|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 136037.KDR22450 |
| Preferred name | SART3 |
| PFAMs | LSM_int_assoc,Lsm_interact,RRM_1 |
| Max annot lvl | 33208|Metazoa |
| GOs | GO:0000244,GO:0000245,GO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000902,GO:0001775,GO:0002020,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0007417,GO:0008150,GO:0008152,GO:0008283,GO:0008380,GO:0009653,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010638,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0017069,GO:0017070,GO:0019222,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030621,GO:0030624,GO:0031016,GO:0031017,GO:0031056,GO:0031058,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031497,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032989,GO:0033043,GO:0033044,GO:0034622,GO:0034641,GO:0034728,GO:0035272,GO:0042393,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045321,GO:0045862,GO:0046483,GO:0046649,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0055123,GO:0060255,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0070013,GO:0071103,GO:0071425,GO:0071704,GO:0071824,GO:0071826,GO:0071840,GO:0072089,GO:0080090,GO:0090085,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902275,GO:1903003,GO:1903320,GO:1903322,GO:1903584,GO:1903586,GO:1905269,GO:1990381,GO:2001252 |
| Evalue | 1.05e-13 |
| EggNOG OGs | KOG0128@1|root,KOG0128@2759|Eukaryota,38GYF@33154|Opisthokonta,3BEUM@33208|Metazoa,3CTV2@33213|Bilateria,41TXY@6656|Arthropoda,3SHRT@50557|Insecta |
| Description | nucleic acid binding |
| COG category | A |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra1177.t1.start1 | Ggra1177.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000237_pilon 90108..90110 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra1177.t1 ID=Ggra1177.t1|Name=Ggra1177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=734bp MMSSSSSSSSSSSSAAAEGEAAASASASASASASASASASASAASLASRV DALRLSVQRSGTYEQHAALVHALRELSRPEQLQRARERFADAHPLDAAEW LQWLDDELSAADSDARRVALLPLFERAMRDFLHVPLHLLFVRTVLQLWRS HAVDGARVLRAFDSCVRLGAVHHFTEGEPLWRLYQQVAPQLTRPLEHLEQ QPCYQSQSSELASQFSAFESKLSHAQSQNHLHALTHVYTSYATFVKQSHP LACISVCERMLAAAYSHPPAWLHYLSYLATLADKRPLVAVADRAIRNVPT