAVPCDLMLLSGSAVVNEAMLTEESVPLMKEPKST
ISSSDMSEQLAINTFHNNHILFGGIRILTYTPATADDMTPPYKSPDNGCI
CFVLHTGFRSLQSKLMRTISYSTESVTENSWEAAMFILLVLVFAIAASAY
VLHHRYTEDHDGRYKLLLICVLIITSVVPPELPMQLAIAVNNLLIALANS
FVFCTEPYRIPFAGKIDVCCFDQTGTLTTDSINAAGVFLPSEDSSEEKVP
ERVSNFYDFLPVETSPIDAALVIGACHSLGHIDNEFVEDTLELAALESIN
WIHGHSATGVPKRGGAGLACAKIFAKIQVRLRNSENDCDC*
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spliced messenger RNA

>Ggra1196.t1 ID=Ggra1196.t1|Name=Ggra1196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000168_pilon:36733..37905- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTTTGGTATGATGCTTGTGTTCGAAGCAACGGTTTTGGCACCCAG
ATTGCGAAGCTTGCGTGAATTGGGTGGTACGCACAACCCGCCTTTGCTAA
CCCTTGTTTACAGAGCAAAGAAATGGCAGACTATATCATCACTTGAACTT
TTCCCTGGAGATATCATTTCCATACGCCGTGGAAAGGATCCATCGCAAGC
CGTTCCTTGCGATCTGATGCTGCTTTCGGGAAGTGCTGTGGTTAATGAAG
CTATGCTCACAGAAGAATCTGTCCCGCTGATGAAAGAGCCGAAATCGACC
ATATCATCATCTGATATGAGTGAACAGCTTGCTATTAACACTTTCCATAA
TAATCATATTCTATTCGGTGGAATCCGCATTCTTACATACACTCCTGCTA
CTGCGGATGACATGACACCACCATACAAGTCTCCAGATAATGGATGTATC
TGCTTTGTTCTGCACACGGGATTCAGATCGTTGCAGAGTAAGCTGATGCG
CACAATTTCCTACTCAACAGAATCTGTTACCGAAAATTCATGGGAAGCTG
CAATGTTCATCTTGTTAGTGCTCGTATTTGCCATTGCTGCTTCCGCTTAT
GTGCTCCATCATCGATACACCGAAGATCACGATGGACGATACAAACTGCT
GCTGATATGCGTTCTTATCATTACTTCAGTGGTACCGCCGGAGCTGCCAA
TGCAACTTGCTATAGCTGTAAATAACTTACTCATTGCTCTTGCGAATAGC
TTCGTTTTCTGTACAGAACCATACAGAATTCCGTTCGCCGGGAAGATTGA
CGTCTGCTGCTTTGACCAGACCGGAACTTTGACGACCGACTCTATCAACG
CGGCTGGGGTATTCTTACCGTCTGAGGATAGTTCTGAAGAGAAAGTGCCA
GAAAGAGTATCAAACTTCTATGATTTCTTGCCGGTTGAGACTTCACCCAT
TGATGCAGCCCTTGTTATCGGCGCTTGTCATTCGCTGGGGCACATCGACA
ACGAATTCGTCGAAGATACCCTCGAATTGGCGGCTCTGGAATCAATAAAC
TGGATACACGGACATAGCGCGACTGGCGTACCGAAACGAGGCGGAGCGGG
CCTTGCATGTGCTAAGATATTTGCAAAGATACAGGTTCGCCTCCGCAATT
CAGAGAATGACTGTGATTGCTGA
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protein sequence of Ggra1196.t1

