Ggra1187.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1187.t1
Unique Name	Ggra1187.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	734

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:113361..115562 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1187	Ggra1187	Gracilaria gracilis GNS1m male	gene	tig00000237_pilon 113361..115562 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1187.t1.stop1	Ggra1187.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000237_pilon 113361..113363 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1187.t1.CDS1	Ggra1187.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000237_pilon 113361..115562 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1187.t1.exon1	Ggra1187.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000237_pilon 113361..115562 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1187.t1.start1	Ggra1187.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000237_pilon 115560..115562 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1187.t1	Ggra1187.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000237_pilon 113361..115562 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:113361..115562-
coding sequence from alignment at tig00000237_pilon:113361..115562-

mRNA sequence

>Ggra1187.t1 ID=Ggra1187.t1|Name=Ggra1187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp
MERRGFLSSLIACLTLWTFSQALPQVESNLLPLRARRFVLSREFWQAVPG
LTSVREESSLVDPFTQFEGNEKLEGEAVQGAPDSQLSGSGETLDPQDTDQ
QPNDEVQLDSADPADPGVSTDSSDASTAETSIDSASSESGDVSAADTSAT
STTSTDSSEIATTDSSGLDKATEIAAPEVDTRDGSETDTADPDGISTTIV
DEKPSGEASTSEEDKEQAEQTDLQSSDTTESTTDLDSSPLLSNSTEGKND
TNAFKAFKLRQMSEADSSASEAFHLVTIFEEGAFTGPFADSPSSTNIDAI
SSSQTEKWYMESAYADRISFRLEYTPESSDYKISEPTIAVTSETGIEPVI
QNFQNDPENGEGSFSIVYRCLPEGPEESYISLHLQVTGTHSIDTAWKKVC
GRGRYEHMDFGFTSYNLGTVLFNKDGTYGTEEQKILEVGPLDTSTELTMK
LVPPAYTLDFKDPYVASDSDFVSVALRGVIAGGTVNSDEQTKFSVLYECQ
ATATANIVFSVAIPPWNNMTAMWRKDCGGKHSQSLLIGTSGPGSFEVVHE
GEVSPQYNITDSTYIGSAQDYVEEVPGNTDYKKFYITNSDDTSDIQVQTV
SMTMSDPSIVTPIVQTSMVSGYSYLSASGGMIRRKETKSLYLHFICKREG
KSLILVTLPILRYRNIEFGFIKECFEPKVHRHSGFLQTAGSIMGFMLLLA
VVGGGAGWVYWRRRSQGLGKKYTAVPTSERGLP*

