Ggra1188.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1188.t1
Unique NameGgra1188.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length561
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:116720..118402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8128.ENSONIP00000007434
Preferred nameSLC24A4
PFAMsNa_Ca_ex
Max annot lvl33208|Metazoa
KEGG koko:K13751,ko:K13752
KEGG TC2.A.19.4,2.A.19.4.5
KEGG Pathwayko04740,map04740
GOsGO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005432,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006813,GO:0006814,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0007275,GO:0007600,GO:0007606,GO:0007608,GO:0008150,GO:0008273,GO:0008324,GO:0009653,GO:0009887,GO:0009987,GO:0015075,GO:0015077,GO:0015079,GO:0015081,GO:0015085,GO:0015267,GO:0015291,GO:0015297,GO:0015298,GO:0015318,GO:0015368,GO:0015491,GO:0015672,GO:0016020,GO:0016021,GO:0019725,GO:0022803,GO:0022804,GO:0022821,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030955,GO:0031224,GO:0031226,GO:0031402,GO:0031420,GO:0032501,GO:0032502,GO:0034220,GO:0035725,GO:0042475,GO:0042476,GO:0042592,GO:0043167,GO:0043169,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0046872,GO:0046873,GO:0048513,GO:0048646,GO:0048731,GO:0048856,GO:0048878,GO:0050801,GO:0050877,GO:0051179,GO:0051234,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071804,GO:0071805,GO:0071944,GO:0072503,GO:0072507,GO:0072511,GO:0097186,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0099516
Evalue8.66e-75
EggNOG OGsCOG0530@1|root,KOG1307@2759|Eukaryota,38CGX@33154|Opisthokonta,3B994@33208|Metazoa,3CRWG@33213|Bilateria,480KJ@7711|Chordata,495Q1@7742|Vertebrata,49YP2@7898|Actinopterygii
DescriptionSodium potassium calcium exchanger
COG categoryPT
BRITEko00000,ko00001,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1188Ggra1188Gracilaria gracilis GNS1m malegenetig00000237_pilon 116720..118402 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1188.t1.stop1Ggra1188.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 116720..116722 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1188.t1.CDS1Ggra1188.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 116720..118402 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1188.t1.exon1Ggra1188.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 116720..118402 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1188.t1.start1Ggra1188.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 118400..118402 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1188.t1Ggra1188.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 116720..118402 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1188.t1 ID=Ggra1188.t1|Name=Ggra1188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp
MSAITLRHRRRYRRHARSRKDATPLASLLFLAVIAISAVYYRKQSVSSIS
TSTRSLRTPVTLLSEAVTSTQPSLEHIVTARSSADYGGLCSSGNIFSSKA
SLAFLIPGIVLLFVGLAIVTDDYFIAALERICERLDLSEDVAGATFMAAG
SSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKL
DWRPLLRDSSFYIASIVLLLLFVLPVSKGQIVWWEGLILVLFYVVYVLFM
AFANKPYMKWAARLGQKTARNSHEPDLEAGTPGKAYPTENGDVVEVEQGT
WSAETSPSTSPGSSPQPPSSSMSKYSEVSLKSKFRSLQYAVIAANRLRAS
AEHVEEKKTFLGVELPQSTLGWIFFPMTFFWRFLFRYTIIDCADEKRAHL
WWLTFFLSIVWISGISYVMVEAARIVGCLIGIPAPVMGLTLLAAGTSVPD
ALASISVARGGAGDMAVSNAIGSNVFDILLGLGFPWFLGHLIKREPIAIT
VSPVTTVVIPIIILFAIMVVLIGVLVALKWKMRPLLGYILFALYGAFVTY
ALLDVYVIGK*
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spliced messenger RNA

>Ggra1188.t1 ID=Ggra1188.t1|Name=Ggra1188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000237_pilon:116720..118402- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCTATCACTCTTCGTCACCGCCGCCGCTATCGGCGCCACGCTAG
GTCTAGGAAGGATGCCACTCCACTCGCTTCACTGCTTTTCCTGGCCGTCA
TAGCAATTTCTGCAGTATACTACAGAAAACAGTCCGTTTCTTCAATATCC
ACATCCACCCGCTCGCTGCGAACGCCTGTCACACTACTTTCGGAAGCTGT
GACAAGCACCCAACCCTCGCTAGAACACATTGTAACTGCCAGAAGTTCTG
CCGACTATGGAGGCTTGTGCAGCAGCGGAAACATTTTTTCAAGCAAGGCA
TCTCTGGCTTTTCTCATTCCTGGAATCGTTCTCTTGTTTGTTGGTCTTGC
TATTGTCACTGATGACTACTTCATTGCAGCCTTAGAGCGTATATGCGAGC
GTCTTGATCTTAGTGAAGATGTTGCTGGCGCAACTTTTATGGCTGCTGGC
TCTAGTACCCCAGAATTCTTCGCCTCTCTGCTTGGCGTGTTCGTCACGGA
AGACGAGGTCGGTATTGGAACAATTGTCGGAAGCGCTGTGTTTAACATTC
TTGTCATCATTGGACTCAGCGCTGCGCTTGCGGGTGCCGTTATCAAGTTG
GACTGGCGTCCACTTCTGCGCGATTCATCGTTTTATATTGCGAGTATCGT
CCTTCTGCTCTTGTTTGTTCTCCCAGTCTCTAAAGGTCAAATAGTTTGGT
GGGAAGGCTTGATTCTTGTTTTGTTCTACGTCGTATATGTTCTTTTCATG
GCGTTCGCAAACAAGCCGTACATGAAATGGGCAGCCCGCCTAGGCCAGAA
GACTGCGAGGAATTCGCATGAGCCTGATCTCGAAGCTGGAACCCCTGGCA
AAGCCTATCCCACGGAGAATGGAGATGTCGTGGAAGTGGAACAGGGGACA
TGGAGTGCGGAAACGTCGCCCAGCACATCGCCCGGCAGTTCACCTCAGCC
CCCCTCCTCCTCGATGAGCAAGTATTCAGAAGTTTCTCTCAAATCAAAGT
TCCGCTCGTTGCAATACGCCGTAATAGCTGCCAACAGATTACGCGCTTCA
GCGGAGCATGTAGAGGAAAAGAAAACATTTCTGGGCGTAGAGCTCCCACA
AAGTACTCTAGGTTGGATATTCTTCCCTATGACGTTCTTTTGGCGATTTC
TATTCCGCTATACGATTATTGACTGCGCAGACGAGAAACGCGCTCATCTA
TGGTGGTTGACATTCTTCCTATCCATTGTTTGGATTAGTGGAATTAGCTA
TGTCATGGTTGAAGCGGCGAGAATTGTTGGTTGTTTGATTGGAATTCCAG
CCCCAGTCATGGGTCTGACTCTTCTTGCGGCAGGAACAAGTGTACCGGAT
GCCCTAGCATCGATATCTGTAGCCAGAGGTGGAGCCGGGGATATGGCGGT
GAGCAACGCAATCGGTAGCAATGTGTTTGACATCCTTCTTGGTCTTGGAT
TTCCTTGGTTTTTGGGACATTTGATTAAGAGGGAACCTATAGCAATCACA
