Ggra1185.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1185.t1
Unique Name	Ggra1185.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	774

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:109268..111667 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_11635T0
PFAMs	AAA
Max annot lvl	4776\|Peronosporales
KEGG ko	ko:K14571
KEGG Pathway	ko03008,map03008
Evalue	1.4e-213
EggNOG OGs	COG0464@1\|root,KOG0733@2759\|Eukaryota,3QENJ@4776\|Peronosporales
Description	Holliday junction DNA helicase ruvB N-terminus
COG category	O
BRITE	ko00000,ko00001,ko03009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1185	Ggra1185	Gracilaria gracilis GNS1m male	gene	tig00000237_pilon 109268..111667 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1	Ggra1185.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000237_pilon 109268..111667 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1.start1	Ggra1185.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000237_pilon 109268..109270 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1.CDS1	Ggra1185.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000237_pilon 109268..109341 +
Ggra1185.t1.CDS2	Ggra1185.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000237_pilon 109420..111667 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1.exon1	Ggra1185.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000237_pilon 109268..109341 +
Ggra1185.t1.exon2	Ggra1185.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000237_pilon 109420..111667 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1.intron1	Ggra1185.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000237_pilon 109342..109419 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1185.t1.stop1	Ggra1185.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000237_pilon 111665..111667 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:109268..111667+
coding sequence from alignment at tig00000237_pilon:109268..111667+

mRNA sequence

>Ggra1185.t1 ID=Ggra1185.t1|Name=Ggra1185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp
MTVRRGAVKDKRAVSALVDAIRAGGLQRDDLEGAIQLLSRTLPDAARLPQ
PALRILAKNSMRQASKIVPVQPLESPPRPVPAARPDFAEALKTPEQAANS
NDLLPSVRPKTPGGTGSNIRKRRRLSRAPLDGGEPFEQSRIQSFQVSRPC
ERLDDVGGISAVLETIRELVEWPLVHIRLYGHLGVSPPRGILLHGPPGCG
KTLLAHAIAGELGVSFLRVSGPEIVSGMSGESERKLRGLFSEAVRLQPSI
IFIDEVDAIASRREGASKDMERRIVSQLLSCVDGLSLQNNEANGKEAECQ
SEISLKPDGHGMDERKEREGKSSNPDSFTSVIVIAATNRPESLEPALRRA
GRFDREIELGAPDQEARGAILKKLCRSLRLGGDFDVETLAKRTAGYVGAD
LHLLTKEAGLACIRRLAKNPALKSWFCRGLEQNADGLGETNRSMTDQERE
GCAIDMNDFVEALETTQPSALREGFATRPNVSWANIGSLEEVREEMMMAI
VQPIRRPELFTSLGLHAPAGVLLYGPPGCGKTLLAKAVASESGANFISVK
GPELLSKYVGDSELAVRKVFARARSSAPCIIFFDELDALAPRRGAGGGSD
SSGASERVVNMLLTEMDGFSERKQVFLIAATNRPDIIDPAMLRPGRLDKL
VYVPLPDADGRASILRTLIKGVKIANTVNVDLLAKNPSCNGYSGADIQAL
IRTAGENCLREEMGAMTDREETQMTQIEQRHFDYALKIVLPSVSSRDAER
YRHMENWLRKTRGHLKKESSVEE*