spliced messenger RNA

>Ggra1187.t1 ID=Ggra1187.t1|Name=Ggra1187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:113361..115562- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGCCGGGGTTTCCTTTCGTCCCTCATAGCCTGCTTAACTCTATG
GACCTTTTCTCAAGCCCTTCCTCAAGTTGAATCTAATTTGCTGCCACTTC
GAGCACGTCGTTTCGTGTTAAGTCGTGAGTTTTGGCAAGCTGTACCGGGG
TTGACTTCCGTTCGTGAAGAATCATCACTGGTGGATCCATTTACACAGTT
TGAGGGAAACGAAAAACTTGAGGGAGAAGCGGTGCAAGGAGCCCCGGATT
CCCAACTATCTGGCTCAGGAGAAACGCTTGACCCACAAGACACCGACCAG
CAGCCAAACGATGAGGTGCAATTAGATTCTGCTGATCCTGCAGACCCGGG
AGTTTCTACCGATTCGAGTGACGCGAGCACAGCTGAAACATCGATAGACT
CCGCCAGTTCAGAGTCAGGTGATGTCAGCGCAGCGGATACGTCAGCCACT
TCAACAACGTCCACTGACTCATCTGAGATCGCCACAACGGATTCTTCAGG
ATTGGATAAGGCGACAGAAATAGCCGCACCTGAAGTTGATACAAGAGATG
GGAGCGAAACGGACACGGCAGACCCCGATGGCATTTCTACCACGATTGTG
GACGAAAAGCCCAGCGGCGAAGCATCTACTAGCGAGGAAGACAAGGAGCA
AGCTGAGCAGACGGACTTACAGTCATCAGATACCACAGAGAGTACCACGG
ACCTGGACTCATCCCCACTTCTTTCAAATTCAACTGAAGGTAAGAACGAT
ACGAACGCATTTAAGGCTTTCAAACTTCGTCAAATGTCGGAAGCCGATTC
TTCTGCAAGCGAAGCATTCCATCTCGTTACCATATTTGAAGAAGGTGCAT
TTACTGGCCCTTTTGCTGATAGCCCATCATCGACCAATATCGACGCCATC
TCTTCTTCCCAGACAGAGAAGTGGTATATGGAGAGTGCCTATGCGGATAG
GATCTCTTTTCGCCTCGAGTATACACCGGAGTCATCTGACTACAAGATTT
CAGAGCCTACAATCGCGGTAACTTCCGAGACTGGAATAGAGCCTGTGATA
CAAAATTTTCAGAACGATCCAGAAAACGGAGAAGGTTCTTTCTCTATCGT
ATATCGTTGTCTGCCTGAGGGACCAGAAGAATCTTACATTTCCCTTCACC
TCCAAGTGACTGGTACCCACAGTATCGATACTGCTTGGAAGAAAGTGTGT
GGGCGTGGGCGCTACGAGCATATGGACTTTGGGTTTACTTCCTATAATTT
GGGTACTGTTTTGTTCAACAAAGATGGCACATATGGAACGGAAGAACAGA
AGATACTGGAGGTTGGACCTTTGGATACTAGTACAGAACTTACTATGAAG
CTTGTACCGCCCGCGTATACGCTTGATTTCAAGGATCCCTATGTCGCTTC
GGATTCAGATTTTGTGTCGGTGGCATTGCGCGGTGTTATTGCTGGAGGAA
CGGTCAATAGTGATGAACAGACCAAGTTCTCGGTTCTATATGAATGCCAA
GCGACTGCGACGGCAAATATTGTGTTCTCGGTAGCGATTCCCCCATGGAA
CAACATGACTGCTATGTGGCGCAAGGATTGTGGTGGGAAACACTCCCAGT
CTTTACTCATTGGCACAAGTGGGCCAGGTTCCTTCGAAGTTGTGCACGAG
GGAGAAGTTAGTCCCCAGTACAATATTACGGACAGCACATATATTGGTAG
TGCCCAAGATTATGTAGAAGAAGTTCCGGGGAACACGGACTACAAGAAGT
TCTACATCACAAACAGCGATGATACATCAGATATTCAGGTGCAAACTGTT
TCCATGACGATGTCAGACCCGTCTATTGTTACTCCAATTGTTCAAACATC
CATGGTCTCTGGTTACTCGTACCTCTCGGCAAGTGGAGGTATGATTAGGC
GAAAGGAAACAAAGTCACTATACTTGCACTTCATCTGTAAGAGGGAAGGG
AAGTCTCTTATTCTAGTGACCCTTCCTATACTGAGGTATAGGAATATCGA
ATTTGGGTTCATCAAGGAGTGCTTTGAACCAAAGGTCCATCGTCATTCCG
GGTTTCTGCAAACAGCTGGTTCAATCATGGGATTCATGCTGCTGTTGGCA
GTGGTTGGCGGCGGGGCAGGATGGGTGTATTGGAGACGACGAAGTCAAGG
TTTGGGCAAGAAGTATACGGCTGTTCCTACGAGCGAGCGGGGTCTGCCCT
AG

