Ggra1181.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1181.t1
Unique Name	Ggra1181.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	495

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000237_pilon	contig	tig00000237_pilon:96879..98363 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3750.XP_008387654.1
PFAMs	AFG1_ATPase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K18798
Evalue	1.01e-55
EggNOG OGs	COG1485@1\|root,KOG2383@2759\|Eukaryota,37P2P@33090\|Viridiplantae,3G9MU@35493\|Streptophyta,4JFSW@91835\|fabids
EC	3.6.4.7
Description	Lactation elevated protein
COG category	S
BRITE	ko00000,ko01000,ko03029

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1181	Ggra1181	Gracilaria gracilis GNS1m male	gene	tig00000237_pilon 96879..98363 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1181.t1.start1	Ggra1181.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000237_pilon 96879..96881 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1181.t1.CDS1	Ggra1181.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000237_pilon 96879..98363 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1181.t1.exon1	Ggra1181.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000237_pilon 96879..98363 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1181.t1.stop1	Ggra1181.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000237_pilon 98361..98363 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1181.t1	Ggra1181.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000237_pilon 96879..98363 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000237_pilon:96879..98363+
coding sequence from alignment at tig00000237_pilon:96879..98363+

mRNA sequence

>Ggra1181.t1 ID=Ggra1181.t1|Name=Ggra1181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=495bp
MRSIQRLGRLPSRLHAAAVQSGLLKASAPQQQALPKLDNLIRDLPPYMEA
MESHADQLLFMEQMRHDVLKHENLRLSKLGVVGDAWRRLRYAANGIPPDT
PLNALPNKYFGLQEAPAAPTPPNGLYLHGDVGCGKSLLMDMTFECANEML
NSCARVHYHTFMISVYELLHKYDTLSERERASRGFFHPLDAVVGRLGRAN
SAGTGGGLLCFDEFQVADVADARLMHGILGRLMHSGTIVCFTANRSPADL
NRSQLQAADFRPFLDLLHERCDLIHLEGKDFRAVLSQEDRGQRLYFSPNE
QEQLKEAWRNIADRDWDDVVSEVWHVAYGRQIYAERVGGDSVQMSVEELI
EAPVGAADYRAIANHVSSIFVTDVIPVFTSDTRNFARRFITLIDVCYEHK
VRIIMRTEATAIDEMFSGVTPGADQAEIAEGLQFETEVAKEGIGADNRAI
STSTLYTGEDEAFAFRRAISRLREMQTKGFGTRSPFQTSITESE*

spliced messenger RNA

>Ggra1181.t1 ID=Ggra1181.t1|Name=Ggra1181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000237_pilon:96879..98363+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGTATCCAGCGCTTAGGTCGTTTACCATCACGCCTTCATGCTGC
TGCCGTACAGTCCGGCCTTCTTAAGGCCAGCGCTCCGCAGCAGCAAGCGC
TTCCAAAGCTGGACAACCTCATCCGCGATTTACCTCCATACATGGAGGCT
ATGGAGTCTCACGCGGACCAACTTCTCTTTATGGAGCAGATGCGACATGA
TGTGTTGAAGCACGAAAACTTACGGCTCTCGAAGCTTGGTGTGGTAGGGG
ATGCCTGGCGAAGACTGCGATACGCAGCGAACGGAATCCCACCCGATACT
CCTCTGAACGCGCTTCCGAACAAGTATTTTGGTCTCCAAGAAGCCCCTGC
GGCTCCTACACCTCCTAATGGTCTATATCTACACGGAGATGTCGGTTGTG
GCAAAAGTCTCCTCATGGATATGACATTTGAATGTGCAAACGAGATGTTG
AATTCTTGCGCACGAGTGCACTATCACACCTTCATGATTTCCGTCTATGA
ATTGCTCCATAAATATGACACCCTGAGTGAACGCGAGCGTGCAAGCAGAG
GTTTCTTTCACCCCCTTGACGCCGTTGTTGGTCGGCTGGGGCGTGCAAAT
TCAGCCGGAACTGGAGGCGGTTTGCTCTGTTTCGATGAATTCCAAGTTGC
AGATGTTGCTGACGCTCGTCTTATGCATGGAATTCTTGGAAGACTCATGC
ACTCCGGTACCATAGTCTGCTTCACGGCTAACAGATCTCCTGCAGATTTG
AATCGGAGTCAGTTACAAGCTGCAGACTTTCGACCGTTTCTAGACCTGCT
TCACGAACGCTGCGACCTCATACACCTTGAAGGCAAAGACTTTCGAGCAG
TGTTGTCTCAAGAAGACCGCGGGCAGCGCCTTTACTTTTCTCCGAATGAA
CAAGAACAACTTAAGGAGGCTTGGAGAAATATCGCCGACCGAGACTGGGA
TGATGTGGTTTCAGAAGTTTGGCATGTCGCATACGGTCGACAGATATACG
CGGAGCGCGTTGGGGGGGATTCAGTGCAGATGTCTGTAGAAGAGCTTATT
GAAGCTCCAGTAGGCGCAGCAGACTATCGAGCAATTGCAAATCACGTGTC
GTCCATTTTTGTTACAGATGTTATACCCGTTTTCACCTCCGATACCCGAA
ACTTTGCCCGCCGCTTCATTACTCTCATAGATGTATGCTATGAACATAAG
GTTCGCATAATTATGCGTACAGAAGCAACGGCAATTGATGAAATGTTCAG
TGGGGTTACTCCGGGAGCAGATCAAGCGGAGATTGCGGAAGGTCTGCAGT
TTGAGACAGAAGTTGCCAAGGAAGGTATTGGGGCTGATAACCGAGCTATT
TCTACCAGTACCTTATACACTGGTGAAGATGAAGCCTTCGCATTTCGTAG
GGCGATATCGAGACTCAGGGAAATGCAAACAAAAGGCTTCGGAACACGAT
CACCATTTCAAACGTCCATAACTGAATCAGAGTGA