CIPVWSHAVLAAKYHPNPEQQLCSLLQRAHPFVTTSEQYAAAEALSKHAW SLFVPLTAPTSLLPALNQCLRFNVLHSVQWASATCFAAAVLAAADHVNSA VQLFQSVLNARPGETRWLLQFATVISTKSQHPVRHMFQHAMTQLHSPIDA NIVRDAWYAFELAVTPKETLLHRLHLVDLASAKSVHHPPPVAHDAHAAHK RPNKRRDTPHASKKHKVRNGAPPQHDDRTNVHTLDAVKPAPQAVPQTAPN GSATESKHATAHGTSAQNARQRPNLQHDAPEPNTVFVSNLPFNVKEEHLR QFFAHAGTIRHIRLPLRSDGAPKGIAYVEFEQDAAVQNALRAHLQAIHGR TVSVKRSNPPQKKRGGNKSRASSTKWRPLQPRASASRKVAIPAIRASDKD VHMTDNMQQSAKDEHASDHKPMNQDDFRAMLKG* back to topspliced messenger RNA >Ggra1177.t1 ID=Ggra1177.t1|Name=Ggra1177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:90108..92309+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGATgtcgtcgtcatcgtcgtcgtcgtcgtcgtcgtcgtcgGCGGCGGC GGAGGGGGAggcggcggcgtcggcgtcggcgtcggcgtcggcgtcggcgt cggcgtcggcgtcggcgtcggcgtcggcCGCGTCGCTGGCGTCGCGAGTG GACGCGCTGCGCCTCAGTGTGCAACGCAGCGGCACGTACGAGCAGCACGC CGCGCTGGTACACGCGCTACGAGAGCTATCGCGCCCCGAGCAGCTGCAGC GCGCGCGCGAGCGCTTCGCAGACGCGCACCCGCTGGACGCCGCCGAGTGG CTGCAGTGGCTGGACGACGAGCTGAGCGCCGCCGACAGCGACGCGCGTCG CGTGGCGCTGCTGCCGCTGTTCGAACGCGCCATGCGCGACTTTCTTCACG TGCCGCTGCACCTGCTGTTCGTGCGCACCGTGCTGCAGCTGTGGCGCTCC CACGCCGTCGATGGCGCGCGCGTGCTGCGTGCCTTCGACAGCTGCGTGCG GCTTGGCGCCGTGCATCACTTCACGGAGGGCGAGCCGTTGTGGCGCTTGT ATCAACAGGTGGCGCCGCAGTTGACGCGCCCACTGGAGCACTTAGAACAG CAGCCGTGTTACCAGTCGCAATCGTCCGAGCTCGCTTCTCAATTCAGCGC TTTCGAGAGCAAGTTGAGCCACGCCCAATCGCAGAACCACCTGCACGCGC TCACGCATGTTTACACCTCGTACGCCACTTTTGTCAAACAATCGCACCCT CTCGCCTGCATCAGTGTGTGTGAGCGCATGCTCGCTGCCGCCTACTCCCA CCCGCCCGCCTGGCTGCATTACCTCTCGTATCTTGCCACACTTGCCGACA AGCGCCCTCTTGTTGCCGTCGCCGATCGCGCCATTCGCAACGTGCCCACC TGCATTCCCGTGTGGTCTCACGCCGTACTCGCCGCCAAATACCACCCAAA CCCCGAGCAACAGCTGTGCAGCCTGCTGCAACGCGCCCACCCGTTCGTCA CCACAAGCGAGCAGTATGCAGCCGCCGAGGCGCTCTCCAAACACGCCTGG TCGCTCTTTGTGCCGCTCACCGCCCCCACCTCCCTGCTGCCCGCCTTGAA TCAATGCTTGCGCTTCAATGTGTTACACTCCGTGCAGTGGGCCTCTGCCA CCTGCTTTGCTGCCGCCGTACTTGCTGCTGCCGATCACGTCAACAGCGCC GTTCAGCTGTTTCAGAGTGTGCTCAATGCCAGACCGGGCGAGACAAGGTG GCTGCTTCAATTTGCCACCGTCATTTCTACCAAATCTCAGCACCCTGTTC GCCACATGTTTCAACACGCAATGACGCAGTTGCATTCCCCGATCGATGCC AACATTGTGCGCGATGCTTGGTACGCCTTTGAGCTCGCCGTCACCCCGAA AGAAACCCTGCTGCACAGGCTGCACCTTGTTGACCTCGCTAGCGCCAAAA GCGTGCACCACCCGCCGCCTGTGGCTCATGATGCACACGCCGCCCACAAG CGCCCCAACAAACGCCGTGACACACCGCACGCATCGAAGAAGCACAAGGT