Ggra1193.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1193.t1
Unique NameGgra1193.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000168_piloncontigtig00000168_pilon:14970..15725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_02512T0
PFAMsPatched
Max annot lvl2759|Eukaryota
Evalue4.8e-16
EggNOG OGsKOG3664@1|root,KOG3664@2759|Eukaryota
Descriptionpatched ligand maturation
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1193Ggra1193Gracilaria gracilis GNS1m malegenetig00000168_pilon 14970..15725 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1193.t1.stop1Ggra1193.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000168_pilon 14970..14972 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1193.t1.CDS1Ggra1193.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000168_pilon 14970..15725 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1193.t1.exon1Ggra1193.t1.exon1Gracilaria gracilis GNS1m maleexontig00000168_pilon 14970..15725 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1193.t1.start1Ggra1193.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000168_pilon 15723..15725 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1193.t1Ggra1193.t1Gracilaria gracilis GNS1m malepolypeptidetig00000168_pilon 14970..15725 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1193.t1 ID=Ggra1193.t1|Name=Ggra1193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MNDTEIEDCEEKQFNCASPLSLLNSPFLSGKWQGDCHGGRFNTEQQTSEE
PFSLCLNPLLQTDSYGKIVVNPKYNELVGDNILQGTNSTWLMLNILRIGG
PFRNFSSIENRREEQENHYIQWGLDRMDQVEALSMPPKTEVTLMGSKLRN
AAFSSIELRDLSFCVVAILLVFLIIWFHTGSQFLAAAAMGQVFFSFPLAC
IIYRLVFQQKYFAALQIFSLFLLLCIGADDEFLFTDAWKQSRWTSELRQE
L*
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spliced messenger RNA

>Ggra1193.t1 ID=Ggra1193.t1|Name=Ggra1193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000168_pilon:14970..15725- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATGATACAGAGATAGAAGACTGCGAAGAAAAGCAGTTCAATTGCGC
TTCGCCGCTGTCGCTGCTGAATAGTCCGTTTCTGAGTGGCAAATGGCAGG
GAGACTGCCATGGTGGCAGATTTAACACAGAACAACAGACGTCAGAAGAA
CCTTTCTCCTTGTGTTTGAACCCGTTGCTGCAGACTGACAGCTATGGTAA
GATCGTGGTGAATCCGAAGTACAATGAGCTGGTAGGCGACAACATTTTGC
AGGGAACAAACTCTACCTGGCTCATGCTCAATATTCTGCGCATTGGGGGC
CCTTTCCGCAACTTTTCGTCCATTGAGAACAGACGAGAAGAACAAGAAAA
CCATTACATCCAGTGGGGACTGGACAGAATGGATCAAGTCGAAGCGCTGT
CAATGCCGCCGAAAACAGAAGTGACTCTAATGGGCAGCAAGCTGAGAAAC
GCCGCATTCTCAAGCATTGAACTGAGAGACCTGTCATTCTGCGTGGTGGC
CATCTTGCTTGTGTTCCTCATCATCTGGTTTCATACTGGTAGTCAGTTCT
TGGCTGCGGCGGCAATGGGTCAAGTGTTTTTCTCGTTCCCGCTTGCATGC
ATCATCTACCGATTAGTGTTTCAGCAAAAGTACTTTGCAGCGCTCCAGAT
CTTCTCGCTTTTTCTGCTTCTCTGCATCGGTGCTGATGACGAGTTTTTGT
TCACAGACGCGTGGAAACAGTCTCGGTGGACCTCAGAACTAAGGCAGGAA
TTGTGA
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protein sequence of Ggra1193.t1