protein sequence of Ggra1181.t1

>Ggra1181.t1 ID=Ggra1181.t1|Name=Ggra1181.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=495bp
MRSIQRLGRLPSRLHAAAVQSGLLKASAPQQQALPKLDNLIRDLPPYMEA
MESHADQLLFMEQMRHDVLKHENLRLSKLGVVGDAWRRLRYAANGIPPDT
PLNALPNKYFGLQEAPAAPTPPNGLYLHGDVGCGKSLLMDMTFECANEML
NSCARVHYHTFMISVYELLHKYDTLSERERASRGFFHPLDAVVGRLGRAN
SAGTGGGLLCFDEFQVADVADARLMHGILGRLMHSGTIVCFTANRSPADL
NRSQLQAADFRPFLDLLHERCDLIHLEGKDFRAVLSQEDRGQRLYFSPNE
QEQLKEAWRNIADRDWDDVVSEVWHVAYGRQIYAERVGGDSVQMSVEELI
EAPVGAADYRAIANHVSSIFVTDVIPVFTSDTRNFARRFITLIDVCYEHK
VRIIMRTEATAIDEMFSGVTPGADQAEIAEGLQFETEVAKEGIGADNRAI
STSTLYTGEDEAFAFRRAISRLREMQTKGFGTRSPFQTSITESE*

mRNA from alignment at tig00000237_pilon:96879..98363+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1181.t1 ID=Ggra1181.t1|Name=Ggra1181.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1485bp|location=Sequence derived from alignment at tig00000237_pilon:96879..98363+ (Gracilaria gracilis GNS1m male)
ATGCGCAGTATCCAGCGCTTAGGTCGTTTACCATCACGCCTTCATGCTGC
TGCCGTACAGTCCGGCCTTCTTAAGGCCAGCGCTCCGCAGCAGCAAGCGC
TTCCAAAGCTGGACAACCTCATCCGCGATTTACCTCCATACATGGAGGCT
ATGGAGTCTCACGCGGACCAACTTCTCTTTATGGAGCAGATGCGACATGA
TGTGTTGAAGCACGAAAACTTACGGCTCTCGAAGCTTGGTGTGGTAGGGG
ATGCCTGGCGAAGACTGCGATACGCAGCGAACGGAATCCCACCCGATACT
CCTCTGAACGCGCTTCCGAACAAGTATTTTGGTCTCCAAGAAGCCCCTGC
GGCTCCTACACCTCCTAATGGTCTATATCTACACGGAGATGTCGGTTGTG
GCAAAAGTCTCCTCATGGATATGACATTTGAATGTGCAAACGAGATGTTG
AATTCTTGCGCACGAGTGCACTATCACACCTTCATGATTTCCGTCTATGA
ATTGCTCCATAAATATGACACCCTGAGTGAACGCGAGCGTGCAAGCAGAG
GTTTCTTTCACCCCCTTGACGCCGTTGTTGGTCGGCTGGGGCGTGCAAAT
TCAGCCGGAACTGGAGGCGGTTTGCTCTGTTTCGATGAATTCCAAGTTGC
AGATGTTGCTGACGCTCGTCTTATGCATGGAATTCTTGGAAGACTCATGC
ACTCCGGTACCATAGTCTGCTTCACGGCTAACAGATCTCCTGCAGATTTG
AATCGGAGTCAGTTACAAGCTGCAGACTTTCGACCGTTTCTAGACCTGCT
TCACGAACGCTGCGACCTCATACACCTTGAAGGCAAAGACTTTCGAGCAG
TGTTGTCTCAAGAAGACCGCGGGCAGCGCCTTTACTTTTCTCCGAATGAA
CAAGAACAACTTAAGGAGGCTTGGAGAAATATCGCCGACCGAGACTGGGA
TGATGTGGTTTCAGAAGTTTGGCATGTCGCATACGGTCGACAGATATACG
CGGAGCGCGTTGGGGGGGATTCAGTGCAGATGTCTGTAGAAGAGCTTATT
GAAGCTCCAGTAGGCGCAGCAGACTATCGAGCAATTGCAAATCACGTGTC
GTCCATTTTTGTTACAGATGTTATACCCGTTTTCACCTCCGATACCCGAA
ACTTTGCCCGCCGCTTCATTACTCTCATAGATGTATGCTATGAACATAAG
GTTCGCATAATTATGCGTACAGAAGCAACGGCAATTGATGAAATGTTCAG
TGGGGTTACTCCGGGAGCAGATCAAGCGGAGATTGCGGAAGGTCTGCAGT
TTGAGACAGAAGTTGCCAAGGAAGGTATTGGGGCTGATAACCGAGCTATT
TCTACCAGTACCTTATACACTGGTGAAGATGAAGCCTTCGCATTTCGTAG
GGCGATATCGAGACTCAGGGAAATGCAAACAAAAGGCTTCGGAACACGAT
CACCATTTCAAACGTCCATAACTGAATCAGAGTGA

Coding sequence (CDS) from alignment at tig00000237_pilon:96879..98363+

>Ggra1181.t1 ID=Ggra1181.t1|Name=Ggra1181.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1485bp|location=Sequence derived from alignment at tig00000237_pilon:96879..98363+ (Gracilaria gracilis GNS1m male)
ATGCGCAGTATCCAGCGCTTAGGTCGTTTACCATCACGCCTTCATGCTGC
TGCCGTACAGTCCGGCCTTCTTAAGGCCAGCGCTCCGCAGCAGCAAGCGC
TTCCAAAGCTGGACAACCTCATCCGCGATTTACCTCCATACATGGAGGCT
ATGGAGTCTCACGCGGACCAACTTCTCTTTATGGAGCAGATGCGACATGA
TGTGTTGAAGCACGAAAACTTACGGCTCTCGAAGCTTGGTGTGGTAGGGG
ATGCCTGGCGAAGACTGCGATACGCAGCGAACGGAATCCCACCCGATACT
CCTCTGAACGCGCTTCCGAACAAGTATTTTGGTCTCCAAGAAGCCCCTGC
GGCTCCTACACCTCCTAATGGTCTATATCTACACGGAGATGTCGGTTGTG
GCAAAAGTCTCCTCATGGATATGACATTTGAATGTGCAAACGAGATGTTG
AATTCTTGCGCACGAGTGCACTATCACACCTTCATGATTTCCGTCTATGA
ATTGCTCCATAAATATGACACCCTGAGTGAACGCGAGCGTGCAAGCAGAG
GTTTCTTTCACCCCCTTGACGCCGTTGTTGGTCGGCTGGGGCGTGCAAAT
TCAGCCGGAACTGGAGGCGGTTTGCTCTGTTTCGATGAATTCCAAGTTGC
AGATGTTGCTGACGCTCGTCTTATGCATGGAATTCTTGGAAGACTCATGC
ACTCCGGTACCATAGTCTGCTTCACGGCTAACAGATCTCCTGCAGATTTG
AATCGGAGTCAGTTACAAGCTGCAGACTTTCGACCGTTTCTAGACCTGCT
TCACGAACGCTGCGACCTCATACACCTTGAAGGCAAAGACTTTCGAGCAG
TGTTGTCTCAAGAAGACCGCGGGCAGCGCCTTTACTTTTCTCCGAATGAA
CAAGAACAACTTAAGGAGGCTTGGAGAAATATCGCCGACCGAGACTGGGA
TGATGTGGTTTCAGAAGTTTGGCATGTCGCATACGGTCGACAGATATACG
CGGAGCGCGTTGGGGGGGATTCAGTGCAGATGTCTGTAGAAGAGCTTATT
GAAGCTCCAGTAGGCGCAGCAGACTATCGAGCAATTGCAAATCACGTGTC
GTCCATTTTTGTTACAGATGTTATACCCGTTTTCACCTCCGATACCCGAA
ACTTTGCCCGCCGCTTCATTACTCTCATAGATGTATGCTATGAACATAAG
GTTCGCATAATTATGCGTACAGAAGCAACGGCAATTGATGAAATGTTCAG
TGGGGTTACTCCGGGAGCAGATCAAGCGGAGATTGCGGAAGGTCTGCAGT
TTGAGACAGAAGTTGCCAAGGAAGGTATTGGGGCTGATAACCGAGCTATT
TCTACCAGTACCTTATACACTGGTGAAGATGAAGCCTTCGCATTTCGTAG
GGCGATATCGAGACTCAGGGAAATGCAAACAAAAGGCTTCGGAACACGAT
CACCATTTCAAACGTCCATAACTGAATCAGAGTGA