spliced messenger RNA

>Ggra1185.t1 ID=Ggra1185.t1|Name=Ggra1185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2322bp|location=Sequence derived from alignment at tig00000237_pilon:109268..111667+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGTGCGGCGTGGAGCAGTTAAAGACAAGAGAGCTGTCTCTGCTCT
CGTTGATGCAATACGTGCTGGCGGCTTGCAACGTGATGACCTTGAAGGGG
CAATTCAGCTCTTATCTCGAACACTACCGGATGCTGCCCGTCTTCCTCAA
CCAGCTCTGAGGATACTCGCAAAGAACTCTATGCGTCAAGCAAGCAAAAT
TGTCCCTGTCCAACCATTAGAAAGTCCACCGCGCCCTGTCCCGGCAGCCA
GGCCAGATTTCGCTGAGGCTCTGAAGACGCCAGAGCAAGCCGCCAATTCC
AATGATCTTCTACCATCCGTTCGCCCAAAGACCCCAGGAGGCACAGGTTC
AAATATTCGCAAGAGAAGACGTTTATCTCGAGCTCCCCTTGACGGCGGGG
AACCCTTTGAGCAATCACGAATACAGTCGTTTCAAGTTTCACGACCTTGC
GAGCGACTTGATGATGTTGGCGGCATTTCAGCTGTTCTAGAAACGATTCG
AGAACTTGTTGAGTGGCCACTCGTTCATATTCGCCTTTACGGCCATTTGG
GGGTCAGCCCTCCAAGAGGTATCCTGCTGCATGGACCTCCAGGCTGCGGG
AAGACACTACTTGCACATGCCATCGCAGGTGAACTTGGCGTATCGTTTTT
GCGGGTTTCCGGACCTGAAATTGTTTCCGGGATGTCTGGCGAGAGTGAAC
GTAAGCTACGAGGACTTTTTTCAGAAGCAGTTCGTTTGCAGCCAAGCATC
ATATTCATAGATGAAGTCGATGCTATTGCTTCCAGAAGAGAAGGTGCGAG
CAAAGATATGGAAAGGCGAATTGTTTCGCAACTGCTTTCATGTGTTGATG
GACTGTCCTTACAAAACAATGAAGCTAACGGAAAAGAAGCCGAATGTCAA
AGTGAAATATCGTTGAAGCCTGATGGCCACGGAATGGATGAACGAAAGGA
AAGAGAAGGAAAGAGTTCAAACCCTGACTCTTTTACTTCAGTTATAGTCA
TTGCGGCCACAAATCGACCTGAGTCTCTTGAGCCCGCTTTGAGAAGAGCT
GGTCGTTTTGATCGAGAGATTGAACTAGGAGCACCAGACCAGGAGGCCAG
AGGTGCAATTTTGAAGAAGCTTTGTCGCAGCTTGAGACTAGGGGGTGATT
TTGACGTTGAGACTCTGGCAAAACGCACTGCAGGGTATGTGGGAGCCGAC
TTGCATCTCTTGACGAAAGAGGCAGGGCTCGCTTGTATTAGACGTCTTGC
CAAAAATCCTGCTTTAAAGTCTTGGTTTTGCCGGGGACTAGAACAAAATG
CTGATGGTCTCGGGGAAACGAATCGCAGTATGACAGACCAGGAACGAGAA
GGATGCGCAATTGATATGAACGACTTTGTAGAAGCACTTGAGACGACACA
GCCCTCTGCTTTGCGAGAAGGATTTGCGACAAGGCCAAATGTTTCTTGGG
CGAATATCGGTTCCCTGGAGGAAGTTCGTGAAGAAATGATGATGGCAATT
GTACAGCCTATTCGAAGACCAGAACTTTTCACTTCACTGGGACTGCATGC
ACCGGCTGGAGTGCTACTATATGGTCCCCCTGGGTGTGGGAAAACTCTAC
TCGCTAAGGCTGTGGCTTCGGAGAGTGGAGCCAACTTTATCTCCGTGAAG
GGGCCGGAACTGTTAAGCAAGTACGTTGGAGACAGCGAGTTAGCTGTGAG
AAAGGTTTTTGCTCGAGCTCGTTCCAGTGCACCGTGCATCATTTTCTTCG
ATGAATTAGATGCTCTTGCCCCTCGACGTGGTGCTGGAGGTGGCAGTGAC
TCGTCTGGAGCTTCGGAGAGGGTTGTCAATATGCTTCTCACCGAAATGGA
TGGCTTTTCGGAACGGAAACAAGTGTTCTTAATCGCTGCCACCAATAGAC
CAGACATAATAGATCCTGCTATGCTACGACCAGGTCGGCTGGACAAACTT
GTATACGTCCCGCTCCCAGATGCCGATGGTCGTGCAAGTATCCTTCGTAC
TTTAATCAAGGGTGTGAAGATTGCAAACACCGTTAACGTTGACTTACTCG
CGAAGAACCCCTCCTGCAATGGTTACTCAGGGGCTGACATACAAGCACTA
ATCAGGACCGCCGGTGAGAATTGTTTGAGGGAAGAAATGGGGGCCATGAC
AGATCGTGAAGAGACCCAAATGACCCAAATCGAGCAACGGCACTTTGATT
ACGCTTTAAAGATTGTTTTGCCATCGGTGTCAAGTCGTGATGCTGAGCGC
TATCGACATATGGAAAACTGGCTGAGAAAGACTCGCGGGCATTTGAAGAA
GGAAAGTTCTGTCGAGGAGTAG