>Ggra1193.t1 ID=Ggra1193.t1|Name=Ggra1193.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MNDTEIEDCEEKQFNCASPLSLLNSPFLSGKWQGDCHGGRFNTEQQTSEE
PFSLCLNPLLQTDSYGKIVVNPKYNELVGDNILQGTNSTWLMLNILRIGG
PFRNFSSIENRREEQENHYIQWGLDRMDQVEALSMPPKTEVTLMGSKLRN
AAFSSIELRDLSFCVVAILLVFLIIWFHTGSQFLAAAAMGQVFFSFPLAC
IIYRLVFQQKYFAALQIFSLFLLLCIGADDEFLFTDAWKQSRWTSELRQE
L*
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mRNA from alignment at tig00000168_pilon:14970..15725-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1193.t1 ID=Ggra1193.t1|Name=Ggra1193.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000168_pilon:14970..15725- (Gracilaria gracilis GNS1m male)
ATGAATGATACAGAGATAGAAGACTGCGAAGAAAAGCAGTTCAATTGCGC
TTCGCCGCTGTCGCTGCTGAATAGTCCGTTTCTGAGTGGCAAATGGCAGG
GAGACTGCCATGGTGGCAGATTTAACACAGAACAACAGACGTCAGAAGAA
CCTTTCTCCTTGTGTTTGAACCCGTTGCTGCAGACTGACAGCTATGGTAA
GATCGTGGTGAATCCGAAGTACAATGAGCTGGTAGGCGACAACATTTTGC
AGGGAACAAACTCTACCTGGCTCATGCTCAATATTCTGCGCATTGGGGGC
CCTTTCCGCAACTTTTCGTCCATTGAGAACAGACGAGAAGAACAAGAAAA
CCATTACATCCAGTGGGGACTGGACAGAATGGATCAAGTCGAAGCGCTGT
CAATGCCGCCGAAAACAGAAGTGACTCTAATGGGCAGCAAGCTGAGAAAC
GCCGCATTCTCAAGCATTGAACTGAGAGACCTGTCATTCTGCGTGGTGGC
CATCTTGCTTGTGTTCCTCATCATCTGGTTTCATACTGGTAGTCAGTTCT
TGGCTGCGGCGGCAATGGGTCAAGTGTTTTTCTCGTTCCCGCTTGCATGC
ATCATCTACCGATTAGTGTTTCAGCAAAAGTACTTTGCAGCGCTCCAGAT
CTTCTCGCTTTTTCTGCTTCTCTGCATCGGTGCTGATGACGAGTTTTTGT
TCACAGACGCGTGGAAACAGTCTCGGTGGACCTCAGAACTAAGGCAGGAA
TTGTGA
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Coding sequence (CDS) from alignment at tig00000168_pilon:14970..15725-

>Ggra1193.t1 ID=Ggra1193.t1|Name=Ggra1193.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000168_pilon:14970..15725- (Gracilaria gracilis GNS1m male)
ATGAATGATACAGAGATAGAAGACTGCGAAGAAAAGCAGTTCAATTGCGC
TTCGCCGCTGTCGCTGCTGAATAGTCCGTTTCTGAGTGGCAAATGGCAGG
GAGACTGCCATGGTGGCAGATTTAACACAGAACAACAGACGTCAGAAGAA
CCTTTCTCCTTGTGTTTGAACCCGTTGCTGCAGACTGACAGCTATGGTAA
GATCGTGGTGAATCCGAAGTACAATGAGCTGGTAGGCGACAACATTTTGC
AGGGAACAAACTCTACCTGGCTCATGCTCAATATTCTGCGCATTGGGGGC
CCTTTCCGCAACTTTTCGTCCATTGAGAACAGACGAGAAGAACAAGAAAA
CCATTACATCCAGTGGGGACTGGACAGAATGGATCAAGTCGAAGCGCTGT
CAATGCCGCCGAAAACAGAAGTGACTCTAATGGGCAGCAAGCTGAGAAAC
GCCGCATTCTCAAGCATTGAACTGAGAGACCTGTCATTCTGCGTGGTGGC
CATCTTGCTTGTGTTCCTCATCATCTGGTTTCATACTGGTAGTCAGTTCT
TGGCTGCGGCGGCAATGGGTCAAGTGTTTTTCTCGTTCCCGCTTGCATGC
ATCATCTACCGATTAGTGTTTCAGCAAAAGTACTTTGCAGCGCTCCAGAT
CTTCTCGCTTTTTCTGCTTCTCTGCATCGGTGCTGATGACGAGTTTTTGT
TCACAGACGCGTGGAAACAGTCTCGGTGGACCTCAGAACTAAGGCAGGAA
TTGTGA
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