Ggra1186.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1186.t1
Unique NameGgra1186.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length354
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:112171..113232 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD14003
Preferred namePGP
PFAMsHydrolase_6,Hydrolase_like
Max annot lvl2759|Eukaryota
KEGG rclassRC00017,RC00151
KEGG koko:K01101,ko:K19269
KEGG ReactionR01334,R03024
KEGG Pathwayko00627,ko00630,ko01100,ko01110,ko01120,ko01130,ko01200,map00627,map00630,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00532
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237,GO:0044424,GO:0044444,GO:0044464
Evalue3.34e-154
EggNOG OGsCOG0647@1|root,KOG2882@2759|Eukaryota
EC3.1.3.18,3.1.3.41,3.1.3.48
Descriptionphosphoglycolate phosphatase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1186Ggra1186Gracilaria gracilis GNS1m malegenetig00000237_pilon 112171..113232 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1186.t1.start1Ggra1186.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 112171..112173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1186.t1.CDS1Ggra1186.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 112171..113232 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1186.t1.exon1Ggra1186.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 112171..113232 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1186.t1.stop1Ggra1186.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 113230..113232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1186.t1Ggra1186.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 112171..113232 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1186.t1 ID=Ggra1186.t1|Name=Ggra1186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=354bp
MAFVPAFSKSTTTFVPAEKFTTTKRHIFQSAKQAERSVVRGQPRMTVAPD
MASITQVAKLTSPSQLLSKTSIFIFDCDGVVWRGDSVIDRVPEVLEYVRS
LGKQVFFVTNNSTKSRAGYLKKFTKLGLDAQAEEIFSSSFAAAAYLEQTN
FKATGKKVYVIGEVGIPEELDLLGIPYIGGPADAEKQPNMAFGGRLEHDH
DVGAVIVGFDRHINYYKIQYAQLCINENPGCKFIATNLDAVTHLTDAQEW
AGNGSMVGAIKGCTGKEPILVGKPSSLMIDYIVSKYGISRDEICMVGDRL
DTDVLFGKDNGLSSVLTLTGVTTEDKLLSPNNKIKPDYYVNGIADFLPKP
ELN*
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spliced messenger RNA

>Ggra1186.t1 ID=Ggra1186.t1|Name=Ggra1186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000237_pilon:112171..113232+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTTCCTGCATTTTCTAAGAGCACCACAACGTTTGTTCCTGC
CGAGAAGTTCACTACCACCAAACGCCATATTTTCCAATCTGCAAAGCAAG
CCGAGCGAAGCGTGGTTCGTGGACAACCTCGTATGACTGTGGCTCCAGAT
ATGGCTTCGATTACACAGGTGGCGAAGCTCACAAGCCCATCCCAACTCCT
GTCGAAAACAAGTATTTTCATTTTCGATTGCGATGGTGTTGTCTGGCGTG
GCGATTCTGTCATTGACCGAGTTCCCGAAGTTCTGGAGTATGTGCGCTCA
CTAGGGAAACAAGTATTCTTCGTCACAAATAACTCCACGAAAAGCCGGGC
CGGATATCTAAAGAAGTTTACAAAGCTTGGGTTGGATGCCCAAGCAGAGG
AGATATTCTCCTCTAGCTTCGCAGCAGCTGCCTATCTCGAGCAGACTAAT
TTCAAAGCCACTGGAAAAAAGGTGTACGTCATCGGCGAGGTGGGTATTCC
GGAGGAACTAGACCTGCTTGGTATTCCGTACATTGGTGGCCCGGCTGATG
CTGAAAAACAACCAAACATGGCTTTTGGCGGTCGACTGGAACACGATCAT
GATGTAGGAGCAGTCATTGTAGGATTTGATCGGCACATCAACTACTACAA
GATTCAATATGCACAGCTATGTATTAACGAGAACCCGGGTTGCAAGTTCA
TCGCTACTAATCTTGATGCTGTCACACACTTGACGGATGCCCAAGAGTGG
GCTGGCAATGGCTCCATGGTTGGTGCGATCAAAGGCTGTACGGGTAAGGA
ACCAATCTTGGTAGGCAAGCCGTCTTCGCTCATGATTGATTACATTGTCT
CTAAGTACGGTATATCTCGTGACGAAATCTGTATGGTTGGCGACCGACTT
GACACTGATGTTTTGTTCGGAAAGGACAATGGGTTATCCAGCGTGTTGAC
TCTGACTGGTGTGACAACCGAAGATAAGCTCTTGTCTCCTAATAACAAAA
TCAAACCGGACTACTACGTCAATGGCATAGCGGACTTTCTTCCGAAACCC
GAACTCAACTGA
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protein sequence of Ggra1186.t1