>Ggra1196.t1 ID=Ggra1196.t1|Name=Ggra1196.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=391bp
MTFGMMLVFEATVLAPRLRSLRELGGTHNPPLLTLVYRAKKWQTISSLEL
FPGDIISIRRGKDPSQAVPCDLMLLSGSAVVNEAMLTEESVPLMKEPKST
ISSSDMSEQLAINTFHNNHILFGGIRILTYTPATADDMTPPYKSPDNGCI
CFVLHTGFRSLQSKLMRTISYSTESVTENSWEAAMFILLVLVFAIAASAY
VLHHRYTEDHDGRYKLLLICVLIITSVVPPELPMQLAIAVNNLLIALANS
FVFCTEPYRIPFAGKIDVCCFDQTGTLTTDSINAAGVFLPSEDSSEEKVP
ERVSNFYDFLPVETSPIDAALVIGACHSLGHIDNEFVEDTLELAALESIN
WIHGHSATGVPKRGGAGLACAKIFAKIQVRLRNSENDCDC*
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mRNA from alignment at tig00000168_pilon:36733..37905-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1196.t1 ID=Ggra1196.t1|Name=Ggra1196.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000168_pilon:36733..37905- (Gracilaria gracilis GNS1m male)
ATGACTTTTGGTATGATGCTTGTGTTCGAAGCAACGGTTTTGGCACCCAG
ATTGCGAAGCTTGCGTGAATTGGGTGGTACGCACAACCCGCCTTTGCTAA
CCCTTGTTTACAGAGCAAAGAAATGGCAGACTATATCATCACTTGAACTT
TTCCCTGGAGATATCATTTCCATACGCCGTGGAAAGGATCCATCGCAAGC
CGTTCCTTGCGATCTGATGCTGCTTTCGGGAAGTGCTGTGGTTAATGAAG
CTATGCTCACAGAAGAATCTGTCCCGCTGATGAAAGAGCCGAAATCGACC
ATATCATCATCTGATATGAGTGAACAGCTTGCTATTAACACTTTCCATAA
TAATCATATTCTATTCGGTGGAATCCGCATTCTTACATACACTCCTGCTA
CTGCGGATGACATGACACCACCATACAAGTCTCCAGATAATGGATGTATC
TGCTTTGTTCTGCACACGGGATTCAGATCGTTGCAGAGTAAGCTGATGCG
CACAATTTCCTACTCAACAGAATCTGTTACCGAAAATTCATGGGAAGCTG
CAATGTTCATCTTGTTAGTGCTCGTATTTGCCATTGCTGCTTCCGCTTAT
GTGCTCCATCATCGATACACCGAAGATCACGATGGACGATACAAACTGCT
GCTGATATGCGTTCTTATCATTACTTCAGTGGTACCGCCGGAGCTGCCAA
TGCAACTTGCTATAGCTGTAAATAACTTACTCATTGCTCTTGCGAATAGC
TTCGTTTTCTGTACAGAACCATACAGAATTCCGTTCGCCGGGAAGATTGA
CGTCTGCTGCTTTGACCAGACCGGAACTTTGACGACCGACTCTATCAACG
CGGCTGGGGTATTCTTACCGTCTGAGGATAGTTCTGAAGAGAAAGTGCCA
GAAAGAGTATCAAACTTCTATGATTTCTTGCCGGTTGAGACTTCACCCAT
TGATGCAGCCCTTGTTATCGGCGCTTGTCATTCGCTGGGGCACATCGACA
ACGAATTCGTCGAAGATACCCTCGAATTGGCGGCTCTGGAATCAATAAAC
TGGATACACGGACATAGCGCGACTGGCGTACCGAAACGAGGCGGAGCGGG
CCTTGCATGTGCTAAGATATTTGCAAAGATACAGGTTCGCCTCCGCAATT
CAGAGAATGACTGTGATTGCTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:36733..37905-

>Ggra1196.t1 ID=Ggra1196.t1|Name=Ggra1196.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000168_pilon:36733..37905- (Gracilaria gracilis GNS1m male)
ATGACTTTTGGTATGATGCTTGTGTTCGAAGCAACGGTTTTGGCACCCAG
ATTGCGAAGCTTGCGTGAATTGGGTGGTACGCACAACCCGCCTTTGCTAA
CCCTTGTTTACAGAGCAAAGAAATGGCAGACTATATCATCACTTGAACTT
TTCCCTGGAGATATCATTTCCATACGCCGTGGAAAGGATCCATCGCAAGC
CGTTCCTTGCGATCTGATGCTGCTTTCGGGAAGTGCTGTGGTTAATGAAG
CTATGCTCACAGAAGAATCTGTCCCGCTGATGAAAGAGCCGAAATCGACC
ATATCATCATCTGATATGAGTGAACAGCTTGCTATTAACACTTTCCATAA
TAATCATATTCTATTCGGTGGAATCCGCATTCTTACATACACTCCTGCTA
CTGCGGATGACATGACACCACCATACAAGTCTCCAGATAATGGATGTATC
TGCTTTGTTCTGCACACGGGATTCAGATCGTTGCAGAGTAAGCTGATGCG
CACAATTTCCTACTCAACAGAATCTGTTACCGAAAATTCATGGGAAGCTG
CAATGTTCATCTTGTTAGTGCTCGTATTTGCCATTGCTGCTTCCGCTTAT
GTGCTCCATCATCGATACACCGAAGATCACGATGGACGATACAAACTGCT
GCTGATATGCGTTCTTATCATTACTTCAGTGGTACCGCCGGAGCTGCCAA
TGCAACTTGCTATAGCTGTAAATAACTTACTCATTGCTCTTGCGAATAGC
TTCGTTTTCTGTACAGAACCATACAGAATTCCGTTCGCCGGGAAGATTGA
CGTCTGCTGCTTTGACCAGACCGGAACTTTGACGACCGACTCTATCAACG
CGGCTGGGGTATTCTTACCGTCTGAGGATAGTTCTGAAGAGAAAGTGCCA
GAAAGAGTATCAAACTTCTATGATTTCTTGCCGGTTGAGACTTCACCCAT
TGATGCAGCCCTTGTTATCGGCGCTTGTCATTCGCTGGGGCACATCGACA
ACGAATTCGTCGAAGATACCCTCGAATTGGCGGCTCTGGAATCAATAAAC
TGGATACACGGACATAGCGCGACTGGCGTACCGAAACGAGGCGGAGCGGG
CCTTGCATGTGCTAAGATATTTGCAAAGATACAGGTTCGCCTCCGCAATT
CAGAGAATGACTGTGATTGCTGA
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