protein sequence of Ggra1187.t1

>Ggra1187.t1 ID=Ggra1187.t1|Name=Ggra1187.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=734bp
MERRGFLSSLIACLTLWTFSQALPQVESNLLPLRARRFVLSREFWQAVPG
LTSVREESSLVDPFTQFEGNEKLEGEAVQGAPDSQLSGSGETLDPQDTDQ
QPNDEVQLDSADPADPGVSTDSSDASTAETSIDSASSESGDVSAADTSAT
STTSTDSSEIATTDSSGLDKATEIAAPEVDTRDGSETDTADPDGISTTIV
DEKPSGEASTSEEDKEQAEQTDLQSSDTTESTTDLDSSPLLSNSTEGKND
TNAFKAFKLRQMSEADSSASEAFHLVTIFEEGAFTGPFADSPSSTNIDAI
SSSQTEKWYMESAYADRISFRLEYTPESSDYKISEPTIAVTSETGIEPVI
QNFQNDPENGEGSFSIVYRCLPEGPEESYISLHLQVTGTHSIDTAWKKVC
GRGRYEHMDFGFTSYNLGTVLFNKDGTYGTEEQKILEVGPLDTSTELTMK
LVPPAYTLDFKDPYVASDSDFVSVALRGVIAGGTVNSDEQTKFSVLYECQ
ATATANIVFSVAIPPWNNMTAMWRKDCGGKHSQSLLIGTSGPGSFEVVHE
GEVSPQYNITDSTYIGSAQDYVEEVPGNTDYKKFYITNSDDTSDIQVQTV
SMTMSDPSIVTPIVQTSMVSGYSYLSASGGMIRRKETKSLYLHFICKREG
KSLILVTLPILRYRNIEFGFIKECFEPKVHRHSGFLQTAGSIMGFMLLLA
VVGGGAGWVYWRRRSQGLGKKYTAVPTSERGLP*