protein sequence of Ggra1185.t1

>Ggra1185.t1 ID=Ggra1185.t1|Name=Ggra1185.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=774bp
MTVRRGAVKDKRAVSALVDAIRAGGLQRDDLEGAIQLLSRTLPDAARLPQ
PALRILAKNSMRQASKIVPVQPLESPPRPVPAARPDFAEALKTPEQAANS
NDLLPSVRPKTPGGTGSNIRKRRRLSRAPLDGGEPFEQSRIQSFQVSRPC
ERLDDVGGISAVLETIRELVEWPLVHIRLYGHLGVSPPRGILLHGPPGCG
KTLLAHAIAGELGVSFLRVSGPEIVSGMSGESERKLRGLFSEAVRLQPSI
IFIDEVDAIASRREGASKDMERRIVSQLLSCVDGLSLQNNEANGKEAECQ
SEISLKPDGHGMDERKEREGKSSNPDSFTSVIVIAATNRPESLEPALRRA
GRFDREIELGAPDQEARGAILKKLCRSLRLGGDFDVETLAKRTAGYVGAD
LHLLTKEAGLACIRRLAKNPALKSWFCRGLEQNADGLGETNRSMTDQERE
GCAIDMNDFVEALETTQPSALREGFATRPNVSWANIGSLEEVREEMMMAI
VQPIRRPELFTSLGLHAPAGVLLYGPPGCGKTLLAKAVASESGANFISVK
GPELLSKYVGDSELAVRKVFARARSSAPCIIFFDELDALAPRRGAGGGSD
SSGASERVVNMLLTEMDGFSERKQVFLIAATNRPDIIDPAMLRPGRLDKL
VYVPLPDADGRASILRTLIKGVKIANTVNVDLLAKNPSCNGYSGADIQAL
IRTAGENCLREEMGAMTDREETQMTQIEQRHFDYALKIVLPSVSSRDAER
YRHMENWLRKTRGHLKKESSVEE*