GTGTCACCAGTTACAACTGTGGTCATTCCTATCATCATTCTGTTTGCCAT
CATGGTAGTGCTGATCGGCGTGCTTGTAGCCCTGAAGTGGAAGATGAGAC
CGTTGCTTGGATATATTTTGTTTGCGCTATATGGAGCGTTTGTTACGTAC
GCATTACTCGATGTTTACGTCATTGGAAAGTAA
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protein sequence of Ggra1188.t1

>Ggra1188.t1 ID=Ggra1188.t1|Name=Ggra1188.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=561bp
MSAITLRHRRRYRRHARSRKDATPLASLLFLAVIAISAVYYRKQSVSSIS
TSTRSLRTPVTLLSEAVTSTQPSLEHIVTARSSADYGGLCSSGNIFSSKA
SLAFLIPGIVLLFVGLAIVTDDYFIAALERICERLDLSEDVAGATFMAAG
SSTPEFFASLLGVFVTEDEVGIGTIVGSAVFNILVIIGLSAALAGAVIKL
DWRPLLRDSSFYIASIVLLLLFVLPVSKGQIVWWEGLILVLFYVVYVLFM
AFANKPYMKWAARLGQKTARNSHEPDLEAGTPGKAYPTENGDVVEVEQGT
WSAETSPSTSPGSSPQPPSSSMSKYSEVSLKSKFRSLQYAVIAANRLRAS
AEHVEEKKTFLGVELPQSTLGWIFFPMTFFWRFLFRYTIIDCADEKRAHL
WWLTFFLSIVWISGISYVMVEAARIVGCLIGIPAPVMGLTLLAAGTSVPD
ALASISVARGGAGDMAVSNAIGSNVFDILLGLGFPWFLGHLIKREPIAIT
VSPVTTVVIPIIILFAIMVVLIGVLVALKWKMRPLLGYILFALYGAFVTY
ALLDVYVIGK*
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mRNA from alignment at tig00000237_pilon:116720..118402-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1188.t1 ID=Ggra1188.t1|Name=Ggra1188.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1683bp|location=Sequence derived from alignment at tig00000237_pilon:116720..118402- (Gracilaria gracilis GNS1m male)
ATGTCGGCTATCACTCTTCGTCACCGCCGCCGCTATCGGCGCCACGCTAG
GTCTAGGAAGGATGCCACTCCACTCGCTTCACTGCTTTTCCTGGCCGTCA
TAGCAATTTCTGCAGTATACTACAGAAAACAGTCCGTTTCTTCAATATCC
ACATCCACCCGCTCGCTGCGAACGCCTGTCACACTACTTTCGGAAGCTGT
GACAAGCACCCAACCCTCGCTAGAACACATTGTAACTGCCAGAAGTTCTG
CCGACTATGGAGGCTTGTGCAGCAGCGGAAACATTTTTTCAAGCAAGGCA
TCTCTGGCTTTTCTCATTCCTGGAATCGTTCTCTTGTTTGTTGGTCTTGC
TATTGTCACTGATGACTACTTCATTGCAGCCTTAGAGCGTATATGCGAGC
GTCTTGATCTTAGTGAAGATGTTGCTGGCGCAACTTTTATGGCTGCTGGC
TCTAGTACCCCAGAATTCTTCGCCTCTCTGCTTGGCGTGTTCGTCACGGA
AGACGAGGTCGGTATTGGAACAATTGTCGGAAGCGCTGTGTTTAACATTC
TTGTCATCATTGGACTCAGCGCTGCGCTTGCGGGTGCCGTTATCAAGTTG
GACTGGCGTCCACTTCTGCGCGATTCATCGTTTTATATTGCGAGTATCGT
CCTTCTGCTCTTGTTTGTTCTCCCAGTCTCTAAAGGTCAAATAGTTTGGT
GGGAAGGCTTGATTCTTGTTTTGTTCTACGTCGTATATGTTCTTTTCATG
GCGTTCGCAAACAAGCCGTACATGAAATGGGCAGCCCGCCTAGGCCAGAA
GACTGCGAGGAATTCGCATGAGCCTGATCTCGAAGCTGGAACCCCTGGCA
AAGCCTATCCCACGGAGAATGGAGATGTCGTGGAAGTGGAACAGGGGACA
TGGAGTGCGGAAACGTCGCCCAGCACATCGCCCGGCAGTTCACCTCAGCC
CCCCTCCTCCTCGATGAGCAAGTATTCAGAAGTTTCTCTCAAATCAAAGT
TCCGCTCGTTGCAATACGCCGTAATAGCTGCCAACAGATTACGCGCTTCA
GCGGAGCATGTAGAGGAAAAGAAAACATTTCTGGGCGTAGAGCTCCCACA
AAGTACTCTAGGTTGGATATTCTTCCCTATGACGTTCTTTTGGCGATTTC
TATTCCGCTATACGATTATTGACTGCGCAGACGAGAAACGCGCTCATCTA