GCGAAATGGTGCTCCACCACAACATGACGATCGCACCAACGTACATACTT TGGATGCTGTGAAGCCAGCTCCACAAGCTGTGCCACAAACCGCCCCCAAC GGCAGTGCTACCGAAAGCAAACACGCCACCGCACATGGCACAAGCGCTCA AAACGCTCGTCAACGCCCAAACCTACAGCATGATGCGCCAGAGCCAAACA CCGTATTTGTGTCCAATCTTCCATTTAATGTTAAAGAAGAACACTTGCGA CAGTTTTTCGCTCACGCTGGTACCATACGCCACATACGCCTTCCACTTCG CTCAGACGGCGCGCCAAAGGGAATCGCGTACGTGGAGTTTGAGCAAGACG CCGCTGTGCAAAATGCATTGCGCGCACATTTACAAGCGATTCACGGAAGG ACCGTATCGGTCAAGCGCTCAAACCCACCGCAAAAGAAGAGGGGGGGCAA CAAATCTCGTGCATCTTCTACAAAATGGCGGCCCTTGCAACCTCGTGCTT CCGCCTCCCGAAAAGTGGCGATTCCCGCCATACGCGCGTCAGACAAGGAT GTGCATATGACTGACAACATGCAACAATCCGCCAAAGATGAACACGCTTC AGATCATAAACCTATGAATCAAGACGACTTTCGCGCTATGCTAAAGGGAT AA back to topprotein sequence of Ggra1177.t1 >Ggra1177.t1 ID=Ggra1177.t1|Name=Ggra1177.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=734bp
MMSSSSSSSSSSSSAAAEGEAAASASASASASASASASASASAASLASRV DALRLSVQRSGTYEQHAALVHALRELSRPEQLQRARERFADAHPLDAAEW LQWLDDELSAADSDARRVALLPLFERAMRDFLHVPLHLLFVRTVLQLWRS HAVDGARVLRAFDSCVRLGAVHHFTEGEPLWRLYQQVAPQLTRPLEHLEQ QPCYQSQSSELASQFSAFESKLSHAQSQNHLHALTHVYTSYATFVKQSHP LACISVCERMLAAAYSHPPAWLHYLSYLATLADKRPLVAVADRAIRNVPT CIPVWSHAVLAAKYHPNPEQQLCSLLQRAHPFVTTSEQYAAAEALSKHAW SLFVPLTAPTSLLPALNQCLRFNVLHSVQWASATCFAAAVLAAADHVNSA VQLFQSVLNARPGETRWLLQFATVISTKSQHPVRHMFQHAMTQLHSPIDA NIVRDAWYAFELAVTPKETLLHRLHLVDLASAKSVHHPPPVAHDAHAAHK RPNKRRDTPHASKKHKVRNGAPPQHDDRTNVHTLDAVKPAPQAVPQTAPN GSATESKHATAHGTSAQNARQRPNLQHDAPEPNTVFVSNLPFNVKEEHLR QFFAHAGTIRHIRLPLRSDGAPKGIAYVEFEQDAAVQNALRAHLQAIHGR TVSVKRSNPPQKKRGGNKSRASSTKWRPLQPRASASRKVAIPAIRASDKD VHMTDNMQQSAKDEHASDHKPMNQDDFRAMLKG* back to topmRNA from alignment at tig00000237_pilon:90108..92309+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra1177.t1 ID=Ggra1177.t1|Name=Ggra1177.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:90108..92309+ (Gracilaria gracilis GNS1m male) ATGATgtcgtcgtcatcgtcgtcgtcgtcgtcgtcgtcgtcgGCGGCGGC
GGAGGGGGAggcggcggcgtcggcgtcggcgtcggcgtcggcgtcggcgt
cggcgtcggcgtcggcgtcggcgtcggcCGCGTCGCTGGCGTCGCGAGTG
GACGCGCTGCGCCTCAGTGTGCAACGCAGCGGCACGTACGAGCAGCACGC
CGCGCTGGTACACGCGCTACGAGAGCTATCGCGCCCCGAGCAGCTGCAGC
GCGCGCGCGAGCGCTTCGCAGACGCGCACCCGCTGGACGCCGCCGAGTGG
CTGCAGTGGCTGGACGACGAGCTGAGCGCCGCCGACAGCGACGCGCGTCG
CGTGGCGCTGCTGCCGCTGTTCGAACGCGCCATGCGCGACTTTCTTCACG