mRNA from alignment at tig00000237_pilon:109268..111667+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1185.t1 ID=Ggra1185.t1|Name=Ggra1185.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2400bp|location=Sequence derived from alignment at tig00000237_pilon:109268..111667+ (Gracilaria gracilis GNS1m male)
ATGACTGTGCGGCGTGGAGCAGTTAAAGACAAGAGAGCTGTCTCTGCTCT
CGTTGATGCAATACGTGCTGGCGGGTGAGTCAATGATCACATTTCGACAA
CAACTAAGCATGGTCTAACCACTATAAAACACTTATGCCCAACCTTTAAC
AGCTTGCAACGTGATGACCTTGAAGGGGCAATTCAGCTCTTATCTCGAAC
ACTACCGGATGCTGCCCGTCTTCCTCAACCAGCTCTGAGGATACTCGCAA
AGAACTCTATGCGTCAAGCAAGCAAAATTGTCCCTGTCCAACCATTAGAA
AGTCCACCGCGCCCTGTCCCGGCAGCCAGGCCAGATTTCGCTGAGGCTCT
GAAGACGCCAGAGCAAGCCGCCAATTCCAATGATCTTCTACCATCCGTTC
GCCCAAAGACCCCAGGAGGCACAGGTTCAAATATTCGCAAGAGAAGACGT
TTATCTCGAGCTCCCCTTGACGGCGGGGAACCCTTTGAGCAATCACGAAT
ACAGTCGTTTCAAGTTTCACGACCTTGCGAGCGACTTGATGATGTTGGCG
GCATTTCAGCTGTTCTAGAAACGATTCGAGAACTTGTTGAGTGGCCACTC
GTTCATATTCGCCTTTACGGCCATTTGGGGGTCAGCCCTCCAAGAGGTAT
CCTGCTGCATGGACCTCCAGGCTGCGGGAAGACACTACTTGCACATGCCA
TCGCAGGTGAACTTGGCGTATCGTTTTTGCGGGTTTCCGGACCTGAAATT
GTTTCCGGGATGTCTGGCGAGAGTGAACGTAAGCTACGAGGACTTTTTTC
AGAAGCAGTTCGTTTGCAGCCAAGCATCATATTCATAGATGAAGTCGATG
CTATTGCTTCCAGAAGAGAAGGTGCGAGCAAAGATATGGAAAGGCGAATT
GTTTCGCAACTGCTTTCATGTGTTGATGGACTGTCCTTACAAAACAATGA
AGCTAACGGAAAAGAAGCCGAATGTCAAAGTGAAATATCGTTGAAGCCTG
ATGGCCACGGAATGGATGAACGAAAGGAAAGAGAAGGAAAGAGTTCAAAC
CCTGACTCTTTTACTTCAGTTATAGTCATTGCGGCCACAAATCGACCTGA
GTCTCTTGAGCCCGCTTTGAGAAGAGCTGGTCGTTTTGATCGAGAGATTG
AACTAGGAGCACCAGACCAGGAGGCCAGAGGTGCAATTTTGAAGAAGCTT
TGTCGCAGCTTGAGACTAGGGGGTGATTTTGACGTTGAGACTCTGGCAAA
ACGCACTGCAGGGTATGTGGGAGCCGACTTGCATCTCTTGACGAAAGAGG
CAGGGCTCGCTTGTATTAGACGTCTTGCCAAAAATCCTGCTTTAAAGTCT
TGGTTTTGCCGGGGACTAGAACAAAATGCTGATGGTCTCGGGGAAACGAA
TCGCAGTATGACAGACCAGGAACGAGAAGGATGCGCAATTGATATGAACG
ACTTTGTAGAAGCACTTGAGACGACACAGCCCTCTGCTTTGCGAGAAGGA
TTTGCGACAAGGCCAAATGTTTCTTGGGCGAATATCGGTTCCCTGGAGGA
AGTTCGTGAAGAAATGATGATGGCAATTGTACAGCCTATTCGAAGACCAG
AACTTTTCACTTCACTGGGACTGCATGCACCGGCTGGAGTGCTACTATAT
GGTCCCCCTGGGTGTGGGAAAACTCTACTCGCTAAGGCTGTGGCTTCGGA
GAGTGGAGCCAACTTTATCTCCGTGAAGGGGCCGGAACTGTTAAGCAAGT
ACGTTGGAGACAGCGAGTTAGCTGTGAGAAAGGTTTTTGCTCGAGCTCGT
TCCAGTGCACCGTGCATCATTTTCTTCGATGAATTAGATGCTCTTGCCCC
TCGACGTGGTGCTGGAGGTGGCAGTGACTCGTCTGGAGCTTCGGAGAGGG
TTGTCAATATGCTTCTCACCGAAATGGATGGCTTTTCGGAACGGAAACAA
GTGTTCTTAATCGCTGCCACCAATAGACCAGACATAATAGATCCTGCTAT
GCTACGACCAGGTCGGCTGGACAAACTTGTATACGTCCCGCTCCCAGATG
CCGATGGTCGTGCAAGTATCCTTCGTACTTTAATCAAGGGTGTGAAGATT
GCAAACACCGTTAACGTTGACTTACTCGCGAAGAACCCCTCCTGCAATGG
TTACTCAGGGGCTGACATACAAGCACTAATCAGGACCGCCGGTGAGAATT
GTTTGAGGGAAGAAATGGGGGCCATGACAGATCGTGAAGAGACCCAAATG
ACCCAAATCGAGCAACGGCACTTTGATTACGCTTTAAAGATTGTTTTGCC
ATCGGTGTCAAGTCGTGATGCTGAGCGCTATCGACATATGGAAAACTGGC
TGAGAAAGACTCGCGGGCATTTGAAGAAGGAAAGTTCTGTCGAGGAGTAG