mRNA from alignment at tig00000237_pilon:113361..115562-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1187.t1 ID=Ggra1187.t1|Name=Ggra1187.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:113361..115562- (Gracilaria gracilis GNS1m male)
ATGGAGCGCCGGGGTTTCCTTTCGTCCCTCATAGCCTGCTTAACTCTATG
GACCTTTTCTCAAGCCCTTCCTCAAGTTGAATCTAATTTGCTGCCACTTC
GAGCACGTCGTTTCGTGTTAAGTCGTGAGTTTTGGCAAGCTGTACCGGGG
TTGACTTCCGTTCGTGAAGAATCATCACTGGTGGATCCATTTACACAGTT
TGAGGGAAACGAAAAACTTGAGGGAGAAGCGGTGCAAGGAGCCCCGGATT
CCCAACTATCTGGCTCAGGAGAAACGCTTGACCCACAAGACACCGACCAG
CAGCCAAACGATGAGGTGCAATTAGATTCTGCTGATCCTGCAGACCCGGG
AGTTTCTACCGATTCGAGTGACGCGAGCACAGCTGAAACATCGATAGACT
CCGCCAGTTCAGAGTCAGGTGATGTCAGCGCAGCGGATACGTCAGCCACT
TCAACAACGTCCACTGACTCATCTGAGATCGCCACAACGGATTCTTCAGG
ATTGGATAAGGCGACAGAAATAGCCGCACCTGAAGTTGATACAAGAGATG
GGAGCGAAACGGACACGGCAGACCCCGATGGCATTTCTACCACGATTGTG
GACGAAAAGCCCAGCGGCGAAGCATCTACTAGCGAGGAAGACAAGGAGCA
AGCTGAGCAGACGGACTTACAGTCATCAGATACCACAGAGAGTACCACGG
ACCTGGACTCATCCCCACTTCTTTCAAATTCAACTGAAGGTAAGAACGAT
ACGAACGCATTTAAGGCTTTCAAACTTCGTCAAATGTCGGAAGCCGATTC
TTCTGCAAGCGAAGCATTCCATCTCGTTACCATATTTGAAGAAGGTGCAT
TTACTGGCCCTTTTGCTGATAGCCCATCATCGACCAATATCGACGCCATC
TCTTCTTCCCAGACAGAGAAGTGGTATATGGAGAGTGCCTATGCGGATAG
GATCTCTTTTCGCCTCGAGTATACACCGGAGTCATCTGACTACAAGATTT
CAGAGCCTACAATCGCGGTAACTTCCGAGACTGGAATAGAGCCTGTGATA
CAAAATTTTCAGAACGATCCAGAAAACGGAGAAGGTTCTTTCTCTATCGT
ATATCGTTGTCTGCCTGAGGGACCAGAAGAATCTTACATTTCCCTTCACC
TCCAAGTGACTGGTACCCACAGTATCGATACTGCTTGGAAGAAAGTGTGT
GGGCGTGGGCGCTACGAGCATATGGACTTTGGGTTTACTTCCTATAATTT
GGGTACTGTTTTGTTCAACAAAGATGGCACATATGGAACGGAAGAACAGA
AGATACTGGAGGTTGGACCTTTGGATACTAGTACAGAACTTACTATGAAG
CTTGTACCGCCCGCGTATACGCTTGATTTCAAGGATCCCTATGTCGCTTC
GGATTCAGATTTTGTGTCGGTGGCATTGCGCGGTGTTATTGCTGGAGGAA
CGGTCAATAGTGATGAACAGACCAAGTTCTCGGTTCTATATGAATGCCAA
GCGACTGCGACGGCAAATATTGTGTTCTCGGTAGCGATTCCCCCATGGAA
CAACATGACTGCTATGTGGCGCAAGGATTGTGGTGGGAAACACTCCCAGT
CTTTACTCATTGGCACAAGTGGGCCAGGTTCCTTCGAAGTTGTGCACGAG
GGAGAAGTTAGTCCCCAGTACAATATTACGGACAGCACATATATTGGTAG
TGCCCAAGATTATGTAGAAGAAGTTCCGGGGAACACGGACTACAAGAAGT
TCTACATCACAAACAGCGATGATACATCAGATATTCAGGTGCAAACTGTT
TCCATGACGATGTCAGACCCGTCTATTGTTACTCCAATTGTTCAAACATC
CATGGTCTCTGGTTACTCGTACCTCTCGGCAAGTGGAGGTATGATTAGGC
GAAAGGAAACAAAGTCACTATACTTGCACTTCATCTGTAAGAGGGAAGGG
AAGTCTCTTATTCTAGTGACCCTTCCTATACTGAGGTATAGGAATATCGA
ATTTGGGTTCATCAAGGAGTGCTTTGAACCAAAGGTCCATCGTCATTCCG
GGTTTCTGCAAACAGCTGGTTCAATCATGGGATTCATGCTGCTGTTGGCA
GTGGTTGGCGGCGGGGCAGGATGGGTGTATTGGAGACGACGAAGTCAAGG
TTTGGGCAAGAAGTATACGGCTGTTCCTACGAGCGAGCGGGGTCTGCCCT
AG