TGCCGCTGCACCTGCTGTTCGTGCGCACCGTGCTGCAGCTGTGGCGCTCC
CACGCCGTCGATGGCGCGCGCGTGCTGCGTGCCTTCGACAGCTGCGTGCG
GCTTGGCGCCGTGCATCACTTCACGGAGGGCGAGCCGTTGTGGCGCTTGT
ATCAACAGGTGGCGCCGCAGTTGACGCGCCCACTGGAGCACTTAGAACAG
CAGCCGTGTTACCAGTCGCAATCGTCCGAGCTCGCTTCTCAATTCAGCGC
TTTCGAGAGCAAGTTGAGCCACGCCCAATCGCAGAACCACCTGCACGCGC
TCACGCATGTTTACACCTCGTACGCCACTTTTGTCAAACAATCGCACCCT
CTCGCCTGCATCAGTGTGTGTGAGCGCATGCTCGCTGCCGCCTACTCCCA
CCCGCCCGCCTGGCTGCATTACCTCTCGTATCTTGCCACACTTGCCGACA
AGCGCCCTCTTGTTGCCGTCGCCGATCGCGCCATTCGCAACGTGCCCACC
TGCATTCCCGTGTGGTCTCACGCCGTACTCGCCGCCAAATACCACCCAAA
CCCCGAGCAACAGCTGTGCAGCCTGCTGCAACGCGCCCACCCGTTCGTCA
CCACAAGCGAGCAGTATGCAGCCGCCGAGGCGCTCTCCAAACACGCCTGG
TCGCTCTTTGTGCCGCTCACCGCCCCCACCTCCCTGCTGCCCGCCTTGAA
TCAATGCTTGCGCTTCAATGTGTTACACTCCGTGCAGTGGGCCTCTGCCA
CCTGCTTTGCTGCCGCCGTACTTGCTGCTGCCGATCACGTCAACAGCGCC
GTTCAGCTGTTTCAGAGTGTGCTCAATGCCAGACCGGGCGAGACAAGGTG
GCTGCTTCAATTTGCCACCGTCATTTCTACCAAATCTCAGCACCCTGTTC
GCCACATGTTTCAACACGCAATGACGCAGTTGCATTCCCCGATCGATGCC
AACATTGTGCGCGATGCTTGGTACGCCTTTGAGCTCGCCGTCACCCCGAA
AGAAACCCTGCTGCACAGGCTGCACCTTGTTGACCTCGCTAGCGCCAAAA
GCGTGCACCACCCGCCGCCTGTGGCTCATGATGCACACGCCGCCCACAAG
CGCCCCAACAAACGCCGTGACACACCGCACGCATCGAAGAAGCACAAGGT
GCGAAATGGTGCTCCACCACAACATGACGATCGCACCAACGTACATACTT
TGGATGCTGTGAAGCCAGCTCCACAAGCTGTGCCACAAACCGCCCCCAAC
GGCAGTGCTACCGAAAGCAAACACGCCACCGCACATGGCACAAGCGCTCA
AAACGCTCGTCAACGCCCAAACCTACAGCATGATGCGCCAGAGCCAAACA
CCGTATTTGTGTCCAATCTTCCATTTAATGTTAAAGAAGAACACTTGCGA
CAGTTTTTCGCTCACGCTGGTACCATACGCCACATACGCCTTCCACTTCG
CTCAGACGGCGCGCCAAAGGGAATCGCGTACGTGGAGTTTGAGCAAGACG
CCGCTGTGCAAAATGCATTGCGCGCACATTTACAAGCGATTCACGGAAGG
ACCGTATCGGTCAAGCGCTCAAACCCACCGCAAAAGAAGAGGGGGGGCAA
CAAATCTCGTGCATCTTCTACAAAATGGCGGCCCTTGCAACCTCGTGCTT
CCGCCTCCCGAAAAGTGGCGATTCCCGCCATACGCGCGTCAGACAAGGAT
GTGCATATGACTGACAACATGCAACAATCCGCCAAAGATGAACACGCTTC
AGATCATAAACCTATGAATCAAGACGACTTTCGCGCTATGCTAAAGGGAT
AA back to topCoding sequence (CDS) from alignment at tig00000237_pilon:90108..92309+ >Ggra1177.t1 ID=Ggra1177.t1|Name=Ggra1177.