Coding sequence (CDS) from alignment at tig00000237_pilon:109268..111667+

>Ggra1185.t1 ID=Ggra1185.t1|Name=Ggra1185.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2322bp|location=Sequence derived from alignment at tig00000237_pilon:109268..111667+ (Gracilaria gracilis GNS1m male)
ATGACTGTGCGGCGTGGAGCAGTTAAAGACAAGAGAGCTGTCTCTGCTCT
CGTTGATGCAATACGTGCTGGCGGCTTGCAACGTGATGACCTTGAAGGGG
CAATTCAGCTCTTATCTCGAACACTACCGGATGCTGCCCGTCTTCCTCAA
CCAGCTCTGAGGATACTCGCAAAGAACTCTATGCGTCAAGCAAGCAAAAT
TGTCCCTGTCCAACCATTAGAAAGTCCACCGCGCCCTGTCCCGGCAGCCA
GGCCAGATTTCGCTGAGGCTCTGAAGACGCCAGAGCAAGCCGCCAATTCC
AATGATCTTCTACCATCCGTTCGCCCAAAGACCCCAGGAGGCACAGGTTC
AAATATTCGCAAGAGAAGACGTTTATCTCGAGCTCCCCTTGACGGCGGGG
AACCCTTTGAGCAATCACGAATACAGTCGTTTCAAGTTTCACGACCTTGC
GAGCGACTTGATGATGTTGGCGGCATTTCAGCTGTTCTAGAAACGATTCG
AGAACTTGTTGAGTGGCCACTCGTTCATATTCGCCTTTACGGCCATTTGG
GGGTCAGCCCTCCAAGAGGTATCCTGCTGCATGGACCTCCAGGCTGCGGG
AAGACACTACTTGCACATGCCATCGCAGGTGAACTTGGCGTATCGTTTTT
GCGGGTTTCCGGACCTGAAATTGTTTCCGGGATGTCTGGCGAGAGTGAAC
GTAAGCTACGAGGACTTTTTTCAGAAGCAGTTCGTTTGCAGCCAAGCATC
ATATTCATAGATGAAGTCGATGCTATTGCTTCCAGAAGAGAAGGTGCGAG
CAAAGATATGGAAAGGCGAATTGTTTCGCAACTGCTTTCATGTGTTGATG
GACTGTCCTTACAAAACAATGAAGCTAACGGAAAAGAAGCCGAATGTCAA
AGTGAAATATCGTTGAAGCCTGATGGCCACGGAATGGATGAACGAAAGGA
AAGAGAAGGAAAGAGTTCAAACCCTGACTCTTTTACTTCAGTTATAGTCA
TTGCGGCCACAAATCGACCTGAGTCTCTTGAGCCCGCTTTGAGAAGAGCT
GGTCGTTTTGATCGAGAGATTGAACTAGGAGCACCAGACCAGGAGGCCAG
AGGTGCAATTTTGAAGAAGCTTTGTCGCAGCTTGAGACTAGGGGGTGATT
TTGACGTTGAGACTCTGGCAAAACGCACTGCAGGGTATGTGGGAGCCGAC
TTGCATCTCTTGACGAAAGAGGCAGGGCTCGCTTGTATTAGACGTCTTGC
CAAAAATCCTGCTTTAAAGTCTTGGTTTTGCCGGGGACTAGAACAAAATG
CTGATGGTCTCGGGGAAACGAATCGCAGTATGACAGACCAGGAACGAGAA
GGATGCGCAATTGATATGAACGACTTTGTAGAAGCACTTGAGACGACACA
GCCCTCTGCTTTGCGAGAAGGATTTGCGACAAGGCCAAATGTTTCTTGGG
CGAATATCGGTTCCCTGGAGGAAGTTCGTGAAGAAATGATGATGGCAATT
GTACAGCCTATTCGAAGACCAGAACTTTTCACTTCACTGGGACTGCATGC
ACCGGCTGGAGTGCTACTATATGGTCCCCCTGGGTGTGGGAAAACTCTAC
TCGCTAAGGCTGTGGCTTCGGAGAGTGGAGCCAACTTTATCTCCGTGAAG
GGGCCGGAACTGTTAAGCAAGTACGTTGGAGACAGCGAGTTAGCTGTGAG
AAAGGTTTTTGCTCGAGCTCGTTCCAGTGCACCGTGCATCATTTTCTTCG
ATGAATTAGATGCTCTTGCCCCTCGACGTGGTGCTGGAGGTGGCAGTGAC
TCGTCTGGAGCTTCGGAGAGGGTTGTCAATATGCTTCTCACCGAAATGGA
TGGCTTTTCGGAACGGAAACAAGTGTTCTTAATCGCTGCCACCAATAGAC
CAGACATAATAGATCCTGCTATGCTACGACCAGGTCGGCTGGACAAACTT
GTATACGTCCCGCTCCCAGATGCCGATGGTCGTGCAAGTATCCTTCGTAC
TTTAATCAAGGGTGTGAAGATTGCAAACACCGTTAACGTTGACTTACTCG
CGAAGAACCCCTCCTGCAATGGTTACTCAGGGGCTGACATACAAGCACTA
ATCAGGACCGCCGGTGAGAATTGTTTGAGGGAAGAAATGGGGGCCATGAC
AGATCGTGAAGAGACCCAAATGACCCAAATCGAGCAACGGCACTTTGATT
ACGCTTTAAAGATTGTTTTGCCATCGGTGTCAAGTCGTGATGCTGAGCGC
TATCGACATATGGAAAACTGGCTGAGAAAGACTCGCGGGCATTTGAAGAA
GGAAAGTTCTGTCGAGGAGTAG