Coding sequence (CDS) from alignment at tig00000237_pilon:113361..115562-

>Ggra1187.t1 ID=Ggra1187.t1|Name=Ggra1187.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:113361..115562- (Gracilaria gracilis GNS1m male)
ATGGAGCGCCGGGGTTTCCTTTCGTCCCTCATAGCCTGCTTAACTCTATG
GACCTTTTCTCAAGCCCTTCCTCAAGTTGAATCTAATTTGCTGCCACTTC
GAGCACGTCGTTTCGTGTTAAGTCGTGAGTTTTGGCAAGCTGTACCGGGG
TTGACTTCCGTTCGTGAAGAATCATCACTGGTGGATCCATTTACACAGTT
TGAGGGAAACGAAAAACTTGAGGGAGAAGCGGTGCAAGGAGCCCCGGATT
CCCAACTATCTGGCTCAGGAGAAACGCTTGACCCACAAGACACCGACCAG
CAGCCAAACGATGAGGTGCAATTAGATTCTGCTGATCCTGCAGACCCGGG
AGTTTCTACCGATTCGAGTGACGCGAGCACAGCTGAAACATCGATAGACT
CCGCCAGTTCAGAGTCAGGTGATGTCAGCGCAGCGGATACGTCAGCCACT
TCAACAACGTCCACTGACTCATCTGAGATCGCCACAACGGATTCTTCAGG
ATTGGATAAGGCGACAGAAATAGCCGCACCTGAAGTTGATACAAGAGATG
GGAGCGAAACGGACACGGCAGACCCCGATGGCATTTCTACCACGATTGTG
GACGAAAAGCCCAGCGGCGAAGCATCTACTAGCGAGGAAGACAAGGAGCA
AGCTGAGCAGACGGACTTACAGTCATCAGATACCACAGAGAGTACCACGG
ACCTGGACTCATCCCCACTTCTTTCAAATTCAACTGAAGGTAAGAACGAT
ACGAACGCATTTAAGGCTTTCAAACTTCGTCAAATGTCGGAAGCCGATTC
TTCTGCAAGCGAAGCATTCCATCTCGTTACCATATTTGAAGAAGGTGCAT
TTACTGGCCCTTTTGCTGATAGCCCATCATCGACCAATATCGACGCCATC
TCTTCTTCCCAGACAGAGAAGTGGTATATGGAGAGTGCCTATGCGGATAG
GATCTCTTTTCGCCTCGAGTATACACCGGAGTCATCTGACTACAAGATTT
CAGAGCCTACAATCGCGGTAACTTCCGAGACTGGAATAGAGCCTGTGATA
CAAAATTTTCAGAACGATCCAGAAAACGGAGAAGGTTCTTTCTCTATCGT
ATATCGTTGTCTGCCTGAGGGACCAGAAGAATCTTACATTTCCCTTCACC
TCCAAGTGACTGGTACCCACAGTATCGATACTGCTTGGAAGAAAGTGTGT
GGGCGTGGGCGCTACGAGCATATGGACTTTGGGTTTACTTCCTATAATTT
GGGTACTGTTTTGTTCAACAAAGATGGCACATATGGAACGGAAGAACAGA
AGATACTGGAGGTTGGACCTTTGGATACTAGTACAGAACTTACTATGAAG
CTTGTACCGCCCGCGTATACGCTTGATTTCAAGGATCCCTATGTCGCTTC
GGATTCAGATTTTGTGTCGGTGGCATTGCGCGGTGTTATTGCTGGAGGAA
CGGTCAATAGTGATGAACAGACCAAGTTCTCGGTTCTATATGAATGCCAA
GCGACTGCGACGGCAAATATTGTGTTCTCGGTAGCGATTCCCCCATGGAA
CAACATGACTGCTATGTGGCGCAAGGATTGTGGTGGGAAACACTCCCAGT
CTTTACTCATTGGCACAAGTGGGCCAGGTTCCTTCGAAGTTGTGCACGAG
GGAGAAGTTAGTCCCCAGTACAATATTACGGACAGCACATATATTGGTAG
TGCCCAAGATTATGTAGAAGAAGTTCCGGGGAACACGGACTACAAGAAGT
TCTACATCACAAACAGCGATGATACATCAGATATTCAGGTGCAAACTGTT
TCCATGACGATGTCAGACCCGTCTATTGTTACTCCAATTGTTCAAACATC
CATGGTCTCTGGTTACTCGTACCTCTCGGCAAGTGGAGGTATGATTAGGC
GAAAGGAAACAAAGTCACTATACTTGCACTTCATCTGTAAGAGGGAAGGG
AAGTCTCTTATTCTAGTGACCCTTCCTATACTGAGGTATAGGAATATCGA
ATTTGGGTTCATCAAGGAGTGCTTTGAACCAAAGGTCCATCGTCATTCCG
GGTTTCTGCAAACAGCTGGTTCAATCATGGGATTCATGCTGCTGTTGGCA
GTGGTTGGCGGCGGGGCAGGATGGGTGTATTGGAGACGACGAAGTCAAGG
TTTGGGCAAGAAGTATACGGCTGTTCCTACGAGCGAGCGGGGTCTGCCCT
AG