Ggra1182.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1182.t1
Unique NameGgra1182.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000237_piloncontigtig00000237_pilon:98984..99547 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1182Ggra1182Gracilaria gracilis GNS1m malegenetig00000237_pilon 98984..99547 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1182.t1.start1Ggra1182.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000237_pilon 98984..98986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1182.t1.CDS1Ggra1182.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000237_pilon 98984..99547 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1182.t1.exon1Ggra1182.t1.exon1Gracilaria gracilis GNS1m maleexontig00000237_pilon 98984..99547 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1182.t1.stop1Ggra1182.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000237_pilon 99545..99547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1182.t1Ggra1182.t1Gracilaria gracilis GNS1m malepolypeptidetig00000237_pilon 98984..99547 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1182.t1 ID=Ggra1182.t1|Name=Ggra1182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MAFVSSFVGVKSPRCMDLVSKAVSVKQTPTITASLSRREVLKTLSAIPII
AELLPLPALADRTAVGAKRSFDRYHPRILDLIETMKQIRSFVTSEDVSGA
ATLITDKQFDVKGRRALSIYATGFSDNYVGQRSRDMLKYVDGFYKELAIV
ADGKDMAEHYGKAVDLLDAYYREARLAPQELSGLALD*
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spliced messenger RNA

>Ggra1182.t1 ID=Ggra1182.t1|Name=Ggra1182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000237_pilon:98984..99547+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCGTATCGTCTTTTGTCGGAGTTAAATCCCCCCGTTGTATGGA
TTTGGTATCGAAGGCTGTCTCAGTTAAGCAGACGCCGACCATTACCGCAA
GCTTATCCAGGCGAGAAGTTTTGAAAACCTTATCTGCAATCCCCATTATA
GCGGAGTTGTTGCCACTACCAGCCTTAGCTGACCGAACTGCAGTTGGCGC
TAAGAGATCCTTCGACCGTTATCATCCTCGTATTCTGGACCTCATAGAAA
CAATGAAACAGATTCGCTCGTTCGTCACGAGCGAAGATGTTTCTGGTGCC
GCCACTCTAATAACTGACAAGCAGTTTGATGTAAAAGGACGTCGTGCTCT
AAGCATATATGCGACTGGTTTTTCAGATAACTATGTTGGACAAAGGAGTA
GAGATATGTTGAAATATGTGGATGGATTCTACAAGGAACTCGCAATTGTT
GCGGACGGAAAGGACATGGCTGAACACTACGGGAAAGCGGTTGATCTATT
GGACGCGTACTATCGAGAAGCAAGGTTAGCCCCACAAGAGTTGTCCGGCC
TGGCTTTGGATTAA
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protein sequence of Ggra1182.t1

>Ggra1182.t1 ID=Ggra1182.t1|Name=Ggra1182.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MAFVSSFVGVKSPRCMDLVSKAVSVKQTPTITASLSRREVLKTLSAIPII
AELLPLPALADRTAVGAKRSFDRYHPRILDLIETMKQIRSFVTSEDVSGA
ATLITDKQFDVKGRRALSIYATGFSDNYVGQRSRDMLKYVDGFYKELAIV
ADGKDMAEHYGKAVDLLDAYYREARLAPQELSGLALD*
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mRNA from alignment at tig00000237_pilon:98984..99547+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1182.t1 ID=Ggra1182.t1|Name=Ggra1182.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000237_pilon:98984..99547+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTATCGTCTTTTGTCGGAGTTAAATCCCCCCGTTGTATGGA
TTTGGTATCGAAGGCTGTCTCAGTTAAGCAGACGCCGACCATTACCGCAA
GCTTATCCAGGCGAGAAGTTTTGAAAACCTTATCTGCAATCCCCATTATA
GCGGAGTTGTTGCCACTACCAGCCTTAGCTGACCGAACTGCAGTTGGCGC
TAAGAGATCCTTCGACCGTTATCATCCTCGTATTCTGGACCTCATAGAAA
CAATGAAACAGATTCGCTCGTTCGTCACGAGCGAAGATGTTTCTGGTGCC
GCCACTCTAATAACTGACAAGCAGTTTGATGTAAAAGGACGTCGTGCTCT
AAGCATATATGCGACTGGTTTTTCAGATAACTATGTTGGACAAAGGAGTA
GAGATATGTTGAAATATGTGGATGGATTCTACAAGGAACTCGCAATTGTT
GCGGACGGAAAGGACATGGCTGAACACTACGGGAAAGCGGTTGATCTATT
GGACGCGTACTATCGAGAAGCAAGGTTAGCCCCACAAGAGTTGTCCGGCC
TGGCTTTGGATTAA
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Coding sequence (CDS) from alignment at tig00000237_pilon:98984..99547+

>Ggra1182.t1 ID=Ggra1182.t1|Name=Ggra1182.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000237_pilon:98984..99547+ (Gracilaria gracilis GNS1m male)
ATGGCCTTCGTATCGTCTTTTGTCGGAGTTAAATCCCCCCGTTGTATGGA
TTTGGTATCGAAGGCTGTCTCAGTTAAGCAGACGCCGACCATTACCGCAA
GCTTATCCAGGCGAGAAGTTTTGAAAACCTTATCTGCAATCCCCATTATA
GCGGAGTTGTTGCCACTACCAGCCTTAGCTGACCGAACTGCAGTTGGCGC
TAAGAGATCCTTCGACCGTTATCATCCTCGTATTCTGGACCTCATAGAAA
CAATGAAACAGATTCGCTCGTTCGTCACGAGCGAAGATGTTTCTGGTGCC
GCCACTCTAATAACTGACAAGCAGTTTGATGTAAAAGGACGTCGTGCTCT
AAGCATATATGCGACTGGTTTTTCAGATAACTATGTTGGACAAAGGAGTA
GAGATATGTTGAAATATGTGGATGGATTCTACAAGGAACTCGCAATTGTT
GCGGACGGAAAGGACATGGCTGAACACTACGGGAAAGCGGTTGATCTATT
GGACGCGTACTATCGAGAAGCAAGGTTAGCCCCACAAGAGTTGTCCGGCC
TGGCTTTGGATTAA
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