TGGTGGTTGACATTCTTCCTATCCATTGTTTGGATTAGTGGAATTAGCTA
TGTCATGGTTGAAGCGGCGAGAATTGTTGGTTGTTTGATTGGAATTCCAG
CCCCAGTCATGGGTCTGACTCTTCTTGCGGCAGGAACAAGTGTACCGGAT
GCCCTAGCATCGATATCTGTAGCCAGAGGTGGAGCCGGGGATATGGCGGT
GAGCAACGCAATCGGTAGCAATGTGTTTGACATCCTTCTTGGTCTTGGAT
TTCCTTGGTTTTTGGGACATTTGATTAAGAGGGAACCTATAGCAATCACA
GTGTCACCAGTTACAACTGTGGTCATTCCTATCATCATTCTGTTTGCCAT
CATGGTAGTGCTGATCGGCGTGCTTGTAGCCCTGAAGTGGAAGATGAGAC
CGTTGCTTGGATATATTTTGTTTGCGCTATATGGAGCGTTTGTTACGTAC
GCATTACTCGATGTTTACGTCATTGGAAAGTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:116720..118402-

>Ggra1188.t1 ID=Ggra1188.t1|Name=Ggra1188.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1683bp|location=Sequence derived from alignment at tig00000237_pilon:116720..118402- (Gracilaria gracilis GNS1m male)
ATGTCGGCTATCACTCTTCGTCACCGCCGCCGCTATCGGCGCCACGCTAG
GTCTAGGAAGGATGCCACTCCACTCGCTTCACTGCTTTTCCTGGCCGTCA
TAGCAATTTCTGCAGTATACTACAGAAAACAGTCCGTTTCTTCAATATCC
ACATCCACCCGCTCGCTGCGAACGCCTGTCACACTACTTTCGGAAGCTGT
GACAAGCACCCAACCCTCGCTAGAACACATTGTAACTGCCAGAAGTTCTG
CCGACTATGGAGGCTTGTGCAGCAGCGGAAACATTTTTTCAAGCAAGGCA
TCTCTGGCTTTTCTCATTCCTGGAATCGTTCTCTTGTTTGTTGGTCTTGC
TATTGTCACTGATGACTACTTCATTGCAGCCTTAGAGCGTATATGCGAGC
GTCTTGATCTTAGTGAAGATGTTGCTGGCGCAACTTTTATGGCTGCTGGC
TCTAGTACCCCAGAATTCTTCGCCTCTCTGCTTGGCGTGTTCGTCACGGA
AGACGAGGTCGGTATTGGAACAATTGTCGGAAGCGCTGTGTTTAACATTC
TTGTCATCATTGGACTCAGCGCTGCGCTTGCGGGTGCCGTTATCAAGTTG
GACTGGCGTCCACTTCTGCGCGATTCATCGTTTTATATTGCGAGTATCGT
CCTTCTGCTCTTGTTTGTTCTCCCAGTCTCTAAAGGTCAAATAGTTTGGT
GGGAAGGCTTGATTCTTGTTTTGTTCTACGTCGTATATGTTCTTTTCATG
GCGTTCGCAAACAAGCCGTACATGAAATGGGCAGCCCGCCTAGGCCAGAA
GACTGCGAGGAATTCGCATGAGCCTGATCTCGAAGCTGGAACCCCTGGCA
AAGCCTATCCCACGGAGAATGGAGATGTCGTGGAAGTGGAACAGGGGACA
TGGAGTGCGGAAACGTCGCCCAGCACATCGCCCGGCAGTTCACCTCAGCC
CCCCTCCTCCTCGATGAGCAAGTATTCAGAAGTTTCTCTCAAATCAAAGT
TCCGCTCGTTGCAATACGCCGTAATAGCTGCCAACAGATTACGCGCTTCA
GCGGAGCATGTAGAGGAAAAGAAAACATTTCTGGGCGTAGAGCTCCCACA
AAGTACTCTAGGTTGGATATTCTTCCCTATGACGTTCTTTTGGCGATTTC
TATTCCGCTATACGATTATTGACTGCGCAGACGAGAAACGCGCTCATCTA
TGGTGGTTGACATTCTTCCTATCCATTGTTTGGATTAGTGGAATTAGCTA
TGTCATGGTTGAAGCGGCGAGAATTGTTGGTTGTTTGATTGGAATTCCAG
CCCCAGTCATGGGTCTGACTCTTCTTGCGGCAGGAACAAGTGTACCGGAT
GCCCTAGCATCGATATCTGTAGCCAGAGGTGGAGCCGGGGATATGGCGGT
GAGCAACGCAATCGGTAGCAATGTGTTTGACATCCTTCTTGGTCTTGGAT
TTCCTTGGTTTTTGGGACATTTGATTAAGAGGGAACCTATAGCAATCACA
GTGTCACCAGTTACAACTGTGGTCATTCCTATCATCATTCTGTTTGCCAT
CATGGTAGTGCTGATCGGCGTGCTTGTAGCCCTGAAGTGGAAGATGAGAC
CGTTGCTTGGATATATTTTGTTTGCGCTATATGGAGCGTTTGTTACGTAC
GCATTACTCGATGTTTACGTCATTGGAAAGTAA
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