>Ggra1186.t1 ID=Ggra1186.t1|Name=Ggra1186.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=354bp
MAFVPAFSKSTTTFVPAEKFTTTKRHIFQSAKQAERSVVRGQPRMTVAPD
MASITQVAKLTSPSQLLSKTSIFIFDCDGVVWRGDSVIDRVPEVLEYVRS
LGKQVFFVTNNSTKSRAGYLKKFTKLGLDAQAEEIFSSSFAAAAYLEQTN
FKATGKKVYVIGEVGIPEELDLLGIPYIGGPADAEKQPNMAFGGRLEHDH
DVGAVIVGFDRHINYYKIQYAQLCINENPGCKFIATNLDAVTHLTDAQEW
AGNGSMVGAIKGCTGKEPILVGKPSSLMIDYIVSKYGISRDEICMVGDRL
DTDVLFGKDNGLSSVLTLTGVTTEDKLLSPNNKIKPDYYVNGIADFLPKP
ELN*
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mRNA from alignment at tig00000237_pilon:112171..113232+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1186.t1 ID=Ggra1186.t1|Name=Ggra1186.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1062bp|location=Sequence derived from alignment at tig00000237_pilon:112171..113232+ (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTTCCTGCATTTTCTAAGAGCACCACAACGTTTGTTCCTGC
CGAGAAGTTCACTACCACCAAACGCCATATTTTCCAATCTGCAAAGCAAG
CCGAGCGAAGCGTGGTTCGTGGACAACCTCGTATGACTGTGGCTCCAGAT
ATGGCTTCGATTACACAGGTGGCGAAGCTCACAAGCCCATCCCAACTCCT
GTCGAAAACAAGTATTTTCATTTTCGATTGCGATGGTGTTGTCTGGCGTG
GCGATTCTGTCATTGACCGAGTTCCCGAAGTTCTGGAGTATGTGCGCTCA
CTAGGGAAACAAGTATTCTTCGTCACAAATAACTCCACGAAAAGCCGGGC
CGGATATCTAAAGAAGTTTACAAAGCTTGGGTTGGATGCCCAAGCAGAGG
AGATATTCTCCTCTAGCTTCGCAGCAGCTGCCTATCTCGAGCAGACTAAT
TTCAAAGCCACTGGAAAAAAGGTGTACGTCATCGGCGAGGTGGGTATTCC
GGAGGAACTAGACCTGCTTGGTATTCCGTACATTGGTGGCCCGGCTGATG
CTGAAAAACAACCAAACATGGCTTTTGGCGGTCGACTGGAACACGATCAT
GATGTAGGAGCAGTCATTGTAGGATTTGATCGGCACATCAACTACTACAA
GATTCAATATGCACAGCTATGTATTAACGAGAACCCGGGTTGCAAGTTCA
TCGCTACTAATCTTGATGCTGTCACACACTTGACGGATGCCCAAGAGTGG
GCTGGCAATGGCTCCATGGTTGGTGCGATCAAAGGCTGTACGGGTAAGGA
ACCAATCTTGGTAGGCAAGCCGTCTTCGCTCATGATTGATTACATTGTCT
CTAAGTACGGTATATCTCGTGACGAAATCTGTATGGTTGGCGACCGACTT
GACACTGATGTTTTGTTCGGAAAGGACAATGGGTTATCCAGCGTGTTGAC
TCTGACTGGTGTGACAACCGAAGATAAGCTCTTGTCTCCTAATAACAAAA
TCAAACCGGACTACTACGTCAATGGCATAGCGGACTTTCTTCCGAAACCC
GAACTCAACTGA
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Coding sequence (CDS) from alignment at tig00000237_pilon:112171..113232+

>Ggra1186.t1 ID=Ggra1186.t1|Name=Ggra1186.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1062bp|location=Sequence derived from alignment at tig00000237_pilon:112171..113232+ (Gracilaria gracilis GNS1m male)
ATGGCTTTTGTTCCTGCATTTTCTAAGAGCACCACAACGTTTGTTCCTGC
CGAGAAGTTCACTACCACCAAACGCCATATTTTCCAATCTGCAAAGCAAG
CCGAGCGAAGCGTGGTTCGTGGACAACCTCGTATGACTGTGGCTCCAGAT
ATGGCTTCGATTACACAGGTGGCGAAGCTCACAAGCCCATCCCAACTCCT
GTCGAAAACAAGTATTTTCATTTTCGATTGCGATGGTGTTGTCTGGCGTG
GCGATTCTGTCATTGACCGAGTTCCCGAAGTTCTGGAGTATGTGCGCTCA
CTAGGGAAACAAGTATTCTTCGTCACAAATAACTCCACGAAAAGCCGGGC
CGGATATCTAAAGAAGTTTACAAAGCTTGGGTTGGATGCCCAAGCAGAGG
AGATATTCTCCTCTAGCTTCGCAGCAGCTGCCTATCTCGAGCAGACTAAT
TTCAAAGCCACTGGAAAAAAGGTGTACGTCATCGGCGAGGTGGGTATTCC
GGAGGAACTAGACCTGCTTGGTATTCCGTACATTGGTGGCCCGGCTGATG
CTGAAAAACAACCAAACATGGCTTTTGGCGGTCGACTGGAACACGATCAT
GATGTAGGAGCAGTCATTGTAGGATTTGATCGGCACATCAACTACTACAA
GATTCAATATGCACAGCTATGTATTAACGAGAACCCGGGTTGCAAGTTCA
TCGCTACTAATCTTGATGCTGTCACACACTTGACGGATGCCCAAGAGTGG
GCTGGCAATGGCTCCATGGTTGGTGCGATCAAAGGCTGTACGGGTAAGGA
ACCAATCTTGGTAGGCAAGCCGTCTTCGCTCATGATTGATTACATTGTCT
CTAAGTACGGTATATCTCGTGACGAAATCTGTATGGTTGGCGACCGACTT
GACACTGATGTTTTGTTCGGAAAGGACAATGGGTTATCCAGCGTGTTGAC
TCTGACTGGTGTGACAACCGAAGATAAGCTCTTGTCTCCTAATAACAAAA
TCAAACCGGACTACTACGTCAATGGCATAGCGGACTTTCTTCCGAAACCC
GAACTCAACTGA
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