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2202bp|location=Sequence derived from alignment at tig00000237_pilon:90108..92309+ (Gracilaria gracilis GNS1m male) ATGATgtcgtcgtcatcgtcgtcgtcgtcgtcgtcgtcgtcgGCGGCGGC GGAGGGGGAggcggcggcgtcggcgtcggcgtcggcgtcggcgtcggcgt cggcgtcggcgtcggcgtcggcgtcggcCGCGTCGCTGGCGTCGCGAGTG GACGCGCTGCGCCTCAGTGTGCAACGCAGCGGCACGTACGAGCAGCACGC CGCGCTGGTACACGCGCTACGAGAGCTATCGCGCCCCGAGCAGCTGCAGC GCGCGCGCGAGCGCTTCGCAGACGCGCACCCGCTGGACGCCGCCGAGTGG CTGCAGTGGCTGGACGACGAGCTGAGCGCCGCCGACAGCGACGCGCGTCG CGTGGCGCTGCTGCCGCTGTTCGAACGCGCCATGCGCGACTTTCTTCACG TGCCGCTGCACCTGCTGTTCGTGCGCACCGTGCTGCAGCTGTGGCGCTCC CACGCCGTCGATGGCGCGCGCGTGCTGCGTGCCTTCGACAGCTGCGTGCG GCTTGGCGCCGTGCATCACTTCACGGAGGGCGAGCCGTTGTGGCGCTTGT ATCAACAGGTGGCGCCGCAGTTGACGCGCCCACTGGAGCACTTAGAACAG CAGCCGTGTTACCAGTCGCAATCGTCCGAGCTCGCTTCTCAATTCAGCGC TTTCGAGAGCAAGTTGAGCCACGCCCAATCGCAGAACCACCTGCACGCGC TCACGCATGTTTACACCTCGTACGCCACTTTTGTCAAACAATCGCACCCT CTCGCCTGCATCAGTGTGTGTGAGCGCATGCTCGCTGCCGCCTACTCCCA CCCGCCCGCCTGGCTGCATTACCTCTCGTATCTTGCCACACTTGCCGACA AGCGCCCTCTTGTTGCCGTCGCCGATCGCGCCATTCGCAACGTGCCCACC TGCATTCCCGTGTGGTCTCACGCCGTACTCGCCGCCAAATACCACCCAAA CCCCGAGCAACAGCTGTGCAGCCTGCTGCAACGCGCCCACCCGTTCGTCA CCACAAGCGAGCAGTATGCAGCCGCCGAGGCGCTCTCCAAACACGCCTGG TCGCTCTTTGTGCCGCTCACCGCCCCCACCTCCCTGCTGCCCGCCTTGAA TCAATGCTTGCGCTTCAATGTGTTACACTCCGTGCAGTGGGCCTCTGCCA CCTGCTTTGCTGCCGCCGTACTTGCTGCTGCCGATCACGTCAACAGCGCC GTTCAGCTGTTTCAGAGTGTGCTCAATGCCAGACCGGGCGAGACAAGGTG GCTGCTTCAATTTGCCACCGTCATTTCTACCAAATCTCAGCACCCTGTTC GCCACATGTTTCAACACGCAATGACGCAGTTGCATTCCCCGATCGATGCC AACATTGTGCGCGATGCTTGGTACGCCTTTGAGCTCGCCGTCACCCCGAA AGAAACCCTGCTGCACAGGCTGCACCTTGTTGACCTCGCTAGCGCCAAAA GCGTGCACCACCCGCCGCCTGTGGCTCATGATGCACACGCCGCCCACAAG CGCCCCAACAAACGCCGTGACACACCGCACGCATCGAAGAAGCACAAGGT GCGAAATGGTGCTCCACCACAACATGACGATCGCACCAACGTACATACTT TGGATGCTGTGAAGCCAGCTCCACAAGCTGTGCCACAAACCGCCCCCAAC GGCAGTGCTACCGAAAGCAAACACGCCACCGCACATGGCACAAGCGCTCA AAACGCTCGTCAACGCCCAAACCTACAGCATGATGCGCCAGAGCCAAACA CCGTATTTGTGTCCAATCTTCCATTTAATGTTAAAGAAGAACACTTGCGA CAGTTTTTCGCTCACGCTGGTACCATACGCCACATACGCCTTCCACTTCG CTCAGACGGCGCGCCAAAGGGAATCGCGTACGTGGAGTTTGAGCAAGACG CCGCTGTGCAAAATGCATTGCGCGCACATTTACAAGCGATTCACGGAAGG ACCGTATCGGTCAAGCGCTCAAACCCACCGCAAAAGAAGAGGGGGGGCAA CAAATCTCGTGCATCTTCTACAAAATGGCGGCCCTTGCAACCTCGTGCTT CCGCCTCCCGAAAAGTGGCGATTCCCGCCATACGCGCGTCAGACAAGGAT GTGCATATGACTGACAACATGCAACAATCCGCCAAAGATGAACACGCTTC AGATCATAAACCTATGAATCAAGACGACTTTCGCGCTATGCTAAAGGGAT